/usr/share/pyshared/pandas/tests/test_frame.py is in python-pandas 0.7.0-1.
This file is owned by root:root, with mode 0o644.
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from copy import deepcopy
from datetime import datetime, timedelta
from StringIO import StringIO
import cPickle as pickle
import operator
import os
import sys
import unittest
import nose
from numpy import random, nan
from numpy.random import randn
import numpy as np
import numpy.ma as ma
import pandas as pan
import pandas.core.common as com
import pandas.core.format as fmt
import pandas.core.datetools as datetools
from pandas.core.index import NULL_INDEX
from pandas.core.api import (DataFrame, Index, Series, notnull, isnull,
MultiIndex)
from pandas.io.parsers import (ExcelFile, ExcelWriter)
from pandas.util.testing import (assert_almost_equal,
assert_series_equal,
assert_frame_equal)
import pandas.util.testing as tm
import pandas._tseries as lib
#-------------------------------------------------------------------------------
# DataFrame test cases
JOIN_TYPES = ['inner', 'outer', 'left', 'right']
class CheckIndexing(object):
def test_getitem(self):
# slicing
sl = self.frame[:20]
self.assertEqual(20, len(sl.index))
# column access
for _, series in sl.iteritems():
self.assertEqual(20, len(series.index))
self.assert_(tm.equalContents(series.index, sl.index))
for key, _ in self.frame._series.iteritems():
self.assert_(self.frame[key] is not None)
self.assert_('random' not in self.frame)
self.assertRaises(Exception, self.frame.__getitem__, 'random')
def test_get(self):
b = self.frame.get('B')
assert_series_equal(b, self.frame['B'])
self.assert_(self.frame.get('foo') is None)
assert_series_equal(self.frame.get('foo', self.frame['B']),
self.frame['B'])
def test_getitem_iterator(self):
idx = iter(['A', 'B', 'C'])
result = self.frame.ix[:, idx]
expected = self.frame.ix[:, ['A', 'B', 'C']]
assert_frame_equal(result, expected)
def test_getitem_list(self):
self.frame.columns.name = 'foo'
result = self.frame[['B', 'A']]
result2 = self.frame[Index(['B', 'A'])]
expected = self.frame.ix[:, ['B', 'A']]
assert_frame_equal(result, expected)
assert_frame_equal(result2, expected)
self.assertEqual(result.columns.name, 'foo')
self.assertRaises(Exception, self.frame.__getitem__,
['B', 'A', 'foo'])
self.assertRaises(Exception, self.frame.__getitem__,
Index(['B', 'A', 'foo']))
# tuples
df = DataFrame(randn(8, 3),
columns=Index([('foo', 'bar'), ('baz', 'qux'),
('peek', 'aboo')], name='sth'))
result = df[[('foo', 'bar'), ('baz', 'qux')]]
expected = df.ix[:, :2]
assert_frame_equal(result, expected)
self.assertEqual(result.columns.name, 'sth')
def test_setitem_list(self):
self.frame['E'] = 'foo'
data = self.frame[['A', 'B']]
self.frame[['B', 'A']] = data
assert_series_equal(self.frame['B'], data['A'])
assert_series_equal(self.frame['A'], data['B'])
def test_setitem_list_not_dataframe(self):
data = np.random.randn(len(self.frame), 2)
self.frame[['A', 'B']] = data
assert_almost_equal(self.frame[['A', 'B']].values, data)
def test_setitem_list_of_tuples(self):
tuples = zip(self.frame['A'], self.frame['B'])
self.frame['tuples'] = tuples
result = self.frame['tuples']
expected = Series(tuples, index=self.frame.index)
assert_series_equal(result, expected)
def test_getitem_boolean(self):
# boolean indexing
d = self.tsframe.index[10]
indexer = self.tsframe.index > d
indexer_obj = indexer.astype(object)
subindex = self.tsframe.index[indexer]
subframe = self.tsframe[indexer]
self.assert_(np.array_equal(subindex, subframe.index))
self.assertRaises(Exception, self.tsframe.__getitem__, indexer[:-1])
subframe_obj = self.tsframe[indexer_obj]
assert_frame_equal(subframe_obj, subframe)
def test_getitem_boolean_list(self):
df = DataFrame(np.arange(12).reshape(3,4))
def _checkit(lst):
result = df[lst]
expected = df.ix[df.index[lst]]
assert_frame_equal(result, expected)
_checkit([True, False, True])
_checkit([True, True, True])
_checkit([False, False, False])
def test_getattr(self):
tm.assert_series_equal(self.frame.A, self.frame['A'])
self.assertRaises(AttributeError, getattr, self.frame,
'NONEXISTENT_NAME')
def test_setitem(self):
# not sure what else to do here
series = self.frame['A'][::2]
self.frame['col5'] = series
self.assert_('col5' in self.frame)
tm.assert_dict_equal(series, self.frame['col5'],
compare_keys=False)
series = self.frame['A']
self.frame['col6'] = series
tm.assert_dict_equal(series, self.frame['col6'],
compare_keys=False)
self.assertRaises(Exception, self.frame.__setitem__,
randn(len(self.frame) + 1))
# set ndarray
arr = randn(len(self.frame))
self.frame['col9'] = arr
self.assert_((self.frame['col9'] == arr).all())
self.frame['col7'] = 5
assert((self.frame['col7'] == 5).all())
self.frame['col0'] = 3.14
assert((self.frame['col0'] == 3.14).all())
self.frame['col8'] = 'foo'
assert((self.frame['col8'] == 'foo').all())
smaller = self.frame[:2]
smaller['col10'] = ['1', '2']
self.assertEqual(smaller['col10'].dtype, np.object_)
self.assert_((smaller['col10'] == ['1', '2']).all())
def test_setitem_tuple(self):
self.frame['A', 'B'] = self.frame['A']
assert_series_equal(self.frame['A', 'B'], self.frame['A'])
def test_setitem_always_copy(self):
s = self.frame['A'].copy()
self.frame['E'] = s
self.frame['E'][5:10] = nan
self.assert_(notnull(s[5:10]).all())
def test_setitem_boolean(self):
df = self.frame.copy()
values = self.frame.values
df[df > 0] = 5
values[values > 0] = 5
assert_almost_equal(df.values, values)
df[df == 5] = 0
values[values == 5] = 0
assert_almost_equal(df.values, values)
self.assertRaises(Exception, df.__setitem__, df[:-1] > 0, 2)
self.assertRaises(Exception, df.__setitem__, df * 0, 2)
# index with DataFrame
mask = df > np.abs(df)
expected = df.copy()
df[df > np.abs(df)] = nan
expected.values[mask.values] = nan
assert_frame_equal(df, expected)
# set from DataFrame
expected = df.copy()
df[df > np.abs(df)] = df * 2
np.putmask(expected.values, mask.values, df.values * 2)
assert_frame_equal(df, expected)
def test_setitem_cast(self):
self.frame['D'] = self.frame['D'].astype('i8')
self.assert_(self.frame['D'].dtype == np.int64)
# #669, should not cast?
self.frame['B'] = 0
self.assert_(self.frame['B'].dtype == np.float64)
# cast if pass array of course
self.frame['B'] = np.arange(len(self.frame))
self.assert_(issubclass(self.frame['B'].dtype.type, np.integer))
self.frame['foo'] = 'bar'
self.frame['foo'] = 0
self.assert_(self.frame['foo'].dtype == np.int64)
self.frame['foo'] = 'bar'
self.frame['foo'] = 2.5
self.assert_(self.frame['foo'].dtype == np.float64)
self.frame['something'] = 0
self.assert_(self.frame['something'].dtype == np.int64)
self.frame['something'] = 2
self.assert_(self.frame['something'].dtype == np.int64)
self.frame['something'] = 2.5
self.assert_(self.frame['something'].dtype == np.float64)
def test_setitem_boolean_column(self):
expected = self.frame.copy()
mask = self.frame['A'] > 0
self.frame.ix[mask, 'B'] = 0
expected.values[mask, 1] = 0
assert_frame_equal(self.frame, expected)
def test_setitem_corner(self):
# corner case
df = DataFrame({'B' : [1., 2., 3.],
'C' : ['a', 'b', 'c']},
index=np.arange(3))
del df['B']
df['B'] = [1., 2., 3.]
self.assert_('B' in df)
self.assertEqual(len(df.columns), 2)
df['A'] = 'beginning'
df['E'] = 'foo'
df['D'] = 'bar'
df[datetime.now()] = 'date'
df[datetime.now()] = 5.
# what to do when empty frame with index
dm = DataFrame(index=self.frame.index)
dm['A'] = 'foo'
dm['B'] = 'bar'
self.assertEqual(len(dm.columns), 2)
self.assertEqual(dm.values.dtype, np.object_)
dm['C'] = 1
self.assertEqual(dm['C'].dtype, np.int64)
# set existing column
dm['A'] = 'bar'
self.assertEqual('bar', dm['A'][0])
dm = DataFrame(index=np.arange(3))
dm['A'] = 1
dm['foo'] = 'bar'
del dm['foo']
dm['foo'] = 'bar'
self.assertEqual(dm['foo'].dtype, np.object_)
dm['coercable'] = ['1', '2', '3']
self.assertEqual(dm['coercable'].dtype, np.object_)
def test_setitem_corner2(self):
data = {"title" : ['foobar','bar','foobar'] + ['foobar'] * 17 ,
"cruft" : np.random.random(20)}
df = DataFrame(data)
ix = df[df['title'] == 'bar'].index
df.ix[ix, ['title']] = 'foobar'
df.ix[ix, ['cruft']] = 0
assert( df.ix[1, 'title'] == 'foobar' )
assert( df.ix[1, 'cruft'] == 0 )
def test_setitem_ambig(self):
# difficulties with mixed-type data
from decimal import Decimal
# created as float type
dm = DataFrame(index=range(3), columns=range(3))
coercable_series = Series([Decimal(1) for _ in range(3)],
index=range(3))
uncoercable_series = Series(['foo', 'bzr', 'baz'], index=range(3))
dm[0] = np.ones(3)
self.assertEqual(len(dm.columns), 3)
# self.assert_(dm.objects is None)
dm[1] = coercable_series
self.assertEqual(len(dm.columns), 3)
# self.assert_(dm.objects is None)
dm[2] = uncoercable_series
self.assertEqual(len(dm.columns), 3)
# self.assert_(dm.objects is not None)
self.assert_(dm[2].dtype == np.object_)
def test_setitem_clear_caches(self):
# GH #304
df = DataFrame({'x': [1.1, 2.1, 3.1, 4.1], 'y': [5.1, 6.1, 7.1, 8.1]},
index=[0,1,2,3])
df.insert(2, 'z', np.nan)
# cache it
foo = df['z']
df.ix[2:, 'z'] = 42
expected = Series([np.nan, np.nan, 42, 42], index=df.index)
self.assert_(df['z'] is not foo)
assert_series_equal(df['z'], expected)
def test_setitem_None(self):
# GH #766
self.frame[None] = self.frame['A']
assert_series_equal(self.frame[None], self.frame['A'])
repr(self.frame)
def test_delitem_corner(self):
f = self.frame.copy()
del f['D']
self.assertEqual(len(f.columns), 3)
self.assertRaises(KeyError, f.__delitem__, 'D')
del f['B']
self.assertEqual(len(f.columns), 2)
def test_getitem_fancy_2d(self):
f = self.frame
ix = f.ix
assert_frame_equal(ix[:, ['B', 'A']], f.reindex(columns=['B', 'A']))
subidx = self.frame.index[[5, 4, 1]]
assert_frame_equal(ix[subidx, ['B', 'A']],
f.reindex(index=subidx, columns=['B', 'A']))
# slicing rows, etc.
assert_frame_equal(ix[5:10], f[5:10])
assert_frame_equal(ix[5:10, :], f[5:10])
assert_frame_equal(ix[:5, ['A', 'B']],
f.reindex(index=f.index[:5], columns=['A', 'B']))
# slice rows with labels, inclusive!
expected = ix[5:11]
result = ix[f.index[5]:f.index[10]]
assert_frame_equal(expected, result)
# slice columns
assert_frame_equal(ix[:, :2], f.reindex(columns=['A', 'B']))
# get view
exp = f.copy()
ix[5:10].values[:] = 5
exp.values[5:10] = 5
assert_frame_equal(f, exp)
def test_getitem_fancy_slice_integers_step(self):
df = DataFrame(np.random.randn(10, 5))
# this is OK
result = df.ix[:8:2]
df.ix[:8:2] = np.nan
self.assert_(isnull(df.ix[:8:2]).values.all())
def test_getitem_setitem_integer_slice_keyerrors(self):
df = DataFrame(np.random.randn(10, 5), index=range(0, 20, 2))
# this is OK
cp = df.copy()
cp.ix[4:10] = 0
self.assert_((cp.ix[4:10] == 0).values.all())
# so is this
cp = df.copy()
cp.ix[3:11] = 0
self.assert_((cp.ix[3:11] == 0).values.all())
result = df.ix[4:10]
result2 = df.ix[3:11]
expected = df.reindex([4, 6, 8, 10])
assert_frame_equal(result, expected)
assert_frame_equal(result2, expected)
# non-monotonic, raise KeyError
df2 = df[::-1]
self.assertRaises(KeyError, df2.ix.__getitem__, slice(3, 11))
self.assertRaises(KeyError, df2.ix.__setitem__, slice(3, 11), 0)
def test_setitem_fancy_2d(self):
f = self.frame
ix = f.ix
# case 1
frame = self.frame.copy()
expected = frame.copy()
frame.ix[:, ['B', 'A']] = 1
expected['B'] = 1.
expected['A'] = 1.
assert_frame_equal(frame, expected)
# case 2
frame = self.frame.copy()
frame2 = self.frame.copy()
expected = frame.copy()
subidx = self.frame.index[[5, 4, 1]]
values = randn(3, 2)
frame.ix[subidx, ['B', 'A']] = values
frame2.ix[[5, 4, 1], ['B', 'A']] = values
expected['B'].ix[subidx] = values[:, 0]
expected['A'].ix[subidx] = values[:, 1]
assert_frame_equal(frame, expected)
assert_frame_equal(frame2, expected)
# case 3: slicing rows, etc.
frame = self.frame.copy()
expected1 = self.frame.copy()
frame.ix[5:10] = 1.
expected1.values[5:10] = 1.
assert_frame_equal(frame, expected1)
expected2 = self.frame.copy()
arr = randn(5, len(frame.columns))
frame.ix[5:10] = arr
expected2.values[5:10] = arr
assert_frame_equal(frame, expected2)
# case 4
frame = self.frame.copy()
frame.ix[5:10, :] = 1.
assert_frame_equal(frame, expected1)
frame.ix[5:10, :] = arr
assert_frame_equal(frame, expected2)
# case 5
frame = self.frame.copy()
frame2 = self.frame.copy()
expected = self.frame.copy()
values = randn(5, 2)
frame.ix[:5, ['A', 'B']] = values
expected['A'][:5] = values[:, 0]
expected['B'][:5] = values[:, 1]
assert_frame_equal(frame, expected)
frame2.ix[:5, [0, 1]] = values
assert_frame_equal(frame2, expected)
# case 6: slice rows with labels, inclusive!
frame = self.frame.copy()
expected = self.frame.copy()
frame.ix[frame.index[5]:frame.index[10]] = 5.
expected.values[5:11] = 5
assert_frame_equal(frame, expected)
# case 7: slice columns
frame = self.frame.copy()
frame2 = self.frame.copy()
expected = self.frame.copy()
# slice indices
frame.ix[:, 1:3] = 4.
expected.values[:, 1:3] = 4.
assert_frame_equal(frame, expected)
# slice with labels
frame.ix[:, 'B':'C'] = 4.
assert_frame_equal(frame, expected)
def test_fancy_getitem_slice_mixed(self):
sliced = self.mixed_frame.ix[:, -3:]
self.assert_(sliced['D'].dtype == np.float64)
# get view with single block
sliced = self.frame.ix[:, -3:]
sliced['C'] = 4.
