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"  27									     "
"  98  32									     "
" 120   0 905								     "
"  36  23   0   0								     "
"  89 246 103 134   0							     "
" 198   1 148 1153  0 716							     "
" 240   9 139 125  11  28  81						     "
"  23 240 535  86  28 606  43  10						     "
"  65  64  77  24  44  18  61   0   7					     "
"  41  15  34   0   0  73  11   7  44 257					     "
"  26 464 318  71   0 153  83  27  26  46  18				     "
"  72  90   1   0   0 114  30  17   0 336 527 243				     "
"  18  14  14   0   0   0   0  15  48 196 157   0  92			     "
" 250 103  42  13  19 153  51  34  94  12  32  33  17  11			     "
" 409 154 495  95 161  56  79 234  35  24  17  96  62  46 245		     "
" 371  26 229  66  16  53  34  30  22 192  33 136 104  13  78 550		     "
"   0 201  23   0   0   0   0   0  27   0  46   0   0  76   0  75   0	     "
"  24   8  95   0  96   0  22   0 127  37  28  13   0 698   0  34  42  61	     "
" 208  24  15  18  49  35  37  54  44 889 175  10 258  12  48  30 157   0  28  "
" 0.087127 0.040904 0.040432 0.046872 0.033474 0.038255 0.049530 "
" 0.088612 0.033618 0.036886 0.085357 0.080482 0.014753 0.039772 "
" 0.050680 0.069577 0.058542 0.010494 0.029916 0.064718 "
" Ala Arg Asn Asp Cys Gln Glu Gly His Ile Leu Lys Met Phe Pro Ser Thr Trp Tyr Val "
" S_ij = S_ji and PI_i for the Dayhoff model, with the rate Q_ij=S_ij*PI_j "
" The rest of the file is not used. "
" Prepared by Z. Yang, March 1995. "
" See the following reference for notation used here: "
" Yang, Z., R. Nielsen and M. Hasegawa. 1998. Models of amino acid substitution and "
" applications to mitochondrial protein evolution. Mol. Biol. Evol. 15:1600-1611. "
" ----------------------------------------------------------------------- "
"       "
"  30									    "
" 109  17									    "
" 154   0 532								    "
"  33  10   0   0 							    "
"  93 120  50  76   0							    "
" 266   0  94 831   0 422							    "
" 579  10 156 162  10  30 112						    "
"  21 103 226  43  10 243  23  10 					    "
"  66  30  36  13  17   8  35   0   3					    "
"  95  17  37   0   0  75  15  17  40 253					    "
"  57 477 322  85   0 147 104  60  23  43  39				    "
"  29  17   0   0   0  20   7   7   0  57 207  90				    "
"  20   7   7   0   0   0   0  17  20  90 167   0  17 			    "
" 345  67  27  10  10  93  40  49  50   7  43  43   4   7			    "
" 772 137 432  98 117  47  86 450  26  20  32 168  20  40 269		    "
" 590  20 169  57  10  37  31  50  14 129  52 200  28  10  73 696		    "
"   0  27   3   0   0   0   0   0   3   0  13   0   0  10   0  17  0	    "
"  20   3  36   0  30   0  10   0  40  13  23  10   0 260   0  22  23  6	    "
" 365  20  13  17  33  27  37  97  30 661 303  17  77  10  50  43 186  0  17   "
"  A   R   N   D   C   Q   E   G   H   I   L   K   M   F   P   S   T   W   Y  V "
" Ala Arg Asn Asp Cys Gln Glu Gly His Ile Leu Lys Met Phe Pro Ser Thr Trp Tyr Val "
" Accepted point mutations (x10) Figure 80 (Dayhoff 1978) "
" ------------------------------------------------------- "
" A 100 /* Ala */		    A 0.087 /* Ala */ "
" R  65 /* Arg */		    R 0.041 /* Arg */ "
" N 134 /* Asn */		    N 0.040 /* Asn */ "
" D 106 /* Asp */		    D 0.047 /* Asp */ "
" C  20 /* Cys */		    C 0.033 /* Cys */ "
" Q  93 /* Gln */		    Q 0.038 /* Gln */ "
" E 102 /* Glu */		    E 0.050 /* Glu */ "
" G  49 /* Gly */             G 0.089 /* Gly */ "
" H  66 /* His */		    H 0.034 /* His */ "
" I  96 /* Ile */		    I 0.037 /* Ile */ "
" L  40 /* Leu */		    L 0.085 /* Leu */ "
" K  56 /* Lys */		    K 0.081 /* Lys */ "
" M  94 /* Met */		    M 0.015 /* Met */ "
" F  41 /* Phe */		    F 0.040 /* Phe */ "
" P  56 /* Pro */		    P 0.051 /* Pro */ "
" S 120 /* Ser */		    S 0.070 /* Ser */ "
" T  97 /* Thr */		    T 0.058 /* Thr */ "
" W  18 /* Trp */		    W 0.010 /* Trp */ "
" Y  41 /* Tyr */		    Y 0.030 /* Tyr */ "
" V  74 /* Val */		    V 0.065 /* Val */ "
" scale factor = SUM_OF_PRODUCT = 75.246 "
" Relative Mutability         The equilibrium freqs. "
" (Table 21)		    Table 22     "
" (Dayhoff 1978)		    Dayhoff (1978)         "
" ---------------------------------------------------------------- "