This file is indexed.

/usr/include/deal.II/lac/householder.h is in libdeal.ii-dev 6.3.1-1.1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
//---------------------------------------------------------------------------
//    $Id: householder.h 20287 2010-01-05 10:16:05Z janssen $
//    Version: $Name$
//
//    Copyright (C) 2005, 2006, 2007, 2008 by the deal.II authors
//
//    This file is subject to QPL and may not be  distributed
//    without copyright and license information. Please refer
//    to the file deal.II/doc/license.html for the  text  and
//    further information on this license.
//
//---------------------------------------------------------------------------
#ifndef __deal2__householder_h
#define __deal2__householder_h


#include <cmath>
#include <base/config.h>
#include <lac/full_matrix.h>
#include <lac/vector_memory.h>

#include <vector>

DEAL_II_NAMESPACE_OPEN


// forward declarations
template<typename number> class Vector;


/*! @addtogroup Matrix2
 *@{
 */


/**
 * QR-decomposition of a full matrix.
 *
 * Whenever an object of this class is created, it copies the matrix
 * given and computes its QR-decomposition by Householder
 * algorithm. Then, the function least_squares() can be used to
 * compute the vector <i>x</i> minimizing <i>||Ax-b||</i> for a given
 * vector <i>b</i>.
 *
 * @note Instantiations for this template are provided for <tt>@<float@> and
 * @<double@></tt>; others can be generated in application programs (see the
 * section on @ref Instantiations in the manual).
 *
 * @author Guido Kanschat, 2005
 */
template<typename number>
class Householder : private FullMatrix<number>
{
  public:
				     /**
				      * Create an empty object.
				      */
    Householder ();

				     /**
				      * Create an object holding the
				      * QR-decomposition of a matrix.
				      */
    template<typename number2>
    Householder (const FullMatrix<number2>&);

				     /**
				      * Compute the QR-decomposition
				      * of another matrix.
				      */
    template<typename number2>
    void
    initialize (const FullMatrix<number2>&);
    
				     /**
				      * Solve the least-squares
				      * problem for the right hand
				      * side <tt>src</tt>. The return
				      * value is the Euclidean norm of
				      * the approximation error.
				      *
				      * @arg @c dst contains the
				      * solution of the least squares
				      * problem on return.
				      *
				      * @arg @c src contains the right
				      * hand side <i>b</i> of the
				      * least squares problem. It will
				      * be changed during the algorithm
				      * and is unusable on return.
				      */
    template<typename number2>
    double least_squares (Vector<number2> &dst,
			  const Vector<number2> &src) const;

				     /**
                                      * This function does the same as 
                                      * the one for BlockVectors.
				      */
    template<typename number2>
    double least_squares (BlockVector<number2> &dst,
			  const BlockVector<number2> &src) const;

  private:
				     /**
				      * Storage for the diagonal
				      * elements of the orthogonal
				      * transformation.
				      */
    std::vector<number> diagonal;
};

/*@}*/

#ifndef DOXYGEN
/*-------------------------Inline functions -------------------------------*/

// QR-transformation cf. Stoer 1 4.8.2 (p. 191)

template <typename number>
Householder<number>::Householder()		
{}



template <typename number>
template <typename number2>
void
Householder<number>::initialize(const FullMatrix<number2>& M)
{
  const unsigned int m = M.n_rows(), n = M.n_cols();
  this->reinit(m, n);
  this->fill(M);
  Assert (!this->empty(), typename FullMatrix<number2>::ExcEmptyMatrix());
  diagonal.resize(m);

				   // m > n, src.n() = m
  Assert (this->n_cols() <= this->n_rows(),
	  ExcDimensionMismatch(this->n_cols(), this->n_rows()));

  for (unsigned int j=0 ; j<n ; ++j)
  {
    number2 sigma = 0;
    unsigned int i;
				     // sigma = ||v||^2
    for (i=j ; i<m ; ++i)
      sigma += this->el(i,j)*this->el(i,j);
				     // We are ready if the column is
				     // empty. Are we?
    if (std::fabs(sigma) < 1.e-15) return;
    
    number2 s = (this->el(j,j) < 0) ? std::sqrt(sigma) : -std::sqrt(sigma);
				     // 
    number2 beta = std::sqrt(1./(sigma-s*this->el(j,j)));

