This file is indexed.

/usr/lib/R/site-library/Hmisc/NAMESPACE is in r-cran-hmisc 4.1-1-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
export("%nin%",abs.error.pred,addMarginal,all.digits,all.is.numeric,approxExtrap,areg,areg.boot,aregImpute,aregTran,arrGrob,as.discrete,asNumericMatrix,ballocation,bezier,binconf,biVar,bootkm,bpower,bpower.sim,bpplot,bpplotM,bpplt,bppltp,bpx,bsamsize,bystats,bystats2,capitalize,catTestchisq,Cbind,ceil,character.table,chiSquare,ciapower,cleanup.import,clowess,cnvrt.coords,code.levels,colorFacet,combine.levels,combineLabels,confbar,consolidate,contents,conTestkw,cpower,Cs,csv.get,cumcategory,curveRep,curveSmooth,cut2,datadensity,dataDensityString,dataframeReduce,dataRep,ddmmmyy,deff,describe,discrete,dotchart2,dotchart3,dotchartp,dotchartpl,Dotplot,drawPlot,dvi,dvigv,dvips,Ecdf,equalBins,errbar,escapeBS,escapeRegex,event.chart,event.convert,event.history,expr.tree,ffCompress,fillin,find.matches,first.word,fit.mult.impute,format.df,format.pval,formatCats,formatCons,formatDateTime,formatdescribeSingle,formatSep,formatTestStats,ftupwr,ftuss,Function,gbayes,gbayes1PowerNP,gbayes2,gbayesMixPost,gbayesMixPowerNP,gbayesMixPredNoData,get2rowHeads,getHdata,getLatestSource,GetModelFrame,getRs,getZip,ggfreqScatter,GiniMd,Gompertz2,groupn,grType,hdquantile,hist.data.frame,histbackback,histboxp,histSpike,histSpikeg,hoeffd,html,htmlGreek,htmlSN,htmlSpecial,htmlSpecialType,htmlTranslate,htmlVerbatim,importConvertDateTime,improveProb,impute,impute.transcan,inmChoice,inverseFunction,invertTabulated,is.discrete,is.imputed,is.mChoice,is.present,is.special.miss,james.stein,jitter2,Key,Key2,km.quick,knitrSet,labcurve,label,Label,labelLatex,labelPlotmath,Lag,largest.empty,latex,latexBuild,latexCheckOptions,latexDotchart,latexNeedle,latexSN,latexTabular,latexTherm,latexTranslate,latexVerbatim,list.tree,llist,lm.fit.qr.bare,Load,Lognorm2,logrank,lookupSASContents,lrcum,makeNames,makeNstr,makeSteps,mApply,markupSpecs,mask,match.mChoice,matchCases,matrix2dataFrame,matxv,mbarclPanel,mChoice,mdb.get,Mean,medvPanel,Merge,mgp.axis,mgp.axis.labels,mhgr,minor.tick,monotone,monthDays,mtitle,multLines,na.delete,na.detail.response,na.include,na.keep,na.pattern,na.retain,naclus,nafitted.delete,Names2names,naplot,napredict.delete,naprint.delete,naprint.keep,naresid.delete,naresid.keep,nFm,nobsY,nomiss,nstr,num.denom.setup,num.intercepts,numeric.string,numericScale,oPar,optionsCmds,ordGridFun,ordTestpo,outerText,panel.bpplot,panel.Dotplot,panel.Ecdf,panel.plsmo,panel.xYplot,parGrid,partition.matrix,partition.vector,pasteFit,pBlock,pc1,plotCorrPrecision,plotlyParm,plotlySave,plotmathTranslate,plotMultSim,plotpsummaryM,plsmo,pngNeedle,pomodm,popower,posamsize,prepanel.Dotplot,prepanel.Ecdf,prepanel.xYplot,print.char.matrix,prList,prn,prselect,prType,pstamp,putHfig,putKey,putKeyEmpty,Quantile,Quantile2,rcorr,rcorr.cens,rcorrcens,rcorrp.cens,rcspline.eval,rcspline.plot,rcspline.restate,rcsplineFunction,read.xportDataload,readSAScsv,redun,reformM,reLabelled,replace.substring.wild,reShape,responseSummary,rlegend,rlegendg,rm.boot,rMultinom,roundN,roundPOSIXt,samplesize.bin,sas.codes,sas.get,sas.get.macro,sasdsLabels,sasxport.get,Save,scat1d,score.binary,sedit,sepUnitsTrans,setParNro,setTrellis,show.col,show.pch,showPsfrag,simplifyDims,simRegOrd,sKey,smean.cl.boot,smean.cl.normal,smean.sd,smean.sdl,smearingEst,smedian.hilow,solvet,somers2,spearman,spearman.test,spearman2,spower,spss.get,src,stat_plsmo,stata.get,StatPlsmo,stepfun.eval,stratify,strgraphwrap,string.bounding.box,string.break.line,stringDims,stripChart,subplot,substi,substi.source,substring.location,substring2,summarize,summaryD,summaryM,summaryP,summaryRc,summaryS,symbol.freq,sys,t.test.cluster,table_formatpct,table_freq,table_latexdefs,table_N,table_pc,table_trio,tabulr,termsDrop,testDateTime,tex,tobase64image,transace,transcan,translate,trap.rule,trellis.strip.blank,truncPOSIXt,uncbind,units,unPaste,upData,upFirst,valueLabel,valueName,valueTags,valueUnit,var.inner,varclus,Weibull2,whichClosek,whichClosePW,whichClosest,wtd.Ecdf,wtd.loess.noiter,wtd.mean,wtd.quantile,wtd.rank,wtd.table,wtd.var,xInch,xless,xy.group,xYplot,xySortNoDupNoNA,yearDays,yInch,ynbind,zoom,"[<-.discrete","consolidate<-","is.na<-.discrete","label<-","length<-.discrete","substring2<-","valueLabel<-","valueName<-","valueTags<-","valueUnit<-")