self.assert_((self.frame['C'] == 4).all())
def test_fancy_setitem_int_labels(self):
# integer index defers to label-based indexing
df = DataFrame(np.random.randn(10, 5), index=np.arange(0, 20, 2))
tmp = df.copy()
exp = df.copy()
tmp.ix[[0, 2, 4]] = 5
exp.values[:3] = 5
assert_frame_equal(tmp, exp)
tmp = df.copy()
exp = df.copy()
tmp.ix[6] = 5
exp.values[3] = 5
assert_frame_equal(tmp, exp)
tmp = df.copy()
exp = df.copy()
tmp.ix[:, 2] = 5
exp.values[:, 2] = 5
assert_frame_equal(tmp, exp)
def test_fancy_getitem_int_labels(self):
df = DataFrame(np.random.randn(10, 5), index=np.arange(0, 20, 2))
result = df.ix[[4, 2, 0], [2, 0]]
expected = df.reindex(index=[4, 2, 0], columns=[2, 0])
assert_frame_equal(result, expected)
result = df.ix[[4, 2, 0]]
expected = df.reindex(index=[4, 2, 0])
assert_frame_equal(result, expected)
result = df.ix[4]
expected = df.xs(4)
assert_series_equal(result, expected)
result = df.ix[:, 3]
expected = df[3]
assert_series_equal(result, expected)
def test_fancy_index_int_labels_exceptions(self):
df = DataFrame(np.random.randn(10, 5), index=np.arange(0, 20, 2))
# labels that aren't contained
self.assertRaises(KeyError, df.ix.__setitem__,
([0, 1, 2], [2, 3, 4]), 5)
# try to set indices not contained in frame
self.assertRaises(KeyError,
self.frame.ix.__setitem__,
['foo', 'bar', 'baz'], 1)
self.assertRaises(KeyError,
self.frame.ix.__setitem__,
(slice(None, None), ['E']), 1)
self.assertRaises(KeyError,
self.frame.ix.__setitem__,
(slice(None, None), 'E'), 1)
def test_setitem_fancy_mixed_2d(self):
self.mixed_frame.ix[:5, ['C', 'B', 'A']] = 5
result = self.mixed_frame.ix[:5, ['C', 'B', 'A']]
self.assert_((result.values == 5).all())
self.mixed_frame.ix[5] = np.nan
self.assert_(isnull(self.mixed_frame.ix[5]).all())
self.assertRaises(Exception, self.mixed_frame.ix.__setitem__,
5, self.mixed_frame.ix[6])
def test_getitem_fancy_1d(self):
f = self.frame
ix = f.ix
# return self if no slicing...for now
self.assert_(ix[:, :] is f)
# low dimensional slice
xs1 = ix[2, ['C', 'B', 'A']]
xs2 = f.xs(f.index[2]).reindex(['C', 'B', 'A'])
assert_series_equal(xs1, xs2)
ts1 = ix[5:10, 2]
ts2 = f[f.columns[2]][5:10]
assert_series_equal(ts1, ts2)
# positional xs
xs1 = ix[0]
xs2 = f.xs(f.index[0])
assert_series_equal(xs1, xs2)
xs1 = ix[f.index[5]]
xs2 = f.xs(f.index[5])
assert_series_equal(xs1, xs2)
# single column
assert_series_equal(ix[:, 'A'], f['A'])
# return view
exp = f.copy()
exp.values[5] = 4
ix[5][:] = 4
assert_frame_equal(exp, f)
exp.values[:, 1] = 6
ix[:, 1][:] = 6
assert_frame_equal(exp, f)
# slice of mixed-frame
xs = self.mixed_frame.ix[5]
exp = self.mixed_frame.xs(self.mixed_frame.index[5])
assert_series_equal(xs, exp)
def test_setitem_fancy_1d(self):
# case 1: set cross-section for indices
frame = self.frame.copy()
expected = self.frame.copy()
frame.ix[2, ['C', 'B', 'A']] = [1., 2., 3.]
expected['C'][2] = 1.
expected['B'][2] = 2.
expected['A'][2] = 3.
assert_frame_equal(frame, expected)
frame2 = self.frame.copy()
frame2.ix[2, [3, 2, 1]] = [1., 2., 3.]
assert_frame_equal(frame, expected)
# case 2, set a section of a column
frame = self.frame.copy()
expected = self.frame.copy()
vals = randn(5)
expected.values[5:10, 2] = vals
frame.ix[5:10, 2] = vals
assert_frame_equal(frame, expected)
frame2 = self.frame.copy()
frame2.ix[5:10, 'B'] = vals
assert_frame_equal(frame, expected)
# case 3: full xs
frame = self.frame.copy()
expected = self.frame.copy()
frame.ix[4] = 5.
expected.values[4] = 5.
assert_frame_equal(frame, expected)
frame.ix[frame.index[4]] = 6.
expected.values[4] = 6.
assert_frame_equal(frame, expected)
# single column
frame = self.frame.copy()
expected = self.frame.copy()
frame.ix[:, 'A'] = 7.
expected['A'] = 7.
assert_frame_equal(frame, expected)
def test_getitem_fancy_scalar(self):
f = self.frame
ix = f.ix
# individual value
for col in f.columns:
ts = f[col]
for idx in f.index[::5]:
assert_almost_equal(ix[idx, col], ts[idx])
def test_setitem_fancy_scalar(self):
f = self.frame
expected = self.frame.copy()
ix = f.ix
# individual value
for j, col in enumerate(f.columns):
ts = f[col]
for idx in f.index[::5]:
i = f.index.get_loc(idx)
val = randn()
expected.values[i,j] = val
ix[idx, col] = val
assert_frame_equal(f, expected)
def test_getitem_fancy_boolean(self):
f = self.frame
ix = f.ix
expected = f.reindex(columns=['B', 'D'])
result = ix[:, [False, True, False, True]]
assert_frame_equal(result, expected)
expected = f.reindex(index=f.index[5:10], columns=['B', 'D'])
result = ix[5:10, [False, True, False, True]]
assert_frame_equal(result, expected)
boolvec = f.index > f.index[7]
expected = f.reindex(index=f.index[boolvec])
result = ix[boolvec]
assert_frame_equal(result, expected)
result = ix[boolvec, :]
assert_frame_equal(result, expected)
result = ix[boolvec, 2:]
expected = f.reindex(index=f.index[boolvec],
columns=['C', 'D'])
assert_frame_equal(result, expected)
def test_setitem_fancy_boolean(self):
# from 2d, set with booleans
frame = self.frame.copy()
expected = self.frame.copy()
mask = frame['A'] > 0
frame.ix[mask] = 0.
expected.values[mask] = 0.
assert_frame_equal(frame, expected)
frame = self.frame.copy()
expected = self.frame.copy()
frame.ix[mask, ['A', 'B']] = 0.
expected.values[mask, :2] = 0.
assert_frame_equal(frame, expected)
def test_getitem_fancy_ints(self):
result = self.frame.ix[[1,4,7]]
expected = self.frame.ix[self.frame.index[[1,4,7]]]
assert_frame_equal(result, expected)
result = self.frame.ix[:, [2, 0, 1]]
expected = self.frame.ix[:, self.frame.columns[[2, 0, 1]]]
assert_frame_equal(result, expected)
def test_getitem_setitem_fancy_exceptions(self):
ix = self.frame.ix
self.assertRaises(Exception, ix.__getitem__,
(slice(None, None, None),
slice(None, None, None),
slice(None, None, None)))
self.assertRaises(Exception, ix.__setitem__,
(slice(None, None, None),
slice(None, None, None),
slice(None, None, None)), 1)
def test_getitem_setitem_boolean_misaligned(self):
# boolean index misaligned labels
mask = self.frame['A'][::-1] > 1
result = self.frame.ix[mask]
expected = self.frame.ix[mask[::-1]]
assert_frame_equal(result, expected)
cp = self.frame.copy()
expected = self.frame.copy()
cp.ix[mask] = 0
expected.ix[mask] = 0
assert_frame_equal(cp, expected)
def test_setitem_single_column_mixed(self):
df = DataFrame(randn(5, 3), index=['a', 'b', 'c', 'd', 'e'],
columns=['foo', 'bar', 'baz'])
df['str'] = 'qux'
df.ix[::2, 'str'] = nan
expected = [nan, 'qux', nan, 'qux', nan]
assert_almost_equal(df['str'].values, expected)
def test_setitem_fancy_exceptions(self):
pass
def test_getitem_boolean_missing(self):
pass
def test_setitem_boolean_missing(self):
pass
def test_get_value(self):
for idx in self.frame.index:
for col in self.frame.columns:
result = self.frame.get_value(idx, col)
expected = self.frame[col][idx]
assert_almost_equal(result, expected)
def test_lookup(self):
def alt(df, rows, cols):
result = []
for r, c in zip(rows, cols):
result.append(df.get_value(r, c))
return result
def testit(df):
rows = list(df.index) * len(df.columns)
cols = list(df.columns) * len(df.index)
result = df.lookup(rows, cols)
expected = alt(df, rows, cols)
assert_almost_equal(result, expected)
testit(self.mixed_frame)
testit(self.frame)
df = DataFrame({'label' : ['a', 'b', 'a', 'c'],
'mask_a' : [True, True, False, True],
'mask_b' : [True, False, False, False],
'mask_c' : [False, True, False, True]})
df['mask'] = df.lookup(df.index, 'mask_' + df['label'])
exp_mask = alt(df, df.index, 'mask_' + df['label'])
assert_almost_equal(df['mask'], exp_mask)
self.assert_(df['mask'].dtype == np.bool_)
def test_set_value(self):
for idx in self.frame.index:
for col in self.frame.columns:
self.frame.set_value(idx, col, 1)
assert_almost_equal(self.frame[col][idx], 1)
def test_set_value_resize(self):
res = self.frame.set_value('foobar', 'B', 0)
self.assert_(res is not self.frame)
self.assert_(res.index[-1] == 'foobar')
self.assertEqual(res.get_value('foobar', 'B'), 0)
res2 = res.set_value('foobar', 'qux', 0)
self.assert_(res2 is not res)
self.assert_(np.array_equal(res2.columns,
list(self.frame.columns) + ['qux']))
self.assertEqual(res2.get_value('foobar', 'qux'), 0)
res3 = res.set_value('foobar', 'baz', 'sam')
self.assert_(res3['baz'].dtype == np.object_)
res3 = res.set_value('foobar', 'baz', True)
self.assert_(res3['baz'].dtype == np.object_)
res3 = res.set_value('foobar', 'baz', 5)
self.assert_(com.is_float_dtype(res3['baz']))
self.assert_(isnull(res3['baz'].drop(['foobar'])).values.all())
self.assertRaises(ValueError, res3.set_value, 'foobar', 'baz', 'sam')
def test_get_set_value_no_partial_indexing(self):
# partial w/ MultiIndex raise exception
index = MultiIndex.from_tuples([(0, 1), (0, 2), (1, 1), (1, 2)])
df = DataFrame(index=index, columns=range(4))
self.assertRaises(KeyError, df.get_value, 0, 1)
# self.assertRaises(KeyError, df.set_value, 0, 1, 0)
def test_single_element_ix_dont_upcast(self):
self.frame['E'] = 1
self.assert_(issubclass(self.frame['E'].dtype.type,
(int, np.integer)))
result = self.frame.ix[self.frame.index[5], 'E']
self.assert_(com.is_integer(result))
def test_irow(self):
df = DataFrame(np.random.randn(10, 4), index=range(0, 20, 2))
result = df.irow(1)
exp = df.ix[2]
assert_series_equal(result, exp)
result = df.irow(2)
exp = df.ix[4]
assert_series_equal(result, exp)
# slice
result = df.irow(slice(4, 8))
expected = df.ix[8:14]
assert_frame_equal(result, expected)
# verify slice is view
result[2] = 0.
exp_col = df[2].copy()
exp_col[4:8] = 0.
assert_series_equal(df[2], exp_col)
# list of integers
result = df.irow([1, 2, 4, 6])
expected = df.reindex(df.index[[1, 2, 4, 6]])
assert_frame_equal(result, expected)
def test_icol(self):
df = DataFrame(np.random.randn(4, 10), columns=range(0, 20, 2))
result = df.icol(1)
exp = df.ix[:, 2]
assert_series_equal(result, exp)
result = df.icol(2)
exp = df.ix[:, 4]
assert_series_equal(result, exp)
# slice
result = df.icol(slice(4, 8))
expected = df.ix[:, 8:14]
assert_frame_equal(result, expected)
# verify slice is view
result[8] = 0.
self.assert_((df[8] == 0).all())
# list of integers
result = df.icol([1, 2, 4, 6])
expected = df.reindex(columns=df.columns[[1, 2, 4, 6]])
assert_frame_equal(result, expected)
def test_iget_value(self):
for i, row in enumerate(self.frame.index):
for j, col in enumerate(self.frame.columns):
result = self.frame.iget_value(i, j)
expected = self.frame.get_value(row, col)
assert_almost_equal(result, expected)
_seriesd = tm.getSeriesData()
_tsd = tm.getTimeSeriesData()
_frame = DataFrame(_seriesd)
_frame2 = DataFrame(_seriesd, columns=['D', 'C', 'B', 'A'])
_intframe = DataFrame(dict((k, v.astype(int))
for k, v in _seriesd.iteritems()))
_tsframe = DataFrame(_tsd)
_mixed_frame = _frame.copy()
_mixed_frame['foo'] = 'bar'
class SafeForSparse(object):
def test_getitem_pop_assign_name(self):
s = self.frame['A']
self.assertEqual(s.name, 'A')
s = self.frame.pop('A')
self.assertEqual(s.name, 'A')
s = self.frame.ix[:, 'B']
self.assertEqual(s.name, 'B')
s2 = s.ix[:]
self.assertEqual(s2.name, 'B')
def test_get_value(self):
for idx in self.frame.index:
for col in self.frame.columns:
result = self.frame.get_value(idx, col)
expected = self.frame[col][idx]
assert_almost_equal(result, expected)
def test_join_index(self):
# left / right
f = self.frame.reindex(columns=['A', 'B'])[:10]
f2 = self.frame.reindex(columns=['C', 'D'])
joined = f.join(f2)
self.assert_(f.index.equals(joined.index))
self.assertEqual(len(joined.columns), 4)
joined = f.join(f2, how='left')
self.assert_(joined.index.equals(f.index))
self.assertEqual(len(joined.columns), 4)
joined = f.join(f2, how='right')
self.assert_(joined.index.equals(f2.index))
self.assertEqual(len(joined.columns), 4)
# corner case
self.assertRaises(Exception, self.frame.join, self.frame,
how='left')
# inner
f = self.frame.reindex(columns=['A', 'B'])[:10]
f2 = self.frame.reindex(columns=['C', 'D'])
joined = f.join(f2, how='inner')
self.assert_(joined.index.equals(f.index.intersection(f2.index)))
self.assertEqual(len(joined.columns), 4)
# corner case
self.assertRaises(Exception, self.frame.join, self.frame,
how='inner')
# outer
f = self.frame.reindex(columns=['A', 'B'])[:10]
f2 = self.frame.reindex(columns=['C', 'D'])
joined = f.join(f2, how='outer')
self.assert_(tm.equalContents(self.frame.index, joined.index))
self.assertEqual(len(joined.columns), 4)
# corner case
self.assertRaises(Exception, self.frame.join, self.frame,
how='outer')
self.assertRaises(Exception, f.join, f2, how='foo')
def test_join_index_more(self):
af = self.frame.ix[:, ['A', 'B']]
bf = self.frame.ix[::2, ['C', 'D']]
expected = af.copy()
expected['C'] = self.frame['C'][::2]
expected['D'] = self.frame['D'][::2]
result = af.join(bf)
assert_frame_equal(result, expected)
result = af.join(bf, how='right')
assert_frame_equal(result, expected[::2])
result = bf.join(af, how='right')
assert_frame_equal(result, expected.ix[:, result.columns])
def test_join_index_series(self):
df = self.frame.copy()
s = df.pop(self.frame.columns[-1])
joined = df.join(s)
assert_frame_equal(joined, self.frame)
s.name = None
self.assertRaises(Exception, df.join, s)
def test_join_overlap(self):
df1 = self.frame.ix[:, ['A', 'B', 'C']]
df2 = self.frame.ix[:, ['B', 'C', 'D']]
joined = df1.join(df2, lsuffix='_df1', rsuffix='_df2')
df1_suf = df1.ix[:, ['B', 'C']].add_suffix('_df1')
df2_suf = df2.ix[:, ['B', 'C']].add_suffix('_df2')
no_overlap = self.frame.ix[:, ['A', 'D']]
expected = df1_suf.join(df2_suf).join(no_overlap)
# column order not necessarily sorted
assert_frame_equal(joined, expected.ix[:, joined.columns])
def test_add_prefix_suffix(self):
with_prefix = self.frame.add_prefix('foo#')
expected = ['foo#%s' % c for c in self.frame.columns]
self.assert_(np.array_equal(with_prefix.columns, expected))
with_suffix = self.frame.add_suffix('#foo')
expected = ['%s#foo' % c for c in self.frame.columns]
self.assert_(np.array_equal(with_suffix.columns, expected))
class TestDataFrame(unittest.TestCase, CheckIndexing,
SafeForSparse):
klass = DataFrame
def setUp(self):
self.frame = _frame.copy()
self.frame2 = _frame2.copy()
self.intframe = _intframe.copy()
self.tsframe = _tsframe.copy()
self.mixed_frame = _mixed_frame.copy()
self.ts1 = tm.makeTimeSeries()
self.ts2 = tm.makeTimeSeries()[5:]
self.ts3 = tm.makeTimeSeries()[-5:]
self.ts4 = tm.makeTimeSeries()[1:-1]
self.ts_dict = {
'col1' : self.ts1,
'col2' : self.ts2,
'col3' : self.ts3,
'col4' : self.ts4,
}
self.empty = DataFrame({})
arr = np.array([[1., 2., 3.],
[4., 5., 6.],
[7., 8., 9.]])
