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Title: dipSPAdes Manual
Author: Dmitry Antipov, Anton Bankevich, Alexey Gurevich, a.o.
Abstract: dipSPAdes is a genome assembler designed specifically for diploid highly
polymorphic genomes based on SPAdes. It takes advantage of divergence between
haplomes in repetitive genome regions to resolve them and construct longer
contigs. dipSPAdes produces consensus contigs (representing a consensus of both
haplomes for the orthologous regions) and performs haplotype assembly. Note
that dipSPAdes can only benefit from high polymorphism rate (at least 0.4%).
For the data with low polymorphism rate no improvement in terms of N50 vs
consentional assemblers is expected.
Section: Science/Biology
Format: html
Index: /usr/share/doc/spades/dipspades_manual.html
Files: /usr/share/doc/spades/dipspades_manual.html
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