useDynLib(Hmisc, .registration=TRUE, .fixes="F_")

import(methods)
import(stats)
import(survival)
import(Formula)
# import(grid)
import(lattice)
import(ggplot2)
## import(scales)

importFrom(acepack, ace, avas)
importFrom(base64enc, base64encode)
importFrom(latticeExtra, useOuterStrips, resizePanels)
importFrom(cluster, clara)
importFrom(foreign, read.dta, lookup.xport, read.spss, read.xport)
importFrom(gtable, gtable_add_grob)
importFrom(nnet, multinom)
importFrom(rpart, rpart, rpart.control)
importFrom(grid, convertX, convertY, grid.segments, gpar, convertUnit, grid.polygon, is.unit, grid.rect, grid.xaxis, grid.yaxis, convertWidth, convertHeight, grid.text, viewport, grobWidth, grobHeight)
importFrom(gridExtra, arrangeGrob)
importFrom(htmlTable, htmlTable, txtRound)
importFrom(htmltools, HTML)

## importFrom(tables, tabular, table_options)
## importFrom(ggplot2, geom_segment)

importFrom(grDevices, adjustcolor, col2rgb, dev.list, gray, rainbow,
           xy.coords, png, dev.off)
importFrom(graphics, abline, arrows, axis, axis.Date,
           axis.POSIXct, barplot, box, hist, legend, lines,
           locator, mtext, par, plot, plot.new,
           plot.window, points, polygon, rect, segments,
           strheight, strwidth, symbols, text, title)
importFrom(utils, browseURL, capture.output, download.file, find,
           getFromNamespace, object.size, read.csv, read.table)
           
importFrom(data.table, is.data.table, key)

S3method(print, arrGrob)
S3method(ggplot, transcan)
S3method(ggplot, summaryP)
S3method(print, spower)
S3method(print, Quantile2)
S3method(plot, describe)
S3method(plot, Quantile2)
S3method(plot, summaryP)
S3method(plot, summaryS)
S3method(plot, transcan)
S3method(label, default)
S3method(label, data.frame)
S3method('label<-', default)
S3method('label<-', data.frame)
S3method('[', labelled)
S3method('[', ffdflabel)
S3method(print, labelled)
S3method(relevel, labelled)
S3method(label, Surv)
S3method(units, default)
S3method(units, Surv)

S3method(Ecdf,data.frame)
S3method(Ecdf,default)
S3method(Ecdf,formula)
S3method(Function,areg.boot)

S3method(Function,transcan)
S3method(Label,data.frame)
S3method(Math,mChoice)
S3method(Mean,areg.boot)

S3method(Ops,mChoice)
S3method(Quantile,areg.boot)
S3method(Summary,mChoice)
S3method(as.character,mChoice)

S3method(as.data.frame,ffdflabel)
S3method(as.data.frame,impute)
S3method(as.data.frame,labelled)
S3method(as.data.frame,roundN)

S3method(as.data.frame,special.miss)
S3method(as.data.frame,substi)
S3method(as.discrete,default)