self.simple = DataFrame(arr, columns=['one', 'two', 'three'],
index=['a', 'b', 'c'])
def test_get_axis(self):
self.assert_(DataFrame._get_axis_name(0) == 'index')
self.assert_(DataFrame._get_axis_name(1) == 'columns')
self.assert_(DataFrame._get_axis_name('index') == 'index')
self.assert_(DataFrame._get_axis_name('columns') == 'columns')
self.assertRaises(Exception, DataFrame._get_axis_name, 'foo')
self.assertRaises(Exception, DataFrame._get_axis_name, None)
self.assert_(DataFrame._get_axis_number(0) == 0)
self.assert_(DataFrame._get_axis_number(1) == 1)
self.assert_(DataFrame._get_axis_number('index') == 0)
self.assert_(DataFrame._get_axis_number('columns') == 1)
self.assertRaises(Exception, DataFrame._get_axis_number, 2)
self.assertRaises(Exception, DataFrame._get_axis_number, None)
self.assert_(self.frame._get_axis(0) is self.frame.index)
self.assert_(self.frame._get_axis(1) is self.frame.columns)
def test_set_index(self):
idx = Index(np.arange(len(self.mixed_frame)))
# cache it
_ = self.mixed_frame['foo']
self.mixed_frame.index = idx
self.assert_(self.mixed_frame['foo'].index is idx)
self.assertRaises(Exception, setattr, self.mixed_frame, 'index',
idx[::2])
def test_set_columns(self):
cols = Index(np.arange(len(self.mixed_frame.columns)))
self.mixed_frame.columns = cols
self.assertRaises(Exception, setattr, self.mixed_frame, 'columns',
cols[::2])
def test_constructor(self):
df = DataFrame()
self.assert_(len(df.index) == 0)
df = DataFrame(data={})
self.assert_(len(df.index) == 0)
def test_constructor_mixed(self):
index, data = tm.getMixedTypeDict()
indexed_frame = DataFrame(data, index=index)
unindexed_frame = DataFrame(data)
self.assertEqual(self.mixed_frame['foo'].dtype, np.object_)
def test_constructor_rec(self):
rec = self.frame.to_records(index=False)
# Assigning causes segfault in NumPy < 1.5.1
# rec.dtype.names = list(rec.dtype.names)[::-1]
index = self.frame.index
df = DataFrame(rec)
self.assert_(np.array_equal(df.columns, rec.dtype.names))
df2 = DataFrame(rec, index=index)
self.assert_(np.array_equal(df2.columns, rec.dtype.names))
self.assert_(df2.index.equals(index))
rng = np.arange(len(rec))[::-1]
df3 = DataFrame(rec, index=rng, columns=['C', 'B'])
expected = DataFrame(rec, index=rng).reindex(columns=['C', 'B'])
assert_frame_equal(df3, expected)
def test_constructor_bool(self):
df = DataFrame({0 : np.ones(10, dtype=bool),
1 : np.zeros(10, dtype=bool)})
self.assertEqual(df.values.dtype, np.bool_)
def test_is_mixed_type(self):
self.assert_(not self.frame._is_mixed_type)
self.assert_(self.mixed_frame._is_mixed_type)
def test_constructor_dict(self):
frame = DataFrame({'col1' : self.ts1,
'col2' : self.ts2})
tm.assert_dict_equal(self.ts1, frame['col1'], compare_keys=False)
tm.assert_dict_equal(self.ts2, frame['col2'], compare_keys=False)
frame = DataFrame({'col1' : self.ts1,
'col2' : self.ts2},
columns=['col2', 'col3', 'col4'])
self.assertEqual(len(frame), len(self.ts2))
self.assert_('col1' not in frame)
self.assert_(np.isnan(frame['col3']).all())
# Corner cases
self.assertEqual(len(DataFrame({})), 0)
self.assertRaises(Exception, lambda x: DataFrame([self.ts1, self.ts2]))
# mix dict and array, wrong size
self.assertRaises(Exception, DataFrame,
{'A' : {'a' : 'a', 'b' : 'b'},
'B' : ['a', 'b', 'c']})
# Length-one dict micro-optimization
frame = DataFrame({'A' : {'1' : 1, '2' : 2}})
self.assert_(np.array_equal(frame.index, ['1', '2']))
# empty dict plus index
idx = Index([0, 1, 2])
frame = DataFrame({}, index=idx)
self.assert_(frame.index is idx)
# empty with index and columns
idx = Index([0, 1, 2])
frame = DataFrame({}, index=idx, columns=idx)
self.assert_(frame.index is idx)
self.assert_(frame.columns is idx)
self.assertEqual(len(frame._series), 3)
# with dict of empty list and Series
frame = DataFrame({'A' : [], 'B' : []}, columns=['A', 'B'])
self.assert_(frame.index is NULL_INDEX)
def test_constructor_subclass_dict(self):
# Test for passing dict subclass to constructor
data = {'col1': tm.TestSubDict((x, 10.0 * x) for x in xrange(10)),
'col2': tm.TestSubDict((x, 20.0 * x) for x in xrange(10))}
df = DataFrame(data)
refdf = DataFrame(dict((col, dict(val.iteritems())) for col, val in data.iteritems()))
assert_frame_equal(refdf, df)
data = tm.TestSubDict(data.iteritems())
df = DataFrame(data)
assert_frame_equal(refdf, df)
# try with defaultdict
from collections import defaultdict
data = {}
self.frame['B'][:10] = np.nan
for k, v in self.frame.iterkv():
dct = defaultdict(dict)
dct.update(v.to_dict())
data[k] = dct
frame = DataFrame(data)
assert_frame_equal(self.frame.sort_index(), frame)
def test_constructor_dict_block(self):
expected = [[4., 3., 2., 1.]]
df = DataFrame({'d' : [4.],'c' : [3.],'b' : [2.],'a' : [1.]},
columns=['d', 'c', 'b', 'a'])
assert_almost_equal(df.values, expected)
def test_constructor_dict_cast(self):
# cast float tests
test_data = {
'A' : {'1' : 1, '2' : 2},
'B' : {'1' : '1', '2' : '2', '3' : '3'},
}
frame = DataFrame(test_data, dtype=float)
self.assertEqual(len(frame), 3)
self.assert_(frame['B'].dtype == np.float64)
self.assert_(frame['A'].dtype == np.float64)
frame = DataFrame(test_data)
self.assertEqual(len(frame), 3)
self.assert_(frame['B'].dtype == np.object_)
self.assert_(frame['A'].dtype == np.float64)
# can't cast to float
test_data = {
'A' : dict(zip(range(20), tm.makeDateIndex(20))),
'B' : dict(zip(range(15), randn(15)))
}
frame = DataFrame(test_data, dtype=float)
self.assertEqual(len(frame), 20)
self.assert_(frame['A'].dtype == np.object_)
self.assert_(frame['B'].dtype == np.float64)
def test_constructor_dict_dont_upcast(self):
d = {'Col1': {'Row1': 'A String', 'Row2': np.nan}}
df = DataFrame(d)
self.assert_(isinstance(df['Col1']['Row2'], float))
dm = DataFrame([[1,2],['a','b']], index=[1,2], columns=[1,2])
self.assert_(isinstance(dm[1][1], int))
def test_constructor_ndarray(self):
mat = np.zeros((2, 3), dtype=float)
# 2-D input
frame = DataFrame(mat, columns=['A', 'B', 'C'], index=[1, 2])
self.assertEqual(len(frame.index), 2)
self.assertEqual(len(frame.columns), 3)
# cast type
frame = DataFrame(mat, columns=['A', 'B', 'C'],
index=[1, 2], dtype=int)
self.assert_(frame.values.dtype == np.int64)
# 1-D input
frame = DataFrame(np.zeros(3), columns=['A'], index=[1, 2, 3])
self.assertEqual(len(frame.index), 3)
self.assertEqual(len(frame.columns), 1)
frame = DataFrame(['foo', 'bar'], index=[0, 1], columns=['A'])
self.assertEqual(len(frame), 2)
# higher dim raise exception
self.assertRaises(Exception, DataFrame, np.zeros((3, 3, 3)),
columns=['A', 'B', 'C'], index=[1])
# wrong size axis labels
self.assertRaises(Exception, DataFrame, mat,
columns=['A', 'B', 'C'], index=[1])
self.assertRaises(Exception, DataFrame, mat,
columns=['A', 'B'], index=[1, 2])
# automatic labeling
frame = DataFrame(mat)
self.assert_(np.array_equal(frame.index, range(2)))
self.assert_(np.array_equal(frame.columns, range(3)))
frame = DataFrame(mat, index=[1, 2])
self.assert_(np.array_equal(frame.columns, range(3)))
frame = DataFrame(mat, columns=['A', 'B', 'C'])
self.assert_(np.array_equal(frame.index, range(2)))
# 0-length axis
frame = DataFrame(np.empty((0, 3)))
self.assert_(frame.index is NULL_INDEX)
frame = DataFrame(np.empty((3, 0)))
self.assert_(len(frame.columns) == 0)
def test_constructor_maskedarray(self):
mat = ma.masked_all((2, 3), dtype=float)
# 2-D input
frame = DataFrame(mat, columns=['A', 'B', 'C'], index=[1, 2])
self.assertEqual(len(frame.index), 2)
self.assertEqual(len(frame.columns), 3)
self.assertTrue(np.all(~np.asarray(frame == frame)))
# cast type
frame = DataFrame(mat, columns=['A', 'B', 'C'],
index=[1, 2], dtype=int)
self.assert_(frame.values.dtype == np.int64)
# Check non-masked values
mat2 = ma.copy(mat)
mat2[0,0] = 1.0
mat2[1,2] = 2.0
frame = DataFrame(mat2, columns=['A', 'B', 'C'], index=[1, 2])
self.assertEqual(1.0, frame['A'][1])
self.assertEqual(2.0, frame['C'][2])
# 1-D input
frame = DataFrame(ma.masked_all((3,)), columns=['A'], index=[1, 2, 3])
self.assertEqual(len(frame.index), 3)
self.assertEqual(len(frame.columns), 1)
self.assertTrue(np.all(~np.asarray(frame == frame)))
# higher dim raise exception
self.assertRaises(Exception, DataFrame, ma.masked_all((3, 3, 3)),
columns=['A', 'B', 'C'], index=[1])
# wrong size axis labels
self.assertRaises(Exception, DataFrame, mat,
columns=['A', 'B', 'C'], index=[1])
self.assertRaises(Exception, DataFrame, mat,
columns=['A', 'B'], index=[1, 2])
# automatic labeling
frame = DataFrame(mat)
self.assert_(np.array_equal(frame.index, range(2)))
self.assert_(np.array_equal(frame.columns, range(3)))
frame = DataFrame(mat, index=[1, 2])
self.assert_(np.array_equal(frame.columns, range(3)))
frame = DataFrame(mat, columns=['A', 'B', 'C'])
self.assert_(np.array_equal(frame.index, range(2)))
# 0-length axis
frame = DataFrame(ma.masked_all((0, 3)))
self.assert_(frame.index is NULL_INDEX)
frame = DataFrame(ma.masked_all((3, 0)))
self.assert_(len(frame.columns) == 0)
def test_constructor_corner(self):
df = DataFrame(index=[])
self.assertEqual(df.values.shape, (0, 0))
# empty but with specified dtype
df = DataFrame(index=range(10), columns=['a','b'], dtype=object)
self.assert_(df.values.dtype == np.object_)
# does not error but ends up float
df = DataFrame(index=range(10), columns=['a','b'], dtype=int)
self.assert_(df.values.dtype == np.float64)
def test_constructor_scalar_inference(self):
data = {'int' : 1, 'bool' : True,
'float' : 3., 'object' : 'foo'}
df = DataFrame(data, index=np.arange(10))
self.assert_(df['int'].dtype == np.int64)
self.assert_(df['bool'].dtype == np.bool_)
self.assert_(df['float'].dtype == np.float64)
self.assert_(df['object'].dtype == np.object_)
def test_constructor_DataFrame(self):
df = DataFrame(self.frame)
assert_frame_equal(df, self.frame)
df_casted = DataFrame(self.frame, dtype=int)
self.assert_(df_casted.values.dtype == np.int64)
def test_constructor_more(self):
# used to be in test_matrix.py
arr = randn(10)
dm = DataFrame(arr, columns=['A'], index=np.arange(10))
self.assertEqual(dm.values.ndim, 2)
arr = randn(0)
dm = DataFrame(arr)
self.assertEqual(dm.values.ndim, 2)
self.assertEqual(dm.values.ndim, 2)
# no data specified
dm = DataFrame(columns=['A', 'B'], index=np.arange(10))
self.assertEqual(dm.values.shape, (10, 2))
dm = DataFrame(columns=['A', 'B'])
self.assertEqual(dm.values.shape, (0, 2))
dm = DataFrame(index=np.arange(10))
self.assertEqual(dm.values.shape, (10, 0))
# corner, silly
self.assertRaises(Exception, DataFrame, (1, 2, 3))
# can't cast
mat = np.array(['foo', 'bar'], dtype=object).reshape(2, 1)
self.assertRaises(ValueError, DataFrame, mat, index=[0, 1],
columns=[0], dtype=float)
dm = DataFrame(DataFrame(self.frame._series))
tm.assert_frame_equal(dm, self.frame)
# int cast
dm = DataFrame({'A' : np.ones(10, dtype=int),
'B' : np.ones(10, dtype=float)},
index=np.arange(10))
self.assertEqual(len(dm.columns), 2)
self.assert_(dm.values.dtype == np.float64)
def test_constructor_empty_list(self):
df = DataFrame([], index=[])
expected = DataFrame(index=[])
assert_frame_equal(df, expected)
def test_constructor_list_of_lists(self):
# GH #484
l = [[1, 'a'], [2, 'b']]
df = DataFrame(data=l, columns=["num", "str"])
self.assert_(com.is_integer_dtype(df['num']))
self.assert_(df['str'].dtype == np.object_)
def test_constructor_list_of_dicts(self):
data = [{'a': 1.5, 'b': 3, 'c':4, 'd':6},
{'a': 1.5, 'b': 3, 'd':6},
{'a': 1.5, 'd':6},
{},
{'a': 1.5, 'b': 3, 'c':4},
{'b': 3, 'c':4, 'd':6}]
result = DataFrame(data)
expected = DataFrame.from_dict(dict(zip(range(len(data)), data)),
orient='index')
assert_frame_equal(result, expected.reindex(result.index))
result = DataFrame([{}])
expected = DataFrame([])
assert_frame_equal(result, expected)
def test_constructor_ragged(self):
data = {'A' : randn(10),
'B' : randn(8)}
self.assertRaises(Exception, DataFrame, data)
def test_constructor_scalar(self):
idx = Index(range(3))
df = DataFrame({"a" : 0}, index=idx)
expected = DataFrame({"a" : [0, 0, 0]}, index=idx)
assert_frame_equal(df, expected)
def test_constructor_Series_copy_bug(self):
df = DataFrame(self.frame['A'], index=self.frame.index, columns=['A'])
df.copy()
def test_constructor_mixed_dict_and_Series(self):
data = {}
data['A'] = {'foo' : 1, 'bar' : 2, 'baz' : 3}
data['B'] = Series([4, 3, 2, 1], index=['bar', 'qux', 'baz', 'foo'])
result = DataFrame(data)
self.assert_(result.index.is_monotonic)
# ordering ambiguous, raise exception
self.assertRaises(Exception, DataFrame,
{'A' : ['a', 'b'], 'B' : {'a' : 'a', 'b' : 'b'}})
# this is OK though
result = DataFrame({'A' : ['a', 'b'],
'B' : Series(['a', 'b'], index=['a', 'b'])})
expected = DataFrame({'A' : ['a', 'b'], 'B' : ['a', 'b']},
index=['a', 'b'])
assert_frame_equal(result, expected)
def test_constructor_tuples(self):
result = DataFrame({'A': [(1, 2), (3, 4)]})
expected = DataFrame({'A': Series([(1, 2), (3, 4)])})
assert_frame_equal(result, expected)
def test_constructor_orient(self):
data_dict = self.mixed_frame.T._series
recons = DataFrame.from_dict(data_dict, orient='index')
expected = self.mixed_frame.sort_index()
assert_frame_equal(recons, expected)
def test_constructor_Series_named(self):
a = Series([1,2,3], index=['a','b','c'], name='x')
df = DataFrame(a)
self.assert_(df.columns[0] == 'x')
self.assert_(df.index.equals(a.index))
def test_constructor_Series_differently_indexed(self):
# name
s1 = Series([1, 2, 3], index=['a','b','c'], name='x')
# no name
s2 = Series([1, 2, 3], index=['a','b','c'])
other_index = Index(['a', 'b'])
df1 = DataFrame(s1, index=other_index)
exp1 = DataFrame(s1.reindex(other_index))
self.assert_(df1.columns[0] == 'x')
assert_frame_equal(df1, exp1)
df2 = DataFrame(s2, index=other_index)
exp2 = DataFrame(s2.reindex(other_index))
self.assert_(df2.columns[0] == 0)
self.assert_(df2.index.equals(other_index))
assert_frame_equal(df2, exp2)
def test_constructor_manager_resize(self):
index = list(self.frame.index[:5])
columns = list(self.frame.columns[:3])
result = DataFrame(self.frame._data, index=index,
columns=columns)
self.assert_(np.array_equal(result.index, index))
self.assert_(np.array_equal(result.columns, columns))
def test_constructor_from_items(self):
items = [(c, self.frame[c]) for c in self.frame.columns]
recons = DataFrame.from_items(items)
assert_frame_equal(recons, self.frame)
# pass some columns
recons = DataFrame.from_items(items, columns=['C', 'B', 'A'])
assert_frame_equal(recons, self.frame.ix[:, ['C', 'B', 'A']])
# orient='index'
row_items = [(idx, self.mixed_frame.xs(idx))
for idx in self.mixed_frame.index]
recons = DataFrame.from_items(row_items,
columns=self.mixed_frame.columns,
orient='index')
assert_frame_equal(recons, self.mixed_frame)
self.assert_(recons['A'].dtype == np.float64)
self.assertRaises(ValueError, DataFrame.from_items, row_items,
orient='index')
# orient='index', but thar be tuples
arr = lib.list_to_object_array([('bar', 'baz')] * len(self.mixed_frame))
self.mixed_frame['foo'] = arr
row_items = [(idx, list(self.mixed_frame.xs(idx)))
for idx in self.mixed_frame.index]
recons = DataFrame.from_items(row_items,
columns=self.mixed_frame.columns,
orient='index')
assert_frame_equal(recons, self.mixed_frame)
self.assert_(isinstance(recons['foo'][0], tuple))
def test_constructor_mix_series_nonseries(self):
df = DataFrame({'A' : self.frame['A'],
'B' : list(self.frame['B'])}, columns=['A', 'B'])
assert_frame_equal(df, self.frame.ix[:, ['A', 'B']])
self.assertRaises(Exception, DataFrame,
{'A' : self.frame['A'],
'B' : list(self.frame['B'])[:-2]})
def test_astype(self):
casted = self.frame.astype(int)
expected = DataFrame(self.frame.values.astype(int),
index=self.frame.index,
columns=self.frame.columns)
assert_frame_equal(casted, expected)
self.frame['foo'] = '5'
casted = self.frame.astype(int)
expected = DataFrame(self.frame.values.astype(int),
index=self.frame.index,
columns=self.frame.columns)
assert_frame_equal(casted, expected)
def test_array_interface(self):
result = np.sqrt(self.frame)
self.assert_(type(result) is type(self.frame))
self.assert_(result.index is self.frame.index)
self.assert_(result.columns is self.frame.columns)
assert_frame_equal(result, self.frame.apply(np.sqrt))
def test_pickle(self):
unpickled = pickle.loads(pickle.dumps(self.mixed_frame))
assert_frame_equal(self.mixed_frame, unpickled)
# buglet
self.mixed_frame._data.ndim
# empty
unpickled = pickle.loads(pickle.dumps(self.empty))
repr(unpickled)
def test_to_dict(self):
test_data = {
'A' : {'1' : 1, '2' : 2},
'B' : {'1' : '1', '2' : '2', '3' : '3'},
}
recons_data = DataFrame(test_data).to_dict()
for k, v in test_data.iteritems():
for k2, v2 in v.iteritems():
self.assertEqual(v2, recons_data[k][k2])
def test_from_records_to_records(self):
# from numpy documentation
arr = np.zeros((2,),dtype=('i4,f4,a10'))
arr[:] = [(1,2.,'Hello'),(2,3.,"World")]
frame = DataFrame.from_records(arr)
index = np.arange(len(arr))[::-1]
indexed_frame = DataFrame.from_records(arr, index=index)
self.assert_(np.array_equal(indexed_frame.index, index))
# wrong length
self.assertRaises(Exception, DataFrame.from_records, arr,
index=index[:-1])
indexed_frame = DataFrame.from_records(arr, index='f1')
self.assertRaises(Exception, DataFrame.from_records, np.zeros((2, 3)))
