/usr/lib/R/site-library/treespace/INDEX is in r-cran-treespace 1.1.1-1.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 | DengueBEASTMCC Dengue fever BEAST MCC tree
DengueSeqs Dengue fever sequences
DengueTrees BEAST analysis of Dengue fever
findGroves Identify clusters of similar trees
findMRCIs Find MRCIs
fluTrees BEAST analysis of seasonal influenza (A/H3N2)
linearMrca Linear MRCA function
makeCollapsedTree Collapse a tree into a single tip per category
medTree Geometric median tree function
multiDist Metric function for 'multiPhylo' input
plotGroves Scatterplot of groups of trees
plotGrovesD3 Scatterplot of groups of trees using
'scatterD3'
plotTreeDiff Plot tree differences
refTreeDist Metric function for comparing a reference
'phylo' to 'multiPhylo' input
relatedTreeDist Tree distance when trees have "related" tips
simulateIndTree Simulate randomised "individuals" tree
tipDiff Find tip position differences
tipsMRCAdepths Tip-tip MRCA depths
treeConcordance Tree concordance
treeDist Metric function
treeVec Tree vector function
treespace Phylogenetic tree exploration
treespaceServer Web-based tree explorer
wiwMedTree Median transmission tree
wiwTreeDist Transmission tree distance
woodmiceTrees Bootstrap trees from woodmouse dataset
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