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/usr/lib/R/site-library/knitr/help/AnIndex is in r-cran-knitr 1.17-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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knitr-package	knitr-package
all_labels	all_labels
all_patterns	all_patterns
all_rcpp_labels	all_labels
asis_output	asis_output
clean_cache	clean_cache
combine_words	combine_words
current_input	current_input
dep_auto	dep_auto
dep_prev	dep_prev
engine_output	engine_output
extract_raw_output	raw_output
fig_chunk	fig_chunk
fig_path	fig_path
hook_ffmpeg_html	hook_animation
hook_movecode	hook_document
hook_optipng	chunk_hook
hook_pdfcrop	chunk_hook
hook_plot_asciidoc	hook_plot
hook_plot_custom	chunk_hook
hook_plot_html	hook_plot
hook_plot_md	hook_plot
hook_plot_rst	hook_plot
hook_plot_tex	hook_plot
hook_plot_textile	hook_plot
hook_pngquant	chunk_hook
hook_purl	chunk_hook
hook_r2swf	hook_animation
hook_scianimator	hook_animation
image_uri	image_uri
imgur_upload	imgur_upload
include_app	include_url
include_graphics	include_graphics
include_url	include_url
inline_expr	inline_expr
kable	kable
knit	knit
knit2html	knit2html
knit2pandoc	knit2pandoc
knit2pdf	knit2pdf
knit2wp	knit2wp
knitr	knitr-package
knit_child	knit_child
knit_engines	knit_engines
knit_exit	knit_exit
knit_expand	knit_expand
knit_filter	knit_filter
knit_global	knit_global
knit_hooks	knit_hooks
knit_meta	knit_meta
knit_meta_add	knit_meta
knit_params	knit_params
knit_params_yaml	knit_params_yaml
knit_patterns	knit_patterns
knit_print	knit_print
knit_rd	knit_rd
knit_rd_all	knit_rd
knit_theme	knit_theme
knit_watch	knit_watch
load_cache	load_cache
normal_print	knit_print
opts_chunk	opts_chunk
opts_current	opts_chunk
opts_hooks	opts_hooks
opts_knit	opts_knit
opts_template	opts_template
pandoc	pandoc
pat_asciidoc	pat_fun
pat_brew	pat_fun
pat_html	pat_fun
pat_md	pat_fun
pat_rnw	pat_fun
pat_rst	pat_fun
pat_tex	pat_fun
pat_textile	pat_fun
plot_crop	plot_crop
purl	knit
rand_seed	rand_seed
raw_output	raw_output
read_chunk	read_chunk
read_demo	read_chunk
read_rforge	read_rforge
render_asciidoc	output_hooks
render_html	output_hooks
render_jekyll	output_hooks
render_latex	output_hooks
render_listings	output_hooks
render_markdown	output_hooks
render_rst	output_hooks
render_sweave	output_hooks
render_textile	output_hooks
restore_raw_output	raw_output
rocco	rocco
rst2pdf	rst2pdf
set_alias	set_alias
set_header	set_header
set_parent	set_parent
spin	spin
spin_child	spin_child
stitch	stitch
stitch_rhtml	stitch
stitch_rmd	stitch
Sweave2knitr	Sweave2knitr
vignette_engines	vignette_engines
wrap_rmd	wrap_rmd
write_bib	write_bib