# what to do?
records = indexed_frame.to_records()
self.assertEqual(len(records.dtype.names), 3)
records = indexed_frame.to_records(index=False)
self.assertEqual(len(records.dtype.names), 2)
self.assert_('index' not in records.dtype.names)
def test_from_records_sequencelike(self):
df = DataFrame({'A' : np.random.randn(6),
'B' : np.arange(6),
'C' : ['foo'] * 6,
'D' : np.array([True, False] * 3, dtype=bool)})
tuples = [tuple(x) for x in df.values]
lists = [list(x) for x in tuples]
asdict = dict((x,y) for x, y in df.iteritems())
result = DataFrame.from_records(tuples, columns=df.columns)
result2 = DataFrame.from_records(lists, columns=df.columns)
result3 = DataFrame.from_records(asdict, columns=df.columns)
assert_frame_equal(result, df)
assert_frame_equal(result2, df)
assert_frame_equal(result3, df)
result = DataFrame.from_records(tuples)
self.assert_(np.array_equal(result.columns, range(4)))
# test exclude parameter
result = DataFrame.from_records(tuples, exclude=[0,1,3])
result.columns = ['C']
assert_frame_equal(result, df[['C']])
# empty case
result = DataFrame.from_records([], columns=['foo', 'bar', 'baz'])
self.assertEqual(len(result), 0)
self.assert_(np.array_equal(result.columns, ['foo', 'bar', 'baz']))
result = DataFrame.from_records([])
self.assertEqual(len(result), 0)
self.assertEqual(len(result.columns), 0)
def test_from_records_with_index_data(self):
df = DataFrame(np.random.randn(10,3), columns=['A', 'B', 'C'])
data = np.random.randn(10)
df1 = DataFrame.from_records(df, index=data)
assert(df1.index.equals(Index(data)))
def test_from_records_bad_index_column(self):
df = DataFrame(np.random.randn(10,3), columns=['A', 'B', 'C'])
# should pass
df1 = DataFrame.from_records(df, index=['C'])
assert(df1.index.equals(Index(df.C)))
df1 = DataFrame.from_records(df, index='C')
assert(df1.index.equals(Index(df.C)))
# should fail
self.assertRaises(Exception, DataFrame.from_records, df, index=[2])
self.assertRaises(KeyError, DataFrame.from_records, df, index=2)
def test_get_agg_axis(self):
cols = self.frame._get_agg_axis(0)
self.assert_(cols is self.frame.columns)
idx = self.frame._get_agg_axis(1)
self.assert_(idx is self.frame.index)
self.assertRaises(Exception, self.frame._get_agg_axis, 2)
def test_nonzero(self):
self.assertFalse(self.empty)
self.assert_(self.frame)
self.assert_(self.mixed_frame)
# corner case
df = DataFrame({'A' : [1., 2., 3.],
'B' : ['a', 'b', 'c']},
index=np.arange(3))
del df['A']
self.assert_(df)
def test_repr(self):
buf = StringIO()
# empty
foo = repr(self.empty)
# empty with index
frame = DataFrame(index=np.arange(1000))
foo = repr(frame)
# small one
foo = repr(self.frame)
self.frame.info(verbose=False, buf=buf)
# even smaller
self.frame.reindex(columns=['A']).info(verbose=False, buf=buf)
self.frame.reindex(columns=['A', 'B']).info(verbose=False, buf=buf)
# big one
biggie = DataFrame(np.zeros((200, 4)), columns=range(4),
index=range(200))
foo = repr(biggie)
# mixed
foo = repr(self.mixed_frame)
self.mixed_frame.info(verbose=False, buf=buf)
# big mixed
biggie = DataFrame({'A' : randn(200),
'B' : tm.makeStringIndex(200)},
index=range(200))
biggie['A'][:20] = nan
biggie['B'][:20] = nan
foo = repr(biggie)
# exhausting cases in DataFrame.info
# columns but no index
no_index = DataFrame(columns=[0, 1, 3])
foo = repr(no_index)
# no columns or index
self.empty.info(buf=buf)
# columns are not sortable
unsortable = DataFrame({'foo' : [1] * 50,
datetime.today() : [1] * 50,
'bar' : ['bar'] * 50,
datetime.today() + timedelta(1) : ['bar'] * 50},
index=np.arange(50))
foo = repr(unsortable)
fmt.set_printoptions(precision=3, column_space=10)
repr(self.frame)
fmt.set_printoptions(max_rows=10, max_columns=2)
repr(self.frame)
fmt.reset_printoptions()
def test_head_tail(self):
assert_frame_equal(self.frame.head(), self.frame[:5])
assert_frame_equal(self.frame.tail(), self.frame[-5:])
def test_insert(self):
df = DataFrame(np.random.randn(5, 3), index=np.arange(5),
columns=['c', 'b', 'a'])
df.insert(0, 'foo', df['a'])
self.assert_(np.array_equal(df.columns, ['foo', 'c', 'b', 'a']))
assert_almost_equal(df['a'], df['foo'])
df.insert(2, 'bar', df['c'])
self.assert_(np.array_equal(df.columns, ['foo', 'c', 'bar', 'b', 'a']))
assert_almost_equal(df['c'], df['bar'])
self.assertRaises(Exception, df.insert, 1, 'a', df['b'])
self.assertRaises(Exception, df.insert, 1, 'c', df['b'])
df.columns.name = 'some_name'
# preserve columns name field
df.insert(0, 'baz', df['c'])
self.assertEqual(df.columns.name, 'some_name')
def test_delitem(self):
del self.frame['A']
self.assert_('A' not in self.frame)
def test_pop(self):
A = self.frame.pop('A')
self.assert_('A' not in self.frame)
self.frame['foo'] = 'bar'
foo = self.frame.pop('foo')
self.assert_('foo' not in self.frame)
def test_iter(self):
self.assert_(tm.equalContents(list(self.frame), self.frame.columns))
def test_iterrows(self):
for i, (k, v) in enumerate(self.frame.iterrows()):
exp = self.frame.xs(self.frame.index[i])
assert_series_equal(v, exp)
for i, (k, v) in enumerate(self.mixed_frame.iterrows()):
exp = self.mixed_frame.xs(self.mixed_frame.index[i])
assert_series_equal(v, exp)
def test_len(self):
self.assertEqual(len(self.frame), len(self.frame.index))
def test_operators(self):
garbage = random.random(4)
colSeries = Series(garbage, index=np.array(self.frame.columns))
idSum = self.frame + self.frame
seriesSum = self.frame + colSeries
for col, series in idSum.iteritems():
for idx, val in series.iteritems():
origVal = self.frame[col][idx] * 2
if not np.isnan(val):
self.assertEqual(val, origVal)
else:
self.assert_(np.isnan(origVal))
for col, series in seriesSum.iteritems():
for idx, val in series.iteritems():
origVal = self.frame[col][idx] + colSeries[col]
if not np.isnan(val):
self.assertEqual(val, origVal)
else:
self.assert_(np.isnan(origVal))
added = self.frame2 + self.frame2
expected = self.frame2 * 2
assert_frame_equal(added, expected)
def test_logical_operators(self):
import operator
def _check_bin_op(op):
result = op(df1, df2)
expected = DataFrame(op(df1.values, df2.values), index=df1.index,
columns=df1.columns)
self.assert_(result.values.dtype == np.bool_)
assert_frame_equal(result, expected)
def _check_unary_op(op):
result = op(df1)
expected = DataFrame(op(df1.values), index=df1.index,
columns=df1.columns)
self.assert_(result.values.dtype == np.bool_)
assert_frame_equal(result, expected)
df1 = {'a': {'a': True, 'b': False, 'c': False, 'd': True, 'e': True},
'b': {'a': False, 'b': True, 'c': False, 'd': False, 'e': False},
'c': {'a': False, 'b': False, 'c': True, 'd': False, 'e': False},
'd': {'a': True, 'b': False, 'c': False, 'd': True, 'e': True},
'e': {'a': True, 'b': False, 'c': False, 'd': True, 'e': True}}
df2 = {'a': {'a': True, 'b': False, 'c': True, 'd': False, 'e': False},
'b': {'a': False, 'b': True, 'c': False, 'd': False, 'e': False},
'c': {'a': True, 'b': False, 'c': True, 'd': False, 'e': False},
'd': {'a': False, 'b': False, 'c': False, 'd': True, 'e': False},
'e': {'a': False, 'b': False, 'c': False, 'd': False, 'e': True}}
df1 = DataFrame(df1)
df2 = DataFrame(df2)
_check_bin_op(operator.and_)
_check_bin_op(operator.or_)
_check_bin_op(operator.xor)
_check_unary_op(operator.neg)
def test_neg(self):
