This file is indexed.

/usr/include/deal.II/multigrid/mg_transfer.h is in libdeal.ii-dev 6.3.1-1.1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
//---------------------------------------------------------------------------
//    $Id: mg_transfer.h 20871 2010-03-21 19:22:22Z kanschat $
//    Version: $Name$
//
//    Copyright (C) 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2009, 2010 by the deal.II authors
//
//    This file is subject to QPL and may not be  distributed
//    without copyright and license information. Please refer
//    to the file deal.II/doc/license.html for the  text  and
//    further information on this license.
//
//---------------------------------------------------------------------------
#ifndef __deal2__mg_transfer_h
#define __deal2__mg_transfer_h

#include <base/config.h>

#include <lac/block_vector.h>
#include <lac/constraint_matrix.h>
#ifdef DEAL_PREFER_MATRIX_EZ
#  include <lac/sparse_matrix_ez.h>
#  include <lac/block_sparse_matrix_ez.h>
#else
#  include <lac/sparsity_pattern.h>
#  include <lac/block_sparsity_pattern.h>
#endif
#include <lac/vector_memory.h>

#include <multigrid/mg_base.h>
#include <base/mg_level_object.h>



#include <dofs/dof_handler.h>

#include <base/std_cxx1x/shared_ptr.h>


DEAL_II_NAMESPACE_OPEN


template <int dim, int spacedim> class MGDoFHandler;

/*
 * MGTransferBase is defined in mg_base.h
 */

/*!@addtogroup mg */
/*@{*/

/**
 * Implementation of the MGTransferBase interface for which the transfer
 * operations are prebuilt upon construction of the object of this class as
 * matrices. This is the fast way, since it only needs to build the operation
 * once by looping over all cells and storing the result in a matrix for
 * each level, but requires additional memory.
 *
 * See MGTransferBase to find out which of the transfer classes
 * is best for your needs.
 *
 * @author Wolfgang Bangerth, Guido Kanschat, 1999-2004
 */
template <class VECTOR>
class MGTransferPrebuilt : public MGTransferBase<VECTOR>
{
  public:
				     /**
				      * Constructor without constraint
				      * matrices. Use this constructor
				      * only with discontinuous finite
				      * elements or with no local
				      * refinement.
				      */
    MGTransferPrebuilt ();

				     /**
				      * Constructor with constraint matrices.
				      */
    MGTransferPrebuilt (const ConstraintMatrix& constraints);
				     /**
				      * Destructor.
				      */
    virtual ~MGTransferPrebuilt ();
				     /**
				      * Actually build the prolongation
				      * matrices for each level.
				      */
    template <int dim, int spacedim>
    void build_matrices (const MGDoFHandler<dim,spacedim> &mg_dof,
    const std::vector<std::set<unsigned int> >&boundary_indices
			 = std::vector<std::set<unsigned int> >()
        );

    virtual void prolongate (const unsigned int    to_level,
			     VECTOR       &dst,
			     const VECTOR &src) const;

    virtual void restrict_and_add (const unsigned int    from_level,
				   VECTOR       &dst,
				   const VECTOR &src) const;

    				     /**
				      * Transfer from a vector on the
				      * global grid to vectors defined
				      * on each of the levels
				      * separately, i.a. an @p MGVector.
				      */
    template <int dim, class InVector, int spacedim>
    void
    copy_to_mg (const MGDoFHandler<dim,spacedim>& mg_dof,
		MGLevelObject<VECTOR>& dst,
		const InVector& src) const;

				     /**
				      * Transfer from multi-level vector to
				      * normal vector.
				      *
				      * Copies data from active
				      * portions of an MGVector into
				      * the respective positions of a
				      * <tt>Vector<number></tt>. In order to
				      * keep the result consistent,
				      * constrained degrees of freedom
				      * are set to zero.
				      */
    template <int dim, class OutVector, int spacedim>
    void
    copy_from_mg (const MGDoFHandler<dim,spacedim>& mg_dof,
		  OutVector& dst,
		  const MGLevelObject<VECTOR> &src) const;

				     /**
				      * Add a multi-level vector to a
				      * normal vector.
				      *
				      * Works as the previous
				      * function, but probably not for
				      * continuous elements.
				      */
    template <int dim, class OutVector, int spacedim>
    void
    copy_from_mg_add (const MGDoFHandler<dim,spacedim>& mg_dof,
		      OutVector& dst,
		      const MGLevelObject<VECTOR>& src) const;

				     /**
				      * If this object operates on
				      * BlockVector objects, we need
				      * to describe how the individual
				      * vector components are mapped
				      * to the blocks of a vector. For
				      * example, for a Stokes system,
				      * we have dim+1 vector
				      * components for velocity and
				      * pressure, but we may want to
				      * use block vectors with only
				      * two blocks for all velocities
				      * in one block, and the pressure
				      * variables in the other.
				      *
				      * By default, if this function
				      * is not called, block vectors
				      * have as many blocks as the
				      * finite element has vector
				      * components. However, this can
				      * be changed by calling this
				      * function with an array that
				      * describes how vector
				      * components are to be grouped
				      * into blocks. The meaning of
				      * the argument is the same as
				      * the one given to the
				      * DoFTools::count_dofs_per_component
				      * function.
				      */
    void
    set_component_to_block_map (const std::vector<unsigned int> &map);

				     /**
				      * Finite element does not
				      * provide prolongation matrices.
				      */
    DeclException0(ExcNoProlongation);

				     /**
				      * Call @p build_matrices
				      * function first.
				      */
    DeclException0(ExcMatricesNotBuilt);

    				     /**
				      * Memory used by this object.
				      */
    unsigned int memory_consumption () const;


  private:

				   /**
				    * Sizes of the multi-level vectors.
				    */
    std::vector<unsigned int> sizes;

				     /**
				      * Sparsity patterns for transfer
				      * matrices.
				      */
    std::vector<std_cxx1x::shared_ptr<SparsityPattern> >   prolongation_sparsities;

				     /**
				      * The actual prolongation matrix.
				      * column indices belong to the
				      * dof indices of the mother cell,
				      * i.e. the coarse level.
				      * while row indices belong to the
				      * child cell, i.e. the fine level.
				      */
    std::vector<std_cxx1x::shared_ptr<SparseMatrix<double> > > prolongation_matrices;

				     /**
				      * Mapping for the
				      * <tt>copy_to/from_mg</tt>-functions.
				      * The data is first the global
				      * index, then the level index.
				     */
    std::vector<std::vector<std::pair<unsigned int, unsigned int> > >
      copy_indices;

				     /**
				      * The vector that stores what
				      * has been given to the
				      * set_component_to_block_map()
				      * function.
				      */
    std::vector<unsigned int> component_to_block_map;

				     /**
				      * Degrees of freedom on the
				      * refinement edge excluding
				      * those on the boundary.
				      */
    std::vector<std::vector<bool> > interface_dofs;
				     /**
				      * The constraints of the global
				      * system.
				      */
    SmartPointer<const ConstraintMatrix> constraints;
};


/*@}*/


DEAL_II_NAMESPACE_CLOSE

#endif