/usr/lib/R/site-library/snpStats/NAMESPACE is in r-bioc-snpstats 1.28.0+dfsg-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 | useDynLib("snpStats")
import(methods)
importFrom(graphics, abline, axis, barplot, legend, mtext, par, plot,
points, polygon)
importFrom(grDevices, heat.colors)
importFrom(stats, model.matrix, model.offset, model.response,
model.weights, pchisq, qbeta, qchisq, terms)
importFrom(survival, cluster, strata, untangle.specials)
importFrom(utils, download.file, flush.console, head, read.table)
importFrom(BiocGenerics, cbind)
importFrom(BiocGenerics, rbind)
importClassesFrom(Matrix, dsCMatrix, dgCMatrix)
exportClasses(SnpMatrix, XSnpMatrix, ImputationRules,
SingleSnpTests, SingleSnpTestsScore,
GlmTests, GlmEstimates)
exportMethods(cbind, chi.squared, deg.freedom, effect.sign, is.na,
names, pool2, p.value, rbind, show, summary, switch.alleles,
plot, sample.size, effective.sample.size,
"[", "[<-", coerce, initialize)
export(can.impute, convert.snpMatrix, convert.snpMatrix.dir,
filter.rules, Fst, glm.test.control, g2post, ibsCount, ibsDist,
impute.snps, imputation.maf, imputation.r2, imputation.nsnp, ld, mean2g,
misinherits, mvtests, plotUncertainty, pool, post2g, pp, qq.chisq,
read.beagle, read.impute, read.long, read.mach, read.pedfile,
read.plink, read.snps.long, random.snps,
row.summary, col.summary,
single.snp.tests, sm.compare,
snp.cor, snp.imputation, snp.lhs.tests, snp.lhs.estimates,
snp.post.multiply, snp.pre.multiply,
snp.rhs.tests, snp.rhs.estimates, tdt.snp,
test.allele.switch, write.plink, write.SnpMatrix, xxt)
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