# what to do?
assert_frame_equal(-self.frame, -1 * self.frame)
def test_first_last_valid(self):
N = len(self.frame.index)
mat = randn(N)
mat[:5] = nan
mat[-5:] = nan
frame = DataFrame({'foo' : mat}, index=self.frame.index)
index = frame.first_valid_index()
self.assert_(index == frame.index[5])
index = frame.last_valid_index()
self.assert_(index == frame.index[-6])
def test_arith_flex_frame(self):
res_add = self.frame.add(self.frame)
res_sub = self.frame.sub(self.frame)
res_mul = self.frame.mul(self.frame)
res_div = self.frame.div(2 * self.frame)
assert_frame_equal(res_add, self.frame + self.frame)
assert_frame_equal(res_sub, self.frame - self.frame)
assert_frame_equal(res_mul, self.frame * self.frame)
assert_frame_equal(res_div, self.frame / (2 * self.frame))
const_add = self.frame.add(1)
assert_frame_equal(const_add, self.frame + 1)
# corner cases
result = self.frame.add(self.frame[:0])
assert_frame_equal(result, self.frame * np.nan)
result = self.frame[:0].add(self.frame)
assert_frame_equal(result, self.frame * np.nan)
def test_arith_flex_series(self):
df = self.simple
row = df.xs('a')
col = df['two']
assert_frame_equal(df.add(row), df + row)
assert_frame_equal(df.add(row, axis=None), df + row)
assert_frame_equal(df.sub(row), df - row)
assert_frame_equal(df.div(row), df / row)
assert_frame_equal(df.mul(row), df * row)
assert_frame_equal(df.add(col, axis=0), (df.T + col).T)
assert_frame_equal(df.sub(col, axis=0), (df.T - col).T)
assert_frame_equal(df.div(col, axis=0), (df.T / col).T)
assert_frame_equal(df.mul(col, axis=0), (df.T * col).T)
def test_arith_non_pandas_object(self):
df = self.simple
val1 = df.xs('a').values
added = DataFrame(df.values + val1, index=df.index, columns=df.columns)
assert_frame_equal(df + val1, added)
added = DataFrame((df.values.T + val1).T,
index=df.index, columns=df.columns)
assert_frame_equal(df.add(val1, axis=0), added)
val2 = list(df['two'])
added = DataFrame(df.values + val2, index=df.index, columns=df.columns)
assert_frame_equal(df + val2, added)
added = DataFrame((df.values.T + val2).T, index=df.index,
columns=df.columns)
assert_frame_equal(df.add(val2, axis='index'), added)
val3 = np.random.rand(*df.shape)
added = DataFrame(df.values + val3, index=df.index, columns=df.columns)
assert_frame_equal(df.add(val3), added)
def test_combineFrame(self):
frame_copy = self.frame.reindex(self.frame.index[::2])
del frame_copy['D']
frame_copy['C'][:5] = nan
added = self.frame + frame_copy
tm.assert_dict_equal(added['A'].valid(),
self.frame['A'] * 2,
compare_keys=False)
self.assert_(np.isnan(added['C'].reindex(frame_copy.index)[:5]).all())
# assert(False)
self.assert_(np.isnan(added['D']).all())
self_added = self.frame + self.frame
self.assert_(self_added.index.equals(self.frame.index))
added_rev = frame_copy + self.frame
self.assert_(np.isnan(added['D']).all())
# corner cases
# empty
plus_empty = self.frame + self.empty
self.assert_(np.isnan(plus_empty.values).all())
empty_plus = self.empty + self.frame
self.assert_(np.isnan(empty_plus.values).all())
empty_empty = self.empty + self.empty
self.assert_(not empty_empty)
# out of order
reverse = self.frame.reindex(columns=self.frame.columns[::-1])
assert_frame_equal(reverse + self.frame, self.frame * 2)
def test_combineSeries(self):
# Series
series = self.frame.xs(self.frame.index[0])
added = self.frame + series
for key, s in added.iteritems():
assert_series_equal(s, self.frame[key] + series[key])
larger_series = series.to_dict()
larger_series['E'] = 1
larger_series = Series(larger_series)
larger_added = self.frame + larger_series
for key, s in self.frame.iteritems():
assert_series_equal(larger_added[key], s + series[key])
self.assert_('E' in larger_added)
self.assert_(np.isnan(larger_added['E']).all())
# TimeSeries
ts = self.tsframe['A']
added = self.tsframe + ts
for key, col in self.tsframe.iteritems():
assert_series_equal(added[key], col + ts)
smaller_frame = self.tsframe[:-5]
smaller_added = smaller_frame + ts
self.assert_(smaller_added.index.equals(self.tsframe.index))
smaller_ts = ts[:-5]
smaller_added2 = self.tsframe + smaller_ts
assert_frame_equal(smaller_added, smaller_added2)
# length 0
result = self.tsframe + ts[:0]
# Frame is length 0
result = self.tsframe[:0] + ts
self.assertEqual(len(result), 0)
# empty but with non-empty index
frame = self.tsframe[:1].reindex(columns=[])
result = frame * ts
self.assertEqual(len(result), len(ts))
def test_combineFunc(self):
result = self.frame * 2
self.assert_(np.array_equal(result.values, self.frame.values * 2))
result = self.empty * 2
self.assert_(result.index is self.empty.index)
self.assertEqual(len(result.columns), 0)
def test_comparisons(self):
df1 = tm.makeTimeDataFrame()
df2 = tm.makeTimeDataFrame()
row = self.simple.xs('a')
def test_comp(func):
result = func(df1, df2)
self.assert_(np.array_equal(result.values,
func(df1.values, df2.values)))
result2 = func(self.simple, row)
self.assert_(np.array_equal(result2.values,
func(self.simple.values, row.values)))
result3 = func(self.frame, 0)
self.assert_(np.array_equal(result3.values,
func(self.frame.values, 0)))
self.assertRaises(Exception, func, self.simple, self.simple[:2])
test_comp(operator.eq)
test_comp(operator.ne)
test_comp(operator.lt)
test_comp(operator.gt)
test_comp(operator.ge)
test_comp(operator.le)
def test_to_csv_from_csv(self):
path = '__tmp__'
self.frame['A'][:5] = nan
self.frame.to_csv(path)
self.frame.to_csv(path, cols=['A', 'B'])
self.frame.to_csv(path, header=False)
self.frame.to_csv(path, index=False)
# test roundtrip
self.tsframe.to_csv(path)
recons = DataFrame.from_csv(path)
assert_frame_equal(self.tsframe, recons)
self.tsframe.to_csv(path, index_label='index')
recons = DataFrame.from_csv(path, index_col=None)
assert(len(recons.columns) == len(self.tsframe.columns) + 1)
# no index
self.tsframe.to_csv(path, index=False)
recons = DataFrame.from_csv(path, index_col=None)
assert_almost_equal(self.tsframe.values, recons.values)
# corner case
dm = DataFrame({'s1' : Series(range(3),range(3)),
's2' : Series(range(2),range(2))})
dm.to_csv(path)
recons = DataFrame.from_csv(path)
assert_frame_equal(dm, recons)
os.remove(path)
def test_to_csv_multiindex(self):
path = '__tmp__'
frame = self.frame
old_index = frame.index
arrays = np.arange(len(old_index)*2).reshape(2,-1)
new_index = MultiIndex.from_arrays(arrays, names=['first', 'second'])
frame.index = new_index
frame.to_csv(path, header=False)
frame.to_csv(path, cols=['A', 'B'])
# round trip
frame.to_csv(path)
df = DataFrame.from_csv(path, index_col=[0,1], parse_dates=False)
assert_frame_equal(frame, df)
self.assertEqual(frame.index.names, df.index.names)
self.frame.index = old_index # needed if setUP becomes a classmethod
# try multiindex with dates
tsframe = self.tsframe
old_index = tsframe.index
new_index = [old_index, np.arange(len(old_index))]
tsframe.index = MultiIndex.from_arrays(new_index)
tsframe.to_csv(path, index_label = ['time','foo'])
recons = DataFrame.from_csv(path, index_col=[0,1])
assert_frame_equal(tsframe, recons)
# do not load index
tsframe.to_csv(path)
recons = DataFrame.from_csv(path, index_col=None)
np.testing.assert_equal(len(recons.columns), len(tsframe.columns) + 2)
# no index
tsframe.to_csv(path, index=False)
recons = DataFrame.from_csv(path, index_col=None)
assert_almost_equal(recons.values, self.tsframe.values)
self.tsframe.index = old_index # needed if setUP becomes classmethod
os.remove(path)
# empty
tsframe[:0].to_csv(path)
recons = DataFrame.from_csv(path)
assert_frame_equal(recons, tsframe[:0])
def test_to_csv_float32_nanrep(self):
df = DataFrame(np.random.randn(1, 4).astype(np.float32))
df[1] = np.nan
pth = '__tmp__.csv'
df.to_csv(pth, na_rep=999)
lines = open(pth).readlines()
self.assert_(lines[1].split(',')[2] == '999')
os.remove(pth)
def test_to_csv_withcommas(self):
path = '__tmp__'
# Commas inside fields should be correctly escaped when saving as CSV.
df = DataFrame({'A':[1,2,3], 'B':['5,6','7,8','9,0']})
df.to_csv(path)
df2 = DataFrame.from_csv(path)
assert_frame_equal(df2, df)
os.remove(path)
def test_to_csv_bug(self):
path = '__tmp__.csv'
f1 = StringIO('a,1.0\nb,2.0')
df = DataFrame.from_csv(f1,header=None)
newdf = DataFrame({'t': df[df.columns[0]]})
newdf.to_csv(path)
recons = pan.read_csv(path, index_col=0)
assert_frame_equal(recons, newdf)
os.remove(path)
def test_to_csv_unicode(self):
path = '__tmp__.csv'
df = DataFrame({u'c/\u03c3':[1,2,3]})
df.to_csv(path, encoding='UTF-8')
df2 = pan.read_csv(path, index_col=0, encoding='UTF-8')
assert_frame_equal(df, df2)
df.to_csv(path, encoding='UTF-8', index=False)
df2 = pan.read_csv(path, index_col=None, encoding='UTF-8')
assert_frame_equal(df, df2)
os.remove(path)
def test_to_csv_stringio(self):
buf = StringIO()
self.frame.to_csv(buf)
buf.seek(0)
recons = pan.read_csv(buf, index_col=0)
assert_frame_equal(recons, self.frame)
def test_to_excel_from_excel(self):
try:
import xlwt
import xlrd
import openpyxl
except ImportError:
raise nose.SkipTest
for ext in ['xls', 'xlsx']:
path = '__tmp__.' + ext
self.frame['A'][:5] = nan
self.frame.to_excel(path,'test1')
self.frame.to_excel(path,'test1', cols=['A', 'B'])
self.frame.to_excel(path,'test1', header=False)
self.frame.to_excel(path,'test1', index=False)
# test roundtrip
self.frame.to_excel(path,'test1')
reader = ExcelFile(path)
recons = reader.parse('test1', index_col=0)
assert_frame_equal(self.frame, recons)
self.frame.to_excel(path,'test1', index=False)
reader = ExcelFile(path)
recons = reader.parse('test1', index_col=None)
recons.index = self.frame.index
assert_frame_equal(self.frame, recons)
self.frame.to_excel(path,'test1')
reader = ExcelFile(path)
recons = reader.parse('test1', index_col=0, skiprows=[1])
assert_frame_equal(self.frame.ix[1:], recons)
self.frame.to_excel(path,'test1',na_rep='NA')
reader = ExcelFile(path)
recons = reader.parse('test1', index_col=0, na_values=['NA'])
assert_frame_equal(self.frame, recons)
self.mixed_frame.to_excel(path,'test1')
reader = ExcelFile(path)
recons = reader.parse('test1', index_col=0)
assert_frame_equal(self.mixed_frame, recons)
self.tsframe.to_excel(path, 'test1')
reader = ExcelFile(path)
recons = reader.parse('test1')
assert_frame_equal(self.tsframe, recons)
#Test np.int64
frame = DataFrame(np.random.randn(10,2))
frame.to_excel(path,'test1')
reader = ExcelFile(path)
recons = reader.parse('test1')
assert_frame_equal(frame, recons)
# Test writing to separate sheets
writer = ExcelWriter(path)
self.frame.to_excel(writer,'test1')
self.tsframe.to_excel(writer,'test2')
writer.save()
reader = ExcelFile(path)
recons = reader.parse('test1',index_col=0)
assert_frame_equal(self.frame, recons)
recons = reader.parse('test2',index_col=0)
assert_frame_equal(self.tsframe, recons)
np.testing.assert_equal(2, len(reader.sheet_names))
np.testing.assert_equal('test1', reader.sheet_names[0])
np.testing.assert_equal('test2', reader.sheet_names[1])
os.remove(path)
# datetime.date, not sure what to test here exactly
path = '__tmp__.xls'
tsf = self.tsframe.copy()
tsf.index = [x.date() for x in self.tsframe.index]
tsf.to_excel(path, 'test1')
reader = ExcelFile(path)
recons = reader.parse('test1')
assert_frame_equal(self.tsframe, recons)
os.remove(path)
def test_to_excel_multiindex(self):
try:
import xlwt
import xlrd
import openpyxl
except ImportError:
raise nose.SkipTest
for ext in ['xls', 'xlsx']:
path = '__tmp__.' + ext
frame = self.frame
old_index = frame.index
arrays = np.arange(len(old_index)*2).reshape(2,-1)
new_index = MultiIndex.from_arrays(arrays,
names=['first', 'second'])
frame.index = new_index
frame.to_excel(path, 'test1', header=False)
frame.to_excel(path, 'test1', cols=['A', 'B'])
# round trip
frame.to_excel(path, 'test1')
reader = ExcelFile(path)
df = reader.parse('test1', index_col=[0,1], parse_dates=False)
assert_frame_equal(frame, df)
self.assertEqual(frame.index.names, df.index.names)
self.frame.index = old_index # needed if setUP becomes a classmethod
# try multiindex with dates
tsframe = self.tsframe
old_index = tsframe.index
new_index = [old_index, np.arange(len(old_index))]
tsframe.index = MultiIndex.from_arrays(new_index)
tsframe.to_excel(path, 'test1', index_label = ['time','foo'])
reader = ExcelFile(path)
recons = reader.parse('test1', index_col=[0,1])
assert_frame_equal(tsframe, recons)
# infer index
tsframe.to_excel(path, 'test1')
reader = ExcelFile(path)
recons = reader.parse('test1')
assert_frame_equal(tsframe, recons)
# no index
tsframe.index.names = ['first', 'second']
tsframe.to_excel(path, 'test1')
reader = ExcelFile(path)
recons = reader.parse('test1')
assert_almost_equal(tsframe.values,
recons.ix[:, tsframe.columns].values)
self.assertEqual(len(tsframe.columns) + 2, len(recons.columns))
tsframe.index.names = [None, None]
# no index
tsframe.to_excel(path, 'test1', index=False)
reader = ExcelFile(path)
recons = reader.parse('test1', index_col=None)
assert_almost_equal(recons.values, self.tsframe.values)
self.tsframe.index = old_index # needed if setUP becomes classmethod
# write a big DataFrame
df = DataFrame(np.random.randn(1005, 1))
df.to_excel(path, 'test1')
os.remove(path)
def test_info(self):
io = StringIO()
self.frame.info(buf=io)
self.tsframe.info(buf=io)
def test_dtypes(self):
self.mixed_frame['bool'] = self.mixed_frame['A'] > 0
result = self.mixed_frame.dtypes
expected = Series(dict((k, v.dtype)
for k, v in self.mixed_frame.iteritems()),
index=result.index)
assert_series_equal(result, expected)
def test_convert_objects(self):
oops = self.mixed_frame.T.T
converted = oops.convert_objects()
assert_frame_equal(converted, self.mixed_frame)
self.assert_(converted['A'].dtype == np.float64)
def test_convert_objects_no_conversion(self):
mixed1 = DataFrame({'a': [1,2,3], 'b': [4.0, 5, 6], 'c': ['x','y','z']})
mixed2 = mixed1.convert_objects()
assert_frame_equal(mixed1, mixed2)
def test_append_series_dict(self):
df = DataFrame(np.random.randn(5, 4),
columns=['foo', 'bar', 'baz', 'qux'])
series = df.ix[4]
self.assertRaises(Exception, df.append, series)
series.name = None
self.assertRaises(Exception, df.append, series)
result = df.append(series[::-1], ignore_index=True)
expected = df.append(DataFrame({0 : series[::-1]}, index=df.columns).T, ignore_index=True)
assert_frame_equal(result, expected)
# dict
result = df.append(series.to_dict(), ignore_index=True)
assert_frame_equal(result, expected)
result = df.append(series[::-1][:3], ignore_index=True)
expected = df.append(DataFrame({0 : series[::-1][:3]}).T,
ignore_index=True)
assert_frame_equal(result, expected.ix[:, result.columns])
# can append when name set
row = df.ix[4]
row.name = 5
result = df.append(row)
expected = df.append(df[-1:], ignore_index=True)
assert_frame_equal(result, expected)
def test_append_list_of_series_dicts(self):
df = DataFrame(np.random.randn(5, 4),
columns=['foo', 'bar', 'baz', 'qux'])
dicts = [x.to_dict() for idx, x in df.iterrows()]
result = df.append(dicts, ignore_index=True)
expected = df.append(df, ignore_index=True)
assert_frame_equal(result, expected)
# different columns
dicts = [{'foo': 1, 'bar': 2, 'baz': 3, 'peekaboo': 4},
{'foo': 5, 'bar': 6, 'baz': 7, 'peekaboo': 8}]
result = df.append(dicts, ignore_index=True)
expected = df.append(DataFrame(dicts), ignore_index=True)
assert_frame_equal(result, expected)
def test_asfreq(self):
offset_monthly = self.tsframe.asfreq(datetools.bmonthEnd)
rule_monthly = self.tsframe.asfreq('EOM')
assert_almost_equal(offset_monthly['A'], rule_monthly['A'])
filled = rule_monthly.asfreq('WEEKDAY', method='pad')
# TODO: actually check that this worked.
# don't forget!
filled_dep = rule_monthly.asfreq('WEEKDAY', method='pad')
# test does not blow up on length-0 DataFrame
zero_length = self.tsframe.reindex([])
result = zero_length.asfreq('EOM')
self.assert_(result is not zero_length)
def test_asfreq_DateRange(self):
from pandas.core.daterange import DateRange
df = DataFrame({'A': [1,2,3]},
index=[datetime(2011,11,01), datetime(2011,11,2),
datetime(2011,11,3)])
df = df.asfreq('WEEKDAY')
self.assert_(isinstance(df.index, DateRange))
ts = df['A'].asfreq('WEEKDAY')
self.assert_(isinstance(ts.index, DateRange))
def test_as_matrix(self):
frame = self.frame
mat = frame.as_matrix()
frameCols = frame.columns
for i, row in enumerate(mat):
for j, value in enumerate(row):
col = frameCols[j]
if np.isnan(value):
self.assert_(np.isnan(frame[col][i]))
else:
self.assertEqual(value, frame[col][i])
# mixed type
mat = self.mixed_frame.as_matrix(['foo', 'A'])
self.assertEqual(mat[0, 0], 'bar')
# single block corner case
mat = self.frame.as_matrix(['A', 'B'])
expected = self.frame.reindex(columns=['A', 'B']).values
assert_almost_equal(mat, expected)
def test_values(self):
self.frame.values[:, 0] = 5.