				     // Make column j the Householder
				     // vector, store first entry in
				     // diagonal
    diagonal[j] = beta*(this->el(j,j) - s);
    this->el(j,j) = s;

    for (i=j+1 ; i<m ; ++i)
      this->el(i,j) *= beta;


				     // For all subsequent columns do
				     // the Householder reflexion
    for (unsigned int k=j+1 ; k<n ; ++k)
    {
      number2 sum = diagonal[j]*this->el(j,k);
      for (i=j+1 ; i<m ; ++i)
	sum += this->el(i,j)*this->el(i,k);

      this->el(j,k) -= sum*this->diagonal[j];
      for (i=j+1 ; i<m ; ++i)
	this->el(i,k) -= sum*this->el(i,j);
    }    
  }
}


template <typename number>
template <typename number2>
Householder<number>::Householder(const FullMatrix<number2>& M)		
{
  initialize(M);
}


template <typename number>
template <typename number2>
double
Householder<number>::least_squares (Vector<number2>& dst,
				    const Vector<number2>& src) const
{
  Assert (!this->empty(), typename FullMatrix<number2>::ExcEmptyMatrix());
  AssertDimension(dst.size(), this->n());
  AssertDimension(src.size(), this->m());

  const unsigned int m = this->m(), n = this->n();
  
  GrowingVectorMemory<Vector<number2> > mem;
  Vector<number2>* aux = mem.alloc();
  aux->reinit(src, true);
  *aux = src;
				   // m > n, m = src.n, n = dst.n

				   // Multiply Q_n ... Q_2 Q_1 src
				   // Where Q_i = I-v_i v_i^T
  for (unsigned int j=0;j<n;++j)
    {
				       // sum = v_i^T dst
      number2 sum = diagonal[j]* (*aux)(j);
      for (unsigned int i=j+1 ; i<m ; ++i)
	sum += this->el(i,j)*(*aux)(i);
				       // dst -= v * sum
      (*aux)(j) -= sum*diagonal[j];
      for (unsigned int i=j+1 ; i<m ; ++i)
	(*aux)(i) -= sum*this->el(i,j);
    }
				   // Compute norm of residual
  number2 sum = 0.;
  for (unsigned int i=n ; i<m ; ++i)
    sum += (*aux)(i) * (*aux)(i);
				   // Compute solution
  this->backward(dst, *aux);

  mem.free(aux);
  
  return std::sqrt(sum);
}

template <typename number>
template <typename number2>
double
Householder<number>::least_squares (BlockVector<number2>& dst,
				    const BlockVector<number2>& src) const
{
  Assert (!this->empty(), typename FullMatrix<number2>::ExcEmptyMatrix());
  AssertDimension(dst.size(), this->n());
  AssertDimension(src.size(), this->m());

  const unsigned int m = this->m(), n = this->n();
  
  GrowingVectorMemory<BlockVector<number2> > mem;
  BlockVector<number2>* aux = mem.alloc();
  aux->reinit(src, true);
  *aux = src;
				   // m > n, m = src.n, n = dst.n

				   // Multiply Q_n ... Q_2 Q_1 src
				   // Where Q_i = I-v_i v_i^T
  for (unsigned int j=0;j<n;++j)
    {
				       // sum = v_i^T dst
      number2 sum = diagonal[j]* (*aux)(j);
      for (unsigned int i=j+1 ; i<m ; ++i)
	sum += this->el(i,j)*(*aux)(i);
				       // dst -= v * sum
      (*aux)(j) -= sum*diagonal[j];
      for (unsigned int i=j+1 ; i<m ; ++i)
	(*aux)(i) -= sum*this->el(i,j);
    }
				   // Compute norm of residual
  number2 sum = 0.;
  for (unsigned int i=n ; i<m ; ++i)
    sum += (*aux)(i) * (*aux)(i);
                                   //backward works for 
                                   //Vectors only, so copy 
                                   //them before
  Vector<number2> v_dst, v_aux;
  v_dst = dst;
  v_aux = *aux;
				   // Compute solution
  this->backward(v_dst, v_aux);

  mem.free(aux);
  
  return std::sqrt(sum);
}


#endif // DOXYGEN

DEAL_II_NAMESPACE_CLOSE

#endif