This file is indexed.

/usr/include/deal.II/numerics/mesh_worker_info.templates.h is in libdeal.ii-dev 6.3.1-1.1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
//---------------------------------------------------------------------------
//    $Id: mesh_worker_info.templates.h 21218 2010-06-16 22:15:20Z kanschat $
//    Version: $Name$
//
//    Copyright (C) 2009, 2010 by the deal.II authors
//
//    This file is subject to QPL and may not be  distributed
//    without copyright and license information. Please refer
//    to the file deal.II/doc/license.html for the  text  and
//    further information on this license.
//
//---------------------------------------------------------------------------


#include <numerics/mesh_worker_info.h>
#include <base/quadrature_lib.h>

DEAL_II_NAMESPACE_OPEN


namespace MeshWorker
{
  template <int dim, int spacedim, typename number>
  DoFInfo<dim,spacedim,number>::DoFInfo(const BlockInfo& info)
		  : block_info(&info, typeid(*this).name())
  {}


  template <int dim, int spacedim, typename number>
  DoFInfo<dim,spacedim,number>::DoFInfo()
  {}


  template <int dim, int spacedim, typename number>
  void
  DoFInfo<dim,spacedim,number>::get_indices(const typename DoFHandler<dim, spacedim>::cell_iterator& c)
  {
    if (!c->has_children())
      {
	indices.resize(c->get_fe().dofs_per_cell);
	
	if (block_info == 0 || block_info->local().size() == 0)
	  c->get_dof_indices(indices);
	else
	  {
	    indices_org.resize(c->get_fe().dofs_per_cell);
	    c->get_dof_indices(indices_org);
	    for (unsigned int i=0;i<indices.size();++i)
	      indices[this->block_info->renumber(i)] = indices_org[i];
	  }
      }
    else
      indices.resize(0);

    level_cell = false;
  }


  template <int dim, int spacedim, typename number>
  void
  DoFInfo<dim,spacedim,number>::get_indices(const typename MGDoFHandler<dim, spacedim>::cell_iterator& c)
  {
    indices.resize(c->get_fe().dofs_per_cell);
  
    if (block_info == 0 || block_info->local().size() == 0)
      c->get_mg_dof_indices(indices);
    else
      {
	indices_org.resize(c->get_fe().dofs_per_cell);
	c->get_mg_dof_indices(indices_org);
	for (unsigned int i=0;i<indices.size();++i)
	  indices[this->block_info->renumber(i)] = indices_org[i];
      }
    level_cell = true;
  }

//----------------------------------------------------------------------//

  template<int dim, int sdim>
  IntegrationInfo<dim,sdim>::IntegrationInfo()
		  :
		  fevalv(0),
		  multigrid(false),
		  global_data(boost::shared_ptr<VectorDataBase<dim, sdim> >(new VectorDataBase<dim, sdim>))
  {}

  
  template<int dim, int sdim>
  IntegrationInfo<dim,sdim>::IntegrationInfo(const IntegrationInfo<dim,sdim>& other)
		  :
		  multigrid(other.multigrid),
		  values(other.values),
		  gradients(other.gradients),
		  hessians(other.hessians),
		  global_data(other.global_data),
		  n_components(other.n_components)
  {
    fevalv.resize(other.fevalv.size());
    for (unsigned int i=0;i<other.fevalv.size();++i)
      {
	const FEValuesBase<dim,sdim>& p = *other.fevalv[i];
	const FEValues<dim,sdim>* pc = dynamic_cast<const FEValues<dim,sdim>*>(&p);
	const FEFaceValues<dim,sdim>* pf = dynamic_cast<const FEFaceValues<dim,sdim>*>(&p);
	const FESubfaceValues<dim,sdim>* ps = dynamic_cast<const FESubfaceValues<dim,sdim>*>(&p);
	
	if (pc != 0)
	  fevalv[i] = boost::shared_ptr<FEValuesBase<dim,sdim> > (
	    reinterpret_cast<FEFaceValuesBase<dim,sdim>*>(
	      new FEValues<dim,sdim> (pc->get_mapping(), pc->get_fe(),
				      pc->get_quadrature(), pc->get_update_flags())));
	else if (pf != 0)
	  fevalv[i] = boost::shared_ptr<FEValuesBase<dim,sdim> > (
	    new FEFaceValues<dim,sdim> (pf->get_mapping(), pf->get_fe(), pf->get_quadrature(), pf->get_update_flags()));
	else if (ps != 0)
	  fevalv[i] = boost::shared_ptr<FEValuesBase<dim,sdim> > (
	    new FESubfaceValues<dim,sdim> (ps->get_mapping(), ps->get_fe(), ps->get_quadrature(), ps->get_update_flags()));
	else
	  Assert(false, ExcInternalError());
      }
  }
  

  template<int dim, int sdim>
  void
  IntegrationInfo<dim,sdim>::initialize_data(
    const boost::shared_ptr<VectorDataBase<dim,sdim> > data)
  {
    global_data = data;
    const unsigned int nqp = fevalv[0]->n_quadrature_points;
    
    values.resize(global_data->n_values());
//    deallog << "values: " << values.size() << " [";
				     // For all selected finite
				     // element functions
    for (unsigned int i=0;i<values.size();++i)
      {
	values[i].resize(n_components);
//	deallog << ' ' << values[i].size() << " {";
					 // For all components
	for (unsigned int j=0;j<values[i].size();++j)
	  {
	    values[i][j].resize(nqp);
//	    deallog << ' ' << values[i][j].size();
	  }
//	deallog << " }";
      }
//    deallog << " ]" << std::endl;
    