self.assert_((self.frame.values[:, 0] == 5).all())
def test_deepcopy(self):
cp = deepcopy(self.frame)
series = cp['A']
series[:] = 10
for idx, value in series.iteritems():
self.assertNotEqual(self.frame['A'][idx], value)
def test_copy(self):
cop = self.frame.copy()
cop['E'] = cop['A']
self.assert_('E' not in self.frame)
# copy objects
copy = self.mixed_frame.copy()
self.assert_(copy._data is not self.mixed_frame._data)
# def test_copy_index_name_checking(self):
# # don't want to be able to modify the index stored elsewhere after
# # making a copy
# self.frame.columns.name = None
# cp = self.frame.copy()
# cp.columns.name = 'foo'
# self.assert_(self.frame.columns.name is None)
def test_corr(self):
self.frame['A'][:5] = nan
self.frame['B'][:10] = nan
def _check_method(method='pearson'):
correls = self.frame.corr(method=method)
exp = self.frame['A'].corr(self.frame['C'], method=method)
assert_almost_equal(correls['A']['C'], exp)
_check_method('pearson')
_check_method('kendall')
_check_method('spearman')
# exclude non-numeric types
result = self.mixed_frame.corr()
expected = self.mixed_frame.ix[:, ['A', 'B', 'C', 'D']].corr()
assert_frame_equal(result, expected)
def test_cov(self):
self.frame['A'][:5] = nan
self.frame['B'][:10] = nan
cov = self.frame.cov()
assert_almost_equal(cov['A']['C'],
self.frame['A'].cov(self.frame['C']))
# exclude non-numeric types
result = self.mixed_frame.cov()
expected = self.mixed_frame.ix[:, ['A', 'B', 'C', 'D']].cov()
assert_frame_equal(result, expected)
def test_corrwith(self):
a = self.tsframe
noise = Series(randn(len(a)), index=a.index)
b = self.tsframe + noise
# make sure order does not matter
b = b.reindex(columns=b.columns[::-1], index=b.index[::-1][10:])
del b['B']
colcorr = a.corrwith(b, axis=0)
assert_almost_equal(colcorr['A'], a['A'].corr(b['A']))
rowcorr = a.corrwith(b, axis=1)
assert_series_equal(rowcorr, a.T.corrwith(b.T, axis=0))
dropped = a.corrwith(b, axis=0, drop=True)
assert_almost_equal(dropped['A'], a['A'].corr(b['A']))
self.assert_('B' not in dropped)
dropped = a.corrwith(b, axis=1, drop=True)
self.assert_(a.index[-1] not in dropped.index)
# non time-series data
index = ['a', 'b', 'c', 'd', 'e']
columns = ['one', 'two', 'three', 'four']
df1 = DataFrame(randn(5, 4), index=index, columns=columns)
df2 = DataFrame(randn(4, 4), index=index[:4], columns=columns)
correls = df1.corrwith(df2, axis=1)
for row in index[:4]:
assert_almost_equal(correls[row], df1.ix[row].corr(df2.ix[row]))
def test_corrwith_with_objects(self):
df1 = tm.makeTimeDataFrame()
df2 = tm.makeTimeDataFrame()
cols = ['A', 'B', 'C', 'D']
df1['obj'] = 'foo'
df2['obj'] = 'bar'
result = df1.corrwith(df2)
expected = df1.ix[:, cols].corrwith(df2.ix[:, cols])
assert_series_equal(result, expected)
result = df1.corrwith(df2, axis=1)
expected = df1.ix[:, cols].corrwith(df2.ix[:, cols], axis=1)
assert_series_equal(result, expected)
def test_dropEmptyRows(self):
N = len(self.frame.index)
mat = randn(N)
mat[:5] = nan
frame = DataFrame({'foo' : mat}, index=self.frame.index)
smaller_frame = frame.dropna(how='all')
self.assert_(np.array_equal(smaller_frame['foo'], mat[5:]))
smaller_frame = frame.dropna(how='all', subset=['foo'])
self.assert_(np.array_equal(smaller_frame['foo'], mat[5:]))
def test_dropIncompleteRows(self):
N = len(self.frame.index)
mat = randn(N)
mat[:5] = nan
frame = DataFrame({'foo' : mat}, index=self.frame.index)
frame['bar'] = 5
smaller_frame = frame.dropna()
self.assert_(np.array_equal(smaller_frame['foo'], mat[5:]))
samesize_frame = frame.dropna(subset=['bar'])
self.assert_(samesize_frame.index.equals(self.frame.index))
def test_dropna(self):
df = DataFrame(np.random.randn(6, 4))
df[2][:2] = nan
dropped = df.dropna(axis=1)
expected = df.ix[:, [0, 1, 3]]
assert_frame_equal(dropped, expected)
dropped = df.dropna(axis=0)
expected = df.ix[range(2, 6)]
assert_frame_equal(dropped, expected)
# threshold
dropped = df.dropna(axis=1, thresh=5)
expected = df.ix[:, [0, 1, 3]]
assert_frame_equal(dropped, expected)
dropped = df.dropna(axis=0, thresh=4)
expected = df.ix[range(2, 6)]
assert_frame_equal(dropped, expected)
dropped = df.dropna(axis=1, thresh=4)
assert_frame_equal(dropped, df)
dropped = df.dropna(axis=1, thresh=3)
assert_frame_equal(dropped, df)
# subset
dropped = df.dropna(axis=0, subset=[0, 1, 3])
assert_frame_equal(dropped, df)
# all
dropped = df.dropna(axis=1, how='all')
assert_frame_equal(dropped, df)
df[2] = nan
dropped = df.dropna(axis=1, how='all')
expected = df.ix[:, [0, 1, 3]]
assert_frame_equal(dropped, expected)
def test_dropna_corner(self):
# bad input
self.assertRaises(ValueError, self.frame.dropna, how='foo')
self.assertRaises(ValueError, self.frame.dropna, how=None)
def test_drop_duplicates(self):
df = DataFrame({'A' : ['foo', 'bar', 'foo', 'bar',
'foo', 'bar', 'bar', 'foo'],
'B' : ['one', 'one', 'two', 'two',
'two', 'two', 'one', 'two'],
'C' : [1, 1, 2, 2, 2, 2, 1, 2],
'D' : range(8)})
# single column
result = df.drop_duplicates('A')
expected = df[:2]
assert_frame_equal(result, expected)
result = df.drop_duplicates('A', take_last=True)
expected = df.ix[[6, 7]]
assert_frame_equal(result, expected)
# multi column
result = df.drop_duplicates(['A', 'B'])
expected = df.ix[[0, 1, 2, 3]]
assert_frame_equal(result, expected)
result = df.drop_duplicates(['A', 'B'], take_last=True)
expected = df.ix[[0, 5, 6, 7]]
assert_frame_equal(result, expected)
# consider everything
df2 = df.ix[:, ['A', 'B', 'C']]
result = df2.drop_duplicates()
# in this case only
expected = df2.drop_duplicates(['A', 'B'])
assert_frame_equal(result, expected)
result = df2.drop_duplicates(take_last=True)
expected = df2.drop_duplicates(['A', 'B'], take_last=True)
assert_frame_equal(result, expected)
def test_drop_col_still_multiindex(self):
arrays = [[ 'a', 'b', 'c', 'top'],
[ '', '', '', 'OD' ],
[ '', '', '', 'wx' ]]
tuples = zip(*arrays)
tuples.sort()
index = MultiIndex.from_tuples(tuples)
df = DataFrame(randn(3,4), columns=index)
del df[('a','','')]
assert(isinstance(df.columns, MultiIndex))
def test_fillna(self):
self.tsframe['A'][:5] = nan
self.tsframe['A'][-5:] = nan
zero_filled = self.tsframe.fillna(0)
self.assert_((zero_filled['A'][:5] == 0).all())
padded = self.tsframe.fillna(method='pad')
self.assert_(np.isnan(padded['A'][:5]).all())
self.assert_((padded['A'][-5:] == padded['A'][-5]).all())
# mixed type
self.mixed_frame['foo'][5:20] = nan
self.mixed_frame['A'][-10:] = nan
result = self.mixed_frame.fillna(value=0)
def test_truncate(self):
offset = datetools.bday
ts = self.tsframe[::3]
start, end = self.tsframe.index[3], self.tsframe.index[6]
start_missing = self.tsframe.index[2]
end_missing = self.tsframe.index[7]
# neither specified
truncated = ts.truncate()
assert_frame_equal(truncated, ts)
# both specified
expected = ts[1:3]
truncated = ts.truncate(start, end)
assert_frame_equal(truncated, expected)
truncated = ts.truncate(start_missing, end_missing)
assert_frame_equal(truncated, expected)
# start specified
expected = ts[1:]
truncated = ts.truncate(before=start)
assert_frame_equal(truncated, expected)
truncated = ts.truncate(before=start_missing)
assert_frame_equal(truncated, expected)
# end specified
expected = ts[:3]
truncated = ts.truncate(after=end)
assert_frame_equal(truncated, expected)
truncated = ts.truncate(after=end_missing)
assert_frame_equal(truncated, expected)
def test_truncate_copy(self):
index = self.tsframe.index
truncated = self.tsframe.truncate(index[5], index[10])
truncated.values[:] = 5.
self.assert_(not (self.tsframe.values[5:11] == 5).any())
def test_xs(self):
idx = self.frame.index[5]
xs = self.frame.xs(idx)
for item, value in xs.iteritems():
if np.isnan(value):
self.assert_(np.isnan(self.frame[item][idx]))
else:
self.assertEqual(value, self.frame[item][idx])
# mixed-type xs
test_data = {
'A' : {'1' : 1, '2' : 2},
'B' : {'1' : '1', '2' : '2', '3' : '3'},
}
frame = DataFrame(test_data)
xs = frame.xs('1')
self.assert_(xs.dtype == np.object_)
self.assertEqual(xs['A'], 1)
self.assertEqual(xs['B'], '1')
self.assertRaises(Exception, self.tsframe.xs,
self.tsframe.index[0] - datetools.bday)
# xs get column
series = self.frame.xs('A', axis=1)
expected = self.frame['A']
assert_series_equal(series, expected)
# no view by default
series[:] = 5
self.assert_((expected != 5).all())
# view
series = self.frame.xs('A', axis=1, copy=False)
series[:] = 5
self.assert_((expected == 5).all())
def test_xs_corner(self):
# pathological mixed-type reordering case
df = DataFrame(index=[0])
df['A'] = 1.
df['B'] = 'foo'
df['C'] = 2.
df['D'] = 'bar'
df['E'] = 3.
xs = df.xs(0)
assert_almost_equal(xs, [1., 'foo', 2., 'bar', 3.])
# no columns but index
df = DataFrame(index=['a', 'b', 'c'])
result = df.xs('a')
expected = Series([])
assert_series_equal(result, expected)
def test_pivot(self):
data = {
'index' : ['A', 'B', 'C', 'C', 'B', 'A'],
'columns' : ['One', 'One', 'One', 'Two', 'Two', 'Two'],
'values' : [1., 2., 3., 3., 2., 1.]
}
frame = DataFrame(data)
pivoted = frame.pivot(index='index', columns='columns', values='values')
expected = DataFrame({
'One' : {'A' : 1., 'B' : 2., 'C' : 3.},
'Two' : {'A' : 1., 'B' : 2., 'C' : 3.}
})
assert_frame_equal(pivoted, expected)
# name tracking
self.assertEqual(pivoted.index.name, 'index')
self.assertEqual(pivoted.columns.name, 'columns')
# don't specify values
pivoted = frame.pivot(index='index', columns='columns')
self.assertEqual(pivoted.index.name, 'index')
self.assertEqual(pivoted.columns.names, [None, 'columns'])
# pivot multiple columns
wp = tm.makePanel()
lp = wp.to_frame()
df = lp.reset_index()
assert_frame_equal(df.pivot('major', 'minor'), lp.unstack())
def test_pivot_duplicates(self):
data = DataFrame({'a' : ['bar', 'bar', 'foo', 'foo', 'foo'],
'b' : ['one', 'two', 'one', 'one', 'two'],
'c' : [1., 2., 3., 3., 4.]})
self.assertRaises(Exception, data.pivot, 'a', 'b', 'c')
def test_pivot_empty(self):
df = DataFrame({}, columns=['a', 'b', 'c'])
result = df.pivot('a', 'b', 'c')
expected = DataFrame({})
assert_frame_equal(result, expected)
def test_reindex(self):
newFrame = self.frame.reindex(self.ts1.index)
for col in newFrame.columns:
for idx, val in newFrame[col].iteritems():
if idx in self.frame.index:
if np.isnan(val):
self.assert_(np.isnan(self.frame[col][idx]))
else:
self.assertEqual(val, self.frame[col][idx])
else:
self.assert_(np.isnan(val))
for col, series in newFrame.iteritems():
self.assert_(tm.equalContents(series.index, newFrame.index))
emptyFrame = self.frame.reindex(Index([]))
self.assert_(len(emptyFrame.index) == 0)
# Cython code should be unit-tested directly
nonContigFrame = self.frame.reindex(self.ts1.index[::2])
for col in nonContigFrame.columns:
for idx, val in nonContigFrame[col].iteritems():
if idx in self.frame.index:
if np.isnan(val):
self.assert_(np.isnan(self.frame[col][idx]))
else:
self.assertEqual(val, self.frame[col][idx])
else:
self.assert_(np.isnan(val))
for col, series in nonContigFrame.iteritems():
self.assert_(tm.equalContents(series.index,
nonContigFrame.index))
# corner cases
# Same index, copies values
newFrame = self.frame.reindex(self.frame.index)
self.assert_(newFrame.index is self.frame.index)
# length zero
newFrame = self.frame.reindex([])
self.assert_(not newFrame)
self.assertEqual(len(newFrame.columns), len(self.frame.columns))
# length zero with columns reindexed with non-empty index
newFrame = self.frame.reindex([])
newFrame = newFrame.reindex(self.frame.index)
self.assertEqual(len(newFrame.index), len(self.frame.index))
self.assertEqual(len(newFrame.columns), len(self.frame.columns))
# pass non-Index
newFrame = self.frame.reindex(list(self.ts1.index))
self.assert_(newFrame.index.equals(self.ts1.index))
def test_reindex_int(self):
smaller = self.intframe.reindex(self.intframe.index[::2])
self.assert_(smaller['A'].dtype == np.int64)
bigger = smaller.reindex(self.intframe.index)
self.assert_(bigger['A'].dtype == np.float64)
smaller = self.intframe.reindex(columns=['A', 'B'])
self.assert_(smaller['A'].dtype == np.int64)
def test_reindex_like(self):
other = self.frame.reindex(index=self.frame.index[:10],
columns=['C', 'B'])
assert_frame_equal(other, self.frame.reindex_like(other))
def test_reindex_columns(self):
newFrame = self.frame.reindex(columns=['A', 'B', 'E'])
assert_series_equal(newFrame['B'], self.frame['B'])
self.assert_(np.isnan(newFrame['E']).all())
self.assert_('C' not in newFrame)
# length zero
newFrame = self.frame.reindex(columns=[])
self.assert_(not newFrame)
def test_add_index(self):
df = DataFrame({'A' : ['foo', 'foo', 'foo', 'bar', 'bar'],
'B' : ['one', 'two', 'three', 'one', 'two'],
'C' : ['a', 'b', 'c', 'd', 'e'],
'D' : np.random.randn(5),
'E' : np.random.randn(5)})
# new object, single-column
result = df.set_index('C')
result_nodrop = df.set_index('C', drop=False)
index = Index(df['C'], name='C')
expected = df.ix[:, ['A', 'B', 'D', 'E']]
expected.index = index
expected_nodrop = df.copy()
expected_nodrop.index = index
assert_frame_equal(result, expected)
assert_frame_equal(result_nodrop, expected_nodrop)
self.assertEqual(result.index.name, index.name)
# inplace, single
df2 = df.copy()
df2.set_index('C', inplace=True)
assert_frame_equal(df2, expected)
df3 = df.copy()
df3.set_index('C', drop=False, inplace=True)
assert_frame_equal(df3, expected_nodrop)
# create new object, multi-column
result = df.set_index(['A', 'B'])
result_nodrop = df.set_index(['A', 'B'], drop=False)
index = MultiIndex.from_arrays([df['A'], df['B']], names=['A', 'B'])
expected = df.ix[:, ['C', 'D', 'E']]
expected.index = index
expected_nodrop = df.copy()
expected_nodrop.index = index
assert_frame_equal(result, expected)
assert_frame_equal(result_nodrop, expected_nodrop)
self.assertEqual(result.index.names, index.names)
# inplace
df2 = df.copy()
df2.set_index(['A', 'B'], inplace=True)
assert_frame_equal(df2, expected)
df3 = df.copy()
df3.set_index(['A', 'B'], drop=False, inplace=True)
assert_frame_equal(df3, expected_nodrop)
# corner case
self.assertRaises(Exception, df.set_index, 'A')
def test_align(self):
af, bf = self.frame.align(self.frame)
self.assert_(af._data is not self.frame._data)
af, bf = self.frame.align(self.frame, copy=False)
self.assert_(af._data is self.frame._data)
# axis = 0
other = self.frame.ix[:-5, :3]
af, bf = self.frame.align(other, axis=0)
self.assert_(bf.columns.equals(other.columns))
af, bf = self.frame.align(other, join='right', axis=0)
self.assert_(bf.columns.equals(other.columns))
self.assert_(bf.index.equals(other.index))
self.assert_(af.index.equals(other.index))
# axis = 1
other = self.frame.ix[:-5, :3].copy()
af, bf = self.frame.align(other, axis=1)
self.assert_(bf.columns.equals(self.frame.columns))
self.assert_(bf.index.equals(other.index))
af, bf = self.frame.align(other, join='inner', axis=1)
self.assert_(bf.columns.equals(other.columns))
# try to align dataframe to series along bad axis
self.assertRaises(ValueError, self.frame.align, af.ix[0,:3],
join='inner', axis=2)
#----------------------------------------------------------------------
# Transposing
def test_transpose(self):
frame = self.frame
dft = frame.T
for idx, series in dft.iteritems():
for col, value in series.iteritems():
if np.isnan(value):
self.assert_(np.isnan(frame[col][idx]))
else:
self.assertEqual(value, frame[col][idx])
# mixed type
index, data = tm.getMixedTypeDict()
mixed = DataFrame(data, index=index)
mixed_T = mixed.T
for col, s in mixed_T.iteritems():
self.assert_(s.dtype == np.object_)
def test_transpose_get_view(self):
dft = self.frame.T
dft.values[:, 5:10] = 5
self.assert_((self.frame.values[5:10] == 5).all())
#----------------------------------------------------------------------
# Renaming
def test_rename(self):
mapping = {
'A' : 'a',
'B' : 'b',
'C' : 'c',
'D' : 'd'
}
bad_mapping = {
'A' : 'a',
'B' : 'b',
'C' : 'b',
'D' : 'd'
}
renamed = self.frame.rename(columns=mapping)
renamed2 = self.frame.rename(columns=str.lower)
assert_frame_equal(renamed, renamed2)
assert_frame_equal(renamed2.rename(columns=str.upper),
self.frame)
self.assertRaises(Exception, self.frame.rename,
columns=bad_mapping)
# index
data = {
'A' : {'foo' : 0, 'bar' : 1}
}
# gets sorted alphabetical
df = DataFrame(data)
renamed = df.rename(index={'foo' : 'bar', 'bar' : 'foo'})
self.assert_(np.array_equal(renamed.index, ['foo', 'bar']))
renamed = df.rename(index=str.upper)
self.assert_(np.array_equal(renamed.index, ['BAR', 'FOO']))
# have to pass something
self.assertRaises(Exception, self.frame.rename)
# partial columns
renamed = self.frame.rename(columns={'C' : 'foo', 'D' : 'bar'})
self.assert_(np.array_equal(renamed.columns, ['A', 'B', 'foo', 'bar']))
# other axis
renamed = self.frame.T.rename(index={'C' : 'foo', 'D' : 'bar'})
self.assert_(np.array_equal(renamed.index, ['A', 'B', 'foo', 'bar']))
def test_rename_nocopy(self):
renamed = self.frame.rename(columns={'C' : 'foo'}, copy=False)
renamed['foo'] = 1.
