This file is indexed.

/usr/share/ncbi/data/ncbipnam.dat is in ncbi-data 6.1.20110713-3ubuntu2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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> a '>' or a ';' in the first column is a comment and is ignored
;
; proteins possibly interacting nucleic acids
;
ATPASE_
BZIP_BASIC
DNAA
DNASE_
DNA_MISMATCH
HELICASE
HELIX_LOOP_HELIX
KINASE
LIGASE
NUCLEAR_RECEPTOR
NUCLEASE
PHOSPHA
POLYMERASE
RECA
RECF_
RECOMBINASE
RIBONUCLEASE
RNASE_
RNA_POL
SIGMA
SSB_
TRANSPOSASE
ZINC_FINGER
ZN_FINGER