    gradients.resize(global_data->n_gradients());
				     // For all selected finite
				     // element functions
    for (unsigned int i=0;i<gradients.size();++i)
      {
	gradients[i].resize(n_components);
					 // For all components
	for (unsigned int j=0;j<gradients[i].size();++j)
	  {
	    gradients[i][j].resize(nqp);
	  }
      }
    
    hessians.resize(global_data->n_hessians());
				     // For all selected finite
				     // element functions
    for (unsigned int i=0;i<hessians.size();++i)
      {
	hessians[i].resize(n_components);
					 // For all components
	for (unsigned int j=0;j<hessians[i].size();++j)
	  {
	    hessians[i][j].resize(nqp);
	  }
      }
  }


  template<int dim, int sdim>
  void
  IntegrationInfo<dim,sdim>::clear()
  {
    fevalv.resize(0);
  }



  template<int dim, int sdim>
  template <typename number>
  void
  IntegrationInfo<dim,sdim>::fill_local_data(const DoFInfo<dim, sdim, number>& info, bool split_fevalues)
  {
     if (split_fevalues)
       {
	unsigned int comp = 0;
					 // Loop over all blocks
	for (unsigned int b=0;b<info.block_info->local().size();++b)
	  {
	    const unsigned int fe_no = info.block_info->base_element(b);
	    const FEValuesBase<dim>& fe = this->fe_values(fe_no);
	    const unsigned int n_comp = fe.get_fe().n_components();
	    const unsigned int block_start = info.block_info->local().block_start(b);
	    const unsigned int block_size = info.block_info->local().block_size(b);
	    
            if(info.level_cell)
	    this->global_data->mg_fill(values, gradients, hessians, fe, info.cell->level(), info.indices,
				    comp, n_comp, block_start, block_size);
            else
	    this->global_data->fill(values, gradients, hessians, fe, info.indices,
				    comp, n_comp, block_start, block_size);
 	    comp += n_comp;
	  }
       }
     else
       {
	 const FEValuesBase<dim>& fe = this->fe_values(0);
	 const unsigned int n_comp = fe.get_fe().n_components();
         if(info.level_cell)
	 this->global_data->mg_fill(values, gradients, hessians, fe, info.cell->level(), info.indices,
				 0, n_comp, 0, info.indices.size());
         else
	 this->global_data->fill(values, gradients, hessians, fe, info.indices,
				 0, n_comp, 0, info.indices.size());
       }
  }
  
  
//----------------------------------------------------------------------//
  
  
  template<int dim, int sdim>
  void
  IntegrationInfoBox<dim,sdim>::initialize_update_flags ()
  {
    cell_flags = update_JxW_values;
    boundary_flags = UpdateFlags(update_JxW_values | update_normal_vectors);
    face_flags = boundary_flags;
    neighbor_flags = update_default;
    
    if (cell_selector.has_values() != 0) cell_flags |= update_values;
    if (cell_selector.has_gradients() != 0) cell_flags |= update_gradients;
    if (cell_selector.has_hessians() != 0) cell_flags |= update_hessians;
    
    if (boundary_selector.has_values() != 0) boundary_flags |= update_values;
    if (boundary_selector.has_gradients() != 0) boundary_flags |= update_gradients;
    if (boundary_selector.has_hessians() != 0) boundary_flags |= update_hessians;
    
    if (face_selector.has_values() != 0) face_flags |= update_values;
    if (face_selector.has_gradients() != 0) face_flags |= update_gradients;
    if (face_selector.has_hessians() != 0) face_flags |= update_hessians;
    
    if (face_selector.has_values() != 0) neighbor_flags |= update_values;
    if (face_selector.has_gradients() != 0) neighbor_flags |= update_gradients;
    if (face_selector.has_hessians() != 0) neighbor_flags |= update_hessians;  
  }
  
  
  template <int dim, int sdim>
  void
  IntegrationInfoBox<dim,sdim>::add_update_flags(
    const UpdateFlags flags,
    bool cell,
    bool boundary,
    bool face,
    bool neighbor)
  {
    if (cell) cell_flags |= flags;
    if (boundary) boundary_flags |= flags;
    if (face) face_flags |= flags;
    if (neighbor) neighbor_flags |= flags;  
  }
  
  
  template <int dim, int sdim>
  void
  IntegrationInfoBox<dim,sdim>::initialize_gauss_quadrature(
    unsigned int cp,
    unsigned int bp,
    unsigned int fp)
  {
    cell_quadrature = QGauss<dim>(cp);
    boundary_quadrature = QGauss<dim-1>(bp);
    face_quadrature = QGauss<dim-1>(fp);

  }
  
  
  template <int dim, int sdim>
  void
  IntegrationInfoBox<dim,sdim>::
  initialize(const FiniteElement<dim,sdim>& el,
	     const Mapping<dim,sdim>& mapping,
	     const BlockInfo* block_info)
  {
    cell.initialize<FEValues<dim,sdim> >(el, mapping, cell_quadrature,
					 cell_flags, block_info);
    boundary.initialize<FEFaceValues<dim,sdim> >(el, mapping, boundary_quadrature,
						 boundary_flags, block_info);
    face.initialize<FEFaceValues<dim,sdim> >(el, mapping, face_quadrature,
					     face_flags, block_info);
    subface.initialize<FESubfaceValues<dim,sdim> >(el, mapping, face_quadrature,
						   face_flags, block_info);
    neighbor.initialize<FEFaceValues<dim,sdim> >(el, mapping, face_quadrature,
						 neighbor_flags, block_info);
  }
}


DEAL_II_NAMESPACE_CLOSE