self.assert_((self.frame['C'] == 1.).all())
#----------------------------------------------------------------------
# Time series related
def test_diff(self):
the_diff = self.tsframe.diff(1)
assert_series_equal(the_diff['A'],
self.tsframe['A'] - self.tsframe['A'].shift(1))
def test_shift(self):
# naive shift
shiftedFrame = self.tsframe.shift(5)
self.assert_(shiftedFrame.index.equals(self.tsframe.index))
shiftedSeries = self.tsframe['A'].shift(5)
assert_series_equal(shiftedFrame['A'], shiftedSeries)
shiftedFrame = self.tsframe.shift(-5)
self.assert_(shiftedFrame.index.equals(self.tsframe.index))
shiftedSeries = self.tsframe['A'].shift(-5)
assert_series_equal(shiftedFrame['A'], shiftedSeries)
# shift by 0
unshifted = self.tsframe.shift(0)
assert_frame_equal(unshifted, self.tsframe)
# shift by DateOffset
shiftedFrame = self.tsframe.shift(5, offset=datetools.BDay())
self.assert_(len(shiftedFrame) == len(self.tsframe))
shiftedFrame2 = self.tsframe.shift(5, timeRule='WEEKDAY')
assert_frame_equal(shiftedFrame, shiftedFrame2)
d = self.tsframe.index[0]
shifted_d = d + datetools.BDay(5)
assert_series_equal(self.tsframe.xs(d),
shiftedFrame.xs(shifted_d))
# shift int frame
int_shifted = self.intframe.shift(1)
def test_apply(self):
# ufunc
applied = self.frame.apply(np.sqrt)
assert_series_equal(np.sqrt(self.frame['A']), applied['A'])
# aggregator
applied = self.frame.apply(np.mean)
self.assertEqual(applied['A'], np.mean(self.frame['A']))
d = self.frame.index[0]
applied = self.frame.apply(np.mean, axis=1)
self.assertEqual(applied[d], np.mean(self.frame.xs(d)))
self.assert_(applied.index is self.frame.index) # want this
# empty
applied = self.empty.apply(np.sqrt)
self.assert_(not applied)
applied = self.empty.apply(np.mean)
self.assert_(not applied)
no_rows = self.frame[:0]
result = no_rows.apply(lambda x: x.mean())
expected = Series(np.nan, index=self.frame.columns)
assert_series_equal(result, expected)
no_cols = self.frame.ix[:, []]
result = no_cols.apply(lambda x: x.mean(), axis=1)
expected = Series(np.nan, index=self.frame.index)
assert_series_equal(result, expected)
def test_apply_broadcast(self):
broadcasted = self.frame.apply(np.mean, broadcast=True)
agged = self.frame.apply(np.mean)
for col, ts in broadcasted.iteritems():
self.assert_((ts == agged[col]).all())
broadcasted = self.frame.apply(np.mean, axis=1, broadcast=True)
agged = self.frame.apply(np.mean, axis=1)
for idx in broadcasted.index:
self.assert_((broadcasted.xs(idx) == agged[idx]).all())
def test_apply_raw(self):
result0 = self.frame.apply(np.mean, raw=True)
result1 = self.frame.apply(np.mean, axis=1, raw=True)
expected0 = self.frame.apply(lambda x: x.values.mean())
expected1 = self.frame.apply(lambda x: x.values.mean(), axis=1)
assert_series_equal(result0, expected0)
assert_series_equal(result1, expected1)
# no reduction
result = self.frame.apply(lambda x: x * 2, raw=True)
expected = self.frame * 2
assert_frame_equal(result, expected)
def test_apply_axis1(self):
d = self.frame.index[0]
tapplied = self.frame.apply(np.mean, axis=1)
self.assertEqual(tapplied[d], np.mean(self.frame.xs(d)))
def test_apply_ignore_failures(self):
result = self.mixed_frame._apply_standard(np.mean, 0,
ignore_failures=True)
expected = self.mixed_frame._get_numeric_data().apply(np.mean)
assert_series_equal(result, expected)
# test with hierarchical index
def test_apply_mixed_dtype_corner(self):
df = DataFrame({'A' : ['foo'],
'B' : [1.]})
result = df[:0].apply(np.mean, axis=1)
# the result here is actually kind of ambiguous, should it be a Series
# or a DataFrame?
expected = Series(np.nan, index=[])
assert_series_equal(result, expected)
def test_apply_empty_infer_type(self):
no_cols = DataFrame(index=['a', 'b', 'c'])
no_index = DataFrame(columns=['a', 'b', 'c'])
def _check(df, f):
test_res = f(np.array([], dtype='f8'))
is_reduction = not isinstance(test_res, np.ndarray)
def _checkit(axis=0, raw=False):
res = df.apply(f, axis=axis, raw=raw)
if is_reduction:
agg_axis = df._get_agg_axis(axis)
self.assert_(isinstance(res, Series))
self.assert_(res.index is agg_axis)
else:
self.assert_(isinstance(res, DataFrame))
_checkit()
_checkit(axis=1)
_checkit(raw=True)
_checkit(axis=0, raw=True)
_check(no_cols, lambda x: x)
_check(no_cols, lambda x: x.mean())
_check(no_index, lambda x: x)
_check(no_index, lambda x: x.mean())
result = no_cols.apply(lambda x: x.mean(), broadcast=True)
self.assert_(isinstance(result, DataFrame))
def test_apply_with_args_kwds(self):
def add_some(x, howmuch=0):
return x + howmuch
def agg_and_add(x, howmuch=0):
return x.mean() + howmuch
def subtract_and_divide(x, sub, divide=1):
return (x - sub) / divide
result = self.frame.apply(add_some, howmuch=2)
exp = self.frame.apply(lambda x: x + 2)
assert_frame_equal(result, exp)
result = self.frame.apply(agg_and_add, howmuch=2)
exp = self.frame.apply(lambda x: x.mean() + 2)
assert_series_equal(result, exp)
res = self.frame.apply(subtract_and_divide, args=(2,), divide=2)
exp = self.frame.apply(lambda x: (x - 2.) / 2.)
assert_frame_equal(res, exp)
def test_apply_yield_list(self):
result = self.frame.apply(list)
assert_frame_equal(result, self.frame)
def test_apply_reduce_Series(self):
self.frame.ix[::2, 'A'] = np.nan
result = self.frame.apply(np.mean, axis=1)
expected = self.frame.mean(1)
assert_series_equal(result, expected)
def test_apply_differently_indexed(self):
df = DataFrame(np.random.randn(20, 10))
result0 = df.apply(Series.describe, axis=0)
expected0 = DataFrame(dict((i, v.describe())
for i, v in df.iteritems()),
columns=df.columns)
assert_frame_equal(result0, expected0)
result1 = df.apply(Series.describe, axis=1)
expected1 = DataFrame(dict((i, v.describe())
for i, v in df.T.iteritems()),
columns=df.index).T
assert_frame_equal(result1, expected1)
def test_apply_modify_traceback(self):
data = DataFrame({'A' : ['foo', 'foo', 'foo', 'foo',
'bar', 'bar', 'bar', 'bar',
'foo', 'foo', 'foo'],
'B' : ['one', 'one', 'one', 'two',
'one', 'one', 'one', 'two',
'two', 'two', 'one'],
'C' : ['dull', 'dull', 'shiny', 'dull',
'dull', 'shiny', 'shiny', 'dull',
'shiny', 'shiny', 'shiny'],
'D' : np.random.randn(11),
'E' : np.random.randn(11),
'F' : np.random.randn(11)})
data['C'][4] = np.nan
def transform(row):
if row['C'].startswith('shin') and row['A'] == 'foo':
row['D'] = 7
return row
def transform2(row):
if (notnull(row['C']) and row['C'].startswith('shin')
and row['A'] == 'foo'):
row['D'] = 7
return row
try:
transformed = data.apply(transform, axis=1)
except Exception, e:
self.assertEqual(len(e.args), 2)
self.assertEqual(e.args[1], 'occurred at index 4')
def test_apply_convert_objects(self):
data = DataFrame({'A' : ['foo', 'foo', 'foo', 'foo',
'bar', 'bar', 'bar', 'bar',
'foo', 'foo', 'foo'],
'B' : ['one', 'one', 'one', 'two',
'one', 'one', 'one', 'two',
'two', 'two', 'one'],
'C' : ['dull', 'dull', 'shiny', 'dull',
'dull', 'shiny', 'shiny', 'dull',
'shiny', 'shiny', 'shiny'],
'D' : np.random.randn(11),
'E' : np.random.randn(11),
'F' : np.random.randn(11)})
result = data.apply(lambda x: x, axis=1)
assert_frame_equal(result, data)
def test_applymap(self):
applied = self.frame.applymap(lambda x: x * 2)
assert_frame_equal(applied, self.frame * 2)
result = self.frame.applymap(type)
# GH #465, function returning tuples
result = self.frame.applymap(lambda x: (x, x))
self.assert_(isinstance(result['A'][0], tuple))
def test_filter(self):
# items
filtered = self.frame.filter(['A', 'B', 'E'])
self.assertEqual(len(filtered.columns), 2)
self.assert_('E' not in filtered)
# like
fcopy = self.frame.copy()
fcopy['AA'] = 1
filtered = fcopy.filter(like='A')
self.assertEqual(len(filtered.columns), 2)
self.assert_('AA' in filtered)
# regex
filtered = fcopy.filter(regex='[A]+')
self.assertEqual(len(filtered.columns), 2)
self.assert_('AA' in filtered)
# pass in None
self.assertRaises(Exception, self.frame.filter, items=None)
# objects
filtered = self.mixed_frame.filter(like='foo')
self.assert_('foo' in filtered)
def test_filter_corner(self):
empty = DataFrame()
result = empty.filter([])
assert_frame_equal(result, empty)
result = empty.filter(like='foo')
assert_frame_equal(result, empty)
def test_select(self):
f = lambda x: x.weekday() == 2
result = self.tsframe.select(f, axis=0)
expected = self.tsframe.reindex(
index=self.tsframe.index[[f(x) for x in self.tsframe.index]])
assert_frame_equal(result, expected)
result = self.frame.select(lambda x: x in ('B', 'D'), axis=1)
expected = self.frame.reindex(columns=['B', 'D'])
assert_frame_equal(result, expected)
def test_sort_index(self):
frame = DataFrame(np.random.randn(4, 4), index=[1, 2, 3, 4],
columns=['A', 'B', 'C', 'D'])
# axis=0
unordered = frame.ix[[3, 2, 4, 1]]
sorted_df = unordered.sort_index()
expected = frame
assert_frame_equal(sorted_df, expected)
sorted_df = unordered.sort_index(ascending=False)
expected = frame[::-1]
assert_frame_equal(sorted_df, expected)
# axis=1
unordered = frame.ix[:, ['D', 'B', 'C', 'A']]
sorted_df = unordered.sort_index(axis=1)
expected = frame
assert_frame_equal(sorted_df, expected)
sorted_df = unordered.sort_index(axis=1, ascending=False)
expected = frame.ix[:, ::-1]
assert_frame_equal(sorted_df, expected)
# by column
sorted_df = frame.sort_index(by='A')
indexer = frame['A'].argsort().values
expected = frame.ix[frame.index[indexer]]
assert_frame_equal(sorted_df, expected)
sorted_df = frame.sort_index(by='A', ascending=False)
indexer = indexer[::-1]
expected = frame.ix[frame.index[indexer]]
assert_frame_equal(sorted_df, expected)
# check for now
sorted_df = frame.sort(column='A')
expected = frame.sort_index(by='A')
assert_frame_equal(sorted_df, expected)
sorted_df = frame.sort(column='A', ascending=False)
expected = frame.sort_index(by='A', ascending=False)
assert_frame_equal(sorted_df, expected)
def test_sort_index_multicolumn(self):
import random
A = np.arange(5).repeat(20)
B = np.tile(np.arange(5), 20)
random.shuffle(A)
random.shuffle(B)
frame = DataFrame({'A' : A, 'B' : B,
'C' : np.random.randn(100)})
result = frame.sort_index(by=['A', 'B'])
indexer = np.lexsort((frame['B'], frame['A']))
expected = frame.take(indexer)
assert_frame_equal(result, expected)
result = frame.sort_index(by=['A', 'B'], ascending=False)
expected = frame.take(indexer[::-1])
assert_frame_equal(result, expected)
result = frame.sort_index(by=['B', 'A'])
indexer = np.lexsort((frame['A'], frame['B']))
expected = frame.take(indexer)
assert_frame_equal(result, expected)
def test_frame_column_inplace_sort_exception(self):
s = self.frame['A']
self.assertRaises(Exception, s.sort)
cp = s.copy()
cp.sort() # it works!
def test_combine_first(self):
# disjoint
head, tail = self.frame[:5], self.frame[5:]
combined = head.combine_first(tail)
reordered_frame = self.frame.reindex(combined.index)
assert_frame_equal(combined, reordered_frame)
self.assert_(tm.equalContents(combined.columns, self.frame.columns))
assert_series_equal(combined['A'], reordered_frame['A'])
# same index
fcopy = self.frame.copy()
fcopy['A'] = 1
del fcopy['C']
fcopy2 = self.frame.copy()
fcopy2['B'] = 0
del fcopy2['D']
combined = fcopy.combine_first(fcopy2)
self.assert_((combined['A'] == 1).all())
assert_series_equal(combined['B'], fcopy['B'])
assert_series_equal(combined['C'], fcopy2['C'])
assert_series_equal(combined['D'], fcopy['D'])
# overlap
head, tail = reordered_frame[:10].copy(), reordered_frame
head['A'] = 1
combined = head.combine_first(tail)
self.assert_((combined['A'][:10] == 1).all())
# reverse overlap
tail['A'][:10] = 0
combined = tail.combine_first(head)
self.assert_((combined['A'][:10] == 0).all())
# no overlap
f = self.frame[:10]
g = self.frame[10:]
combined = f.combine_first(g)
assert_series_equal(combined['A'].reindex(f.index), f['A'])
assert_series_equal(combined['A'].reindex(g.index), g['A'])
# corner cases
comb = self.frame.combine_first(self.empty)
assert_frame_equal(comb, self.frame)
comb = self.empty.combine_first(self.frame)
assert_frame_equal(comb, self.frame)
def test_combine_first_mixed_bug(self):
idx = Index(['a','b','c','e'])
ser1 = Series([5.0,-9.0,4.0,100.],index=idx)
ser2 = Series(['a', 'b', 'c', 'e'], index=idx)
ser3 = Series([12,4,5,97], index=idx)
frame1 = DataFrame({"col0" : ser1,
"col2" : ser2,
"col3" : ser3})
idx = Index(['a','b','c','f'])
ser1 = Series([5.0,-9.0,4.0,100.], index=idx)
ser2 = Series(['a','b','c','f'], index=idx)
ser3 = Series([12,4,5,97],index=idx)
frame2 = DataFrame({"col1" : ser1,
"col2" : ser2,
"col5" : ser3})
combined = frame1.combine_first(frame2)
self.assertEqual(len(combined.columns), 5)
def test_combineAdd(self):
# trivial
comb = self.frame.combineAdd(self.frame)
assert_frame_equal(comb, self.frame * 2)
# more rigorous
a = DataFrame([[1., nan, nan, 2., nan]],
columns=np.arange(5))
b = DataFrame([[2., 3., nan, 2., 6., nan]],
columns=np.arange(6))
expected = DataFrame([[3., 3., nan, 4., 6., nan]],
columns=np.arange(6))
result = a.combineAdd(b)
assert_frame_equal(result, expected)
result2 = a.T.combineAdd(b.T)
assert_frame_equal(result2, expected.T)
expected2 = a.combine(b, operator.add, fill_value=0.)
