This file is indexed.

/usr/share/kde4/services/nepomuk.protocol is in kde-runtime-data 4:4.8.2-0ubuntu2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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[Protocol]
exec=kio_nepomuk
protocol=nepomuk
input=none
output=filesystem
reading=true
writing=false
deleting=true
linking=false
makedir=false
moving=false
listing=Name,Type,Size,Date,AccessDate,Access,Owner,Group,Link
source=false
Icon=nepomuk
Class=:local
determineMimetypeFromExtension=false
maxInstances=10