S3method(as.double,Cbind)
S3method(as.double,mChoice)
S3method(as.numeric,Cbind)
S3method(ceil,POSIXt)

S3method(ceil,default)
S3method(consolidate,default)
S3method(contents,data.frame)
S3method(contents,list)

S3method(datadensity,data.frame)
S3method(describe,data.frame)
S3method(describe,default)

S3method(describe,formula)
S3method(describe,matrix)
S3method(describe,vector)
S3method(dvi,latex)
S3method(dvigv,dvi)

S3method(dvigv,latex)
S3method(dvips,dvi)
S3method(dvips,latex)
S3method(format,mChoice)

S3method(format,special.miss)
S3method(format,timePOSIXt)
S3method(formula,summary.formula.cross)

S3method(hist,data.frame)
S3method(html,contents.data.frame)
S3method(html,data.frame)
S3method(html,default)
S3method(html,describe)
S3method(html,describe.single)
S3method(html,summaryM)

S3method(html,latex)
S3method(impute,default)
S3method(impute,transcan)
S3method('is.na<-',discrete)

S3method(jitter2,data.frame)
S3method(jitter2,default)
S3method(latex,bystats)
S3method(latex,bystats2)

S3method(latex,default)
S3method(latex,describe)
S3method(latex,describe.single)
S3method(latex,'function')

S3method(latex,list)
S3method(latex,responseSummary)
S3method(latex,summary.formula.cross)

S3method(latex,summary.formula.response)
S3method(latex,summary.formula.reverse)

S3method(latex,summaryM)
S3method(latex,summaryP)
S3method('length<-',discrete)
S3method(napredict,delete)

S3method(naprint,delete)
S3method(naprint,keep)
S3method(naresid,delete)
S3method(naresid,keep)
S3method(plot,areg)

S3method(plot,areg.boot)
S3method(plot,aregImpute)
S3method(plot,biVar)
S3method(plot,curveRep)
S3method(plot,drawPlot)

S3method(plot,gbayes)
S3method(plot,rm.boot)
S3method(plot,summary.formula.response)

S3method(plot,summary.formula.reverse)
S3method(plot,summaryM)
S3method(plot,varclus)

S3method(predict,areg)
S3method(predict,areg.boot)
S3method(predict,dataRep)
S3method(predict,transcan)

S3method(print,abs.error.pred)
S3method(print,areg)
S3method(print,areg.boot)
S3method(print,aregImpute)

S3method(print,biVar)
S3method(print,bystats)
S3method(print,bystats2)
S3method(print,char.list)

S3method(print,char.matrix)
S3method(print,contents.data.frame)
S3method(print,contents.list)

S3method(print,curveRep)
S3method(print,dataRep)
S3method(print,describe)
S3method(print,describe.single)

S3method(print,dvi)
S3method(print,find.matches)
S3method(print,hoeffd)
# S3method(print,html)

S3method(print,improveProb)
S3method(print,impute)
S3method(print,latex)
S3method(print,lrcum)
S3method(print,mChoice)

S3method(print,mhgr)
S3method(print,popower)
S3method(print,posamsize)
S3method(print,predict.dataRep)

S3method(print,rcorr)
S3method(print,redun)
S3method(print,responseSummary)
S3method(print,special.miss)

S3method(print,substi)
S3method(print,summary.areg.boot)
S3method(print,summary.formula.cross)

S3method(print,summary.formula.response)
S3method(print,summary.formula.reverse)

S3method(print,summary.mChoice)
S3method(print,summaryM)
S3method(print,t.test.cluster)

S3method(print,timePOSIXt)
S3method(print,transcan)
S3method(print,varclus)
S3method(rcorrcens,formula)

#S3method(round,POSIXt)
S3method(spearman2,default)
S3method(spearman2,formula)
S3method(summary,areg.boot)

S3method(summary,find.matches)
S3method(summary,formula)
S3method(summary,impute)
S3method(summary,mChoice)

S3method(summary,transcan)
#S3method(trunc,POSIXt)
S3method('units<-',default)
S3method(vcov,default)

S3method(vcov,fit.mult.impute)
S3method(xtfrm,labelled)

S3method('[',Cbind)
S3method('[',describe)
S3method('[',discrete)
S3method('[',impute)
S3method('[',mChoice)
S3method('[',pBlock)
S3method('[',roundN)
S3method('[',special.miss)
S3method('[',substi)
S3method('[',summary.formula.response)
S3method('[',transcan)
S3method('[',ynbind)
S3method('[[',discrete)
S3method('[<-',discrete)