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<head><title>R: Dissimilarity-Based Functions for Ecological Analysis</title>
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<h1> Dissimilarity-Based Functions for Ecological Analysis
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</div><h2>Documentation for package ‘ecodist’ version 2.0.1</h2>
<ul><li><a href="../DESCRIPTION">DESCRIPTION file</a>.</li>
<li><a href="../doc/index.html">User guides, package vignettes and other documentation.</a></li>
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<h2>Help Pages</h2>
<table width="100%">
<tr><td style="width: 25%;"><a href="ecodist-package.html">ecodist-package</a></td>
<td>Dissimilarity-Based Functions for Ecological Analysis</td></tr>
<tr><td style="width: 25%;"><a href="addord.html">addord</a></td>
<td>Fit new points to an existing NMDS configuration.</td></tr>
<tr><td style="width: 25%;"><a href="bcdist.html">bcdist</a></td>
<td>Bray-Curtis distance</td></tr>
<tr><td style="width: 25%;"><a href="bump.html">bump</a></td>
<td>Nine-bump spatial pattern</td></tr>
<tr><td style="width: 25%;"><a href="bump.pmgram.html">bump.pmgram</a></td>
<td>Nine-bump spatial pattern</td></tr>
<tr><td style="width: 25%;"><a href="cor2m.html">cor2m</a></td>
<td>Two-matrix correlation table</td></tr>
<tr><td style="width: 25%;"><a href="corgen.html">corgen</a></td>
<td>Generate correlated data</td></tr>
<tr><td style="width: 25%;"><a href="crosstab.html">crosstab</a></td>
<td>Data formatting</td></tr>
<tr><td style="width: 25%;"><a href="distance.html">distance</a></td>
<td>Calculate dissimilarity/distance metrics</td></tr>
<tr><td style="width: 25%;"><a href="ecodist-package.html">ecodist</a></td>
<td>Dissimilarity-Based Functions for Ecological Analysis</td></tr>
<tr><td style="width: 25%;"><a href="fixdmat.html">fixdmat</a></td>
<td>Distance matrix conversion</td></tr>
<tr><td style="width: 25%;"><a href="full.html">full</a></td>
<td>Full symmetric matrix</td></tr>
<tr><td style="width: 25%;"><a href="graze.html">graze</a></td>
<td>Site information and grazed vegetation data.</td></tr>
<tr><td style="width: 25%;"><a href="iris.fit.html">iris.fit</a></td>
<td>Example of adding to an ordination</td></tr>
<tr><td style="width: 25%;"><a href="iris.nmds.html">iris.nmds</a></td>
<td>Example for nmds</td></tr>
<tr><td style="width: 25%;"><a href="iris.vf.html">iris.vf</a></td>
<td>Example for vector fitting on ordination</td></tr>
<tr><td style="width: 25%;"><a href="iris.vfrot.html">iris.vfrot</a></td>
<td>Example for vector fitting on rotated ordination</td></tr>
<tr><td style="width: 25%;"><a href="lower.html">lower</a></td>
<td>Lower-triangular matrix</td></tr>
<tr><td style="width: 25%;"><a href="mantel.html">mantel</a></td>
<td>Mantel test</td></tr>
<tr><td style="width: 25%;"><a href="mgram.html">mgram</a></td>
<td>Mantel correlogram</td></tr>
<tr><td style="width: 25%;"><a href="mgroup.html">mgroup</a></td>
<td>Mantel test for groups</td></tr>
<tr><td style="width: 25%;"><a href="min.nmds.html">min.nmds</a></td>
<td>Find minimum stress configuration</td></tr>
<tr><td style="width: 25%;"><a href="MRM.html">MRM</a></td>
<td>Multiple Regression on distance Matrices</td></tr>
<tr><td style="width: 25%;"><a href="nmds.html">nmds</a></td>
<td>Non-metric multidimensional scaling</td></tr>
<tr><td style="width: 25%;"><a href="min.nmds.html">nmds.min</a></td>
<td>Find minimum stress configuration</td></tr>
<tr><td style="width: 25%;"><a href="pco.html">pco</a></td>
<td>Principal coordinates analysis</td></tr>
<tr><td style="width: 25%;"><a href="plot.mgram.html">plot.mgram</a></td>
<td>Plot a Mantel correlogram</td></tr>
<tr><td style="width: 25%;"><a href="plot.nmds.html">plot.nmds</a></td>
<td>Plot information about NMDS ordination</td></tr>
<tr><td style="width: 25%;"><a href="plot.vf.html">plot.vf</a></td>
<td>Plots fitted vectors onto an ordination diagram</td></tr>
<tr><td style="width: 25%;"><a href="pmgram.html">pmgram</a></td>
<td>Partial Mantel correlogram</td></tr>
<tr><td style="width: 25%;"><a href="residuals.mgram.html">residuals.mgram</a></td>
<td>Residuals of a Mantel correlogram</td></tr>
<tr><td style="width: 25%;"><a href="vf.html">vf</a></td>
<td>Vector fitting</td></tr>
<tr><td style="width: 25%;"><a href="xdistance.html">xdistance</a></td>
<td>Cross-distance between two datasets.</td></tr>
<tr><td style="width: 25%;"><a href="xmantel.html">xmantel</a></td>
<td>Cross-Mantel test</td></tr>
<tr><td style="width: 25%;"><a href="xmgram.html">xmgram</a></td>
<td>Cross-Mantel correlogram</td></tr>
<tr><td style="width: 25%;"><a href="z.no.html">z.no</a></td>
<td>Example for pmgram</td></tr>
<tr><td style="width: 25%;"><a href="z.z1.html">z.z1</a></td>
<td>Example for pmgram</td></tr>
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