assert_frame_equal(expected, expected2)
# corner cases
comb = self.frame.combineAdd(self.empty)
assert_frame_equal(comb, self.frame)
comb = self.empty.combineAdd(self.frame)
assert_frame_equal(comb, self.frame)
# integer corner case
df1 = DataFrame({'x':[5]})
df2 = DataFrame({'x':[1]})
df3 = DataFrame({'x':[6]})
comb = df1.combineAdd(df2)
assert_frame_equal(comb, df3)
# TODO: test integer fill corner?
def test_combineMult(self):
# trivial
comb = self.frame.combineMult(self.frame)
assert_frame_equal(comb, self.frame ** 2)
# corner cases
comb = self.frame.combineMult(self.empty)
assert_frame_equal(comb, self.frame)
comb = self.empty.combineMult(self.frame)
assert_frame_equal(comb, self.frame)
def test_combine_generic(self):
df1 = self.frame
df2 = self.frame.ix[:-5, ['A', 'B', 'C']]
combined = df1.combine(df2, np.add)
combined2 = df2.combine(df1, np.add)
self.assert_(combined['D'].isnull().all())
self.assert_(combined2['D'].isnull().all())
chunk = combined.ix[:-5, ['A', 'B', 'C']]
chunk2 = combined2.ix[:-5, ['A', 'B', 'C']]
exp = self.frame.ix[:-5, ['A', 'B', 'C']].reindex_like(chunk) * 2
assert_frame_equal(chunk, exp)
assert_frame_equal(chunk2, exp)
def test_clip(self):
median = self.frame.median().median()
capped = self.frame.clip_upper(median)
self.assert_(not (capped.values > median).any())
floored = self.frame.clip_lower(median)
self.assert_(not (floored.values < median).any())
double = self.frame.clip(upper=median, lower=median)
self.assert_(not (double.values != median).any())
def test_get_X_columns(self):
# numeric and object columns
# Booleans get casted to float in DataFrame, so skip for now
df = DataFrame({'a' : [1, 2, 3],
# 'b' : [True, False, True],
'c' : ['foo', 'bar', 'baz'],
'd' : [None, None, None],
'e' : [3.14, 0.577, 2.773]})
self.assert_(np.array_equal(df._get_numeric_data().columns,
['a', 'e']))
def test_get_numeric_data(self):
df = DataFrame({'a' : 1., 'b' : 2, 'c' : 'foo'},
index=np.arange(10))
result = df._get_numeric_data()
expected = df.ix[:, ['a', 'b']]
assert_frame_equal(result, expected)
only_obj = df.ix[:, ['c']]
result = only_obj._get_numeric_data()
expected = df.ix[:, []]
assert_frame_equal(result, expected)
def test_count(self):
f = lambda s: notnull(s).sum()
self._check_stat_op('count', f,
has_skipna=False,
has_numeric_only=True)
# corner case
frame = DataFrame()
ct1 = frame.count(1)
self.assert_(isinstance(ct1, Series))
ct2 = frame.count(0)
self.assert_(isinstance(ct2, Series))
# GH #423
df = DataFrame(index=range(10))
result = df.count(1)
expected = Series(0, index=df.index)
assert_series_equal(result, expected)
df = DataFrame(columns=range(10))
result = df.count(0)
expected = Series(0, index=df.columns)
assert_series_equal(result, expected)
df = DataFrame()
result = df.count()
expected = Series(0, index=[])
assert_series_equal(result, expected)
def test_sum(self):
self._check_stat_op('sum', np.sum, has_numeric_only=True)
def test_stat_operators_attempt_obj_array(self):
data = {
'a': [-0.00049987540199591344, -0.0016467257772919831,
0.00067695870775883013],
'b': [-0, -0, 0.0],
'c': [0.00031111847529610595, 0.0014902627951905339,
-0.00094099200035979691]
}
df1 = DataFrame(data, index=['foo', 'bar', 'baz'],
dtype='O')
methods = ['sum', 'mean', 'prod', 'var', 'std', 'skew', 'min', 'max']
# GH #676
df2 = DataFrame({0: [np.nan, 2], 1: [np.nan, 3],
2: [np.nan, 4]}, dtype=object)
for df in [df1, df2]:
for meth in methods:
self.assert_(df.values.dtype == np.object_)
result = getattr(df, meth)(1)
expected = getattr(df.astype('f8'), meth)(1)
assert_series_equal(result, expected)
def test_mean(self):
self._check_stat_op('mean', np.mean)
def test_product(self):
self._check_stat_op('product', np.prod)
def test_median(self):
def wrapper(x):
if isnull(x).any():
return np.nan
return np.median(x)
self._check_stat_op('median', wrapper)
def test_min(self):
self._check_stat_op('min', np.min)
self._check_stat_op('min', np.min, frame=self.intframe)
def test_cummin(self):
self.tsframe.ix[5:10, 0] = nan
self.tsframe.ix[10:15, 1] = nan
self.tsframe.ix[15:, 2] = nan
# axis = 0
cummin = self.tsframe.cummin()
expected = self.tsframe.apply(Series.cummin)
assert_frame_equal(cummin, expected)
# axis = 1
cummin = self.tsframe.cummin(axis=1)
expected = self.tsframe.apply(Series.cummin, axis=1)
assert_frame_equal(cummin, expected)
# works
df = DataFrame({'A' : np.arange(20)}, index=np.arange(20))
result = df.cummin()
# fix issue
cummin_xs = self.tsframe.cummin(axis=1)
self.assertEqual(np.shape(cummin_xs), np.shape(self.tsframe))
def test_cummax(self):
self.tsframe.ix[5:10, 0] = nan
self.tsframe.ix[10:15, 1] = nan
self.tsframe.ix[15:, 2] = nan
# axis = 0
cummax = self.tsframe.cummax()
expected = self.tsframe.apply(Series.cummax)
assert_frame_equal(cummax, expected)
# axis = 1
cummax = self.tsframe.cummax(axis=1)
expected = self.tsframe.apply(Series.cummax, axis=1)
assert_frame_equal(cummax, expected)
# works
df = DataFrame({'A' : np.arange(20)}, index=np.arange(20))
result = df.cummax()
# fix issue
cummax_xs = self.tsframe.cummax(axis=1)
self.assertEqual(np.shape(cummax_xs), np.shape(self.tsframe))
def test_max(self):
self._check_stat_op('max', np.max)
self._check_stat_op('max', np.max, frame=self.intframe)
def test_mad(self):
f = lambda x: np.abs(x - x.mean()).mean()
self._check_stat_op('mad', f)
def test_var(self):
alt = lambda x: np.var(x, ddof=1)
self._check_stat_op('var', alt)
def test_std(self):
alt = lambda x: np.std(x, ddof=1)
self._check_stat_op('std', alt)
def test_skew(self):
from scipy.stats import skew
def alt(x):
if len(x) < 3:
return np.nan
return skew(x, bias=False)
self._check_stat_op('skew', alt)
def _check_stat_op(self, name, alternative, frame=None, has_skipna=True,
has_numeric_only=False):
if frame is None:
frame = self.frame
# set some NAs
frame.ix[5:10] = np.nan
frame.ix[15:20, -2:] = np.nan
f = getattr(frame, name)
if has_skipna:
def skipna_wrapper(x):
nona = x.dropna().values
if len(nona) == 0:
return np.nan
return alternative(nona)
def wrapper(x):
return alternative(x.values)
result0 = f(axis=0, skipna=False)
result1 = f(axis=1, skipna=False)
assert_series_equal(result0, frame.apply(wrapper))
assert_series_equal(result1, frame.apply(wrapper, axis=1),
check_dtype=False) # HACK: win32
else:
skipna_wrapper = alternative
wrapper = alternative
result0 = f(axis=0)
result1 = f(axis=1)
assert_series_equal(result0, frame.apply(skipna_wrapper))
assert_series_equal(result1, frame.apply(skipna_wrapper, axis=1),
check_dtype=False)
# result = f(axis=1)
# comp = frame.apply(alternative, axis=1).reindex(result.index)
# assert_series_equal(result, comp)
self.assertRaises(Exception, f, axis=2)
# make sure works on mixed-type frame
getattr(self.mixed_frame, name)(axis=0)
getattr(self.mixed_frame, name)(axis=1)
if has_numeric_only:
getattr(self.mixed_frame, name)(axis=0, numeric_only=True)
getattr(self.mixed_frame, name)(axis=1, numeric_only=True)
getattr(self.frame, name)(axis=0, numeric_only=False)
getattr(self.frame, name)(axis=1, numeric_only=False)
# all NA case
if has_skipna:
all_na = self.frame * np.NaN
r0 = getattr(all_na, name)(axis=0)
r1 = getattr(all_na, name)(axis=1)
self.assert_(np.isnan(r0).all())
self.assert_(np.isnan(r1).all())
def test_sum_corner(self):
axis0 = self.empty.sum(0)
axis1 = self.empty.sum(1)
self.assert_(isinstance(axis0, Series))
self.assert_(isinstance(axis1, Series))
self.assertEquals(len(axis0), 0)
self.assertEquals(len(axis1), 0)
def test_sum_object(self):
values = self.frame.values.astype(int)
frame = DataFrame(values, index=self.frame.index,
columns=self.frame.columns)
deltas = frame * timedelta(1)
deltas.sum()
def test_sum_bool(self):
# ensure this works, bug report
bools = np.isnan(self.frame)
bools.sum(1)
bools.sum(0)
def test_mean_corner(self):
# unit test when have object data
the_mean = self.mixed_frame.mean(axis=0)
the_sum = self.mixed_frame.sum(axis=0, numeric_only=True)
self.assert_(the_sum.index.equals(the_mean.index))
self.assert_(len(the_mean.index) < len(self.mixed_frame.columns))
# xs sum mixed type, just want to know it works...
the_mean = self.mixed_frame.mean(axis=1)
the_sum = self.mixed_frame.sum(axis=1, numeric_only=True)
self.assert_(the_sum.index.equals(the_mean.index))
# take mean of boolean column
self.frame['bool'] = self.frame['A'] > 0
means = self.frame.mean(0)
self.assertEqual(means['bool'], self.frame['bool'].values.mean())
def test_stats_mixed_type(self):
# don't blow up
self.mixed_frame.std(1)
self.mixed_frame.var(1)
self.mixed_frame.mean(1)
self.mixed_frame.skew(1)
def test_median_corner(self):
def wrapper(x):
if isnull(x).any():
return np.nan
return np.median(x)
self._check_stat_op('median', wrapper, frame=self.intframe)
def test_quantile(self):
try:
from scipy.stats import scoreatpercentile
except ImportError:
return
q = self.tsframe.quantile(0.1, axis=0)
self.assertEqual(q['A'], scoreatpercentile(self.tsframe['A'], 10))
q = self.tsframe.quantile(0.9, axis=1)
q = self.intframe.quantile(0.1)
self.assertEqual(q['A'], scoreatpercentile(self.intframe['A'], 10))
# test degenerate case
q = DataFrame({'x':[],'y':[]}).quantile(0.1, axis=0)
assert(np.isnan(q['x']) and np.isnan(q['y']))
def test_cumsum(self):
self.tsframe.ix[5:10, 0] = nan
self.tsframe.ix[10:15, 1] = nan
self.tsframe.ix[15:, 2] = nan
# axis = 0
cumsum = self.tsframe.cumsum()
expected = self.tsframe.apply(Series.cumsum)
assert_frame_equal(cumsum, expected)
# axis = 1
cumsum = self.tsframe.cumsum(axis=1)
expected = self.tsframe.apply(Series.cumsum, axis=1)
assert_frame_equal(cumsum, expected)
# works
df = DataFrame({'A' : np.arange(20)}, index=np.arange(20))
result = df.cumsum()
# fix issue
cumsum_xs = self.tsframe.cumsum(axis=1)
self.assertEqual(np.shape(cumsum_xs), np.shape(self.tsframe))
def test_cumprod(self):
self.tsframe.ix[5:10, 0] = nan
self.tsframe.ix[10:15, 1] = nan
self.tsframe.ix[15:, 2] = nan
# axis = 0
cumprod = self.tsframe.cumprod()
expected = self.tsframe.apply(Series.cumprod)
assert_frame_equal(cumprod, expected)
# axis = 1
cumprod = self.tsframe.cumprod(axis=1)
expected = self.tsframe.apply(Series.cumprod, axis=1)
assert_frame_equal(cumprod, expected)
# fix issue
cumprod_xs = self.tsframe.cumprod(axis=1)
self.assertEqual(np.shape(cumprod_xs), np.shape(self.tsframe))
# ints
df = self.tsframe.astype(int)
df.cumprod(0)
df.cumprod(1)
def test_rank(self):
from scipy.stats import rankdata
self.frame['A'][::2] = np.nan
self.frame['B'][::3] = np.nan
self.frame['C'][::4] = np.nan
self.frame['D'][::5] = np.nan
ranks0 = self.frame.rank()
ranks1 = self.frame.rank(1)
mask = np.isnan(self.frame.values)
fvals = self.frame.fillna(np.inf).values
exp0 = np.apply_along_axis(rankdata, 0, fvals)
exp0[mask] = np.nan
exp1 = np.apply_along_axis(rankdata, 1, fvals)
exp1[mask] = np.nan
assert_almost_equal(ranks0.values, exp0)
assert_almost_equal(ranks1.values, exp1)
def test_rank2(self):
from datetime import datetime
df = DataFrame([['b','c','a'],['a','c','b']])
expected = DataFrame([[2.0, 3.0, 1.0], [1, 3, 2]])
result = df.rank(1, numeric_only=False)
assert_frame_equal(result, expected)
expected = DataFrame([[2.0, 1.5, 1.0], [1, 1.5, 2]])
result = df.rank(0, numeric_only=False)
assert_frame_equal(result, expected)
df = DataFrame([['b',np.nan,'a'],['a','c','b']])
expected = DataFrame([[2.0, nan, 1.0], [1.0, 3.0, 2.0]])
result = df.rank(1, numeric_only=False)
assert_frame_equal(result, expected)
expected = DataFrame([[2.0, nan, 1.0], [1.0, 1.0, 2.0]])
result = df.rank(0, numeric_only=False)
assert_frame_equal(result, expected)
# f7u12, this does not work without extensive workaround
data = [[datetime(2001, 1, 5), nan, datetime(2001, 1, 2)],
[datetime(2000, 1, 2), datetime(2000, 1, 3),
datetime(2000, 1, 1)]]
df = DataFrame(data)
expected = DataFrame([[2., nan, 1.],
[2., 3., 1.]])
result = df.rank(1, numeric_only=False)
assert_frame_equal(result, expected)
# mixed-type frames
self.mixed_frame['foo'] = datetime.now()
result = self.mixed_frame.rank(1)
expected = self.mixed_frame.rank(1, numeric_only=True)
assert_frame_equal(result, expected)
def test_describe(self):
desc = self.tsframe.describe()
desc = self.mixed_frame.describe()
desc = self.frame.describe()
def test_describe_no_numeric(self):
df = DataFrame({'A' : ['foo', 'foo', 'bar'] * 8,
'B' : ['a', 'b', 'c', 'd'] * 6})
desc = df.describe()
expected = DataFrame(dict((k, v.describe())
for k, v in df.iteritems()),
columns=df.columns)
assert_frame_equal(desc, expected)
def test_get_axis_etc(self):
f = self.frame
self.assertEquals(f._get_axis_number(0), 0)
self.assertEquals(f._get_axis_number(1), 1)
self.assertEquals(f._get_axis_name(0), 'index')
self.assertEquals(f._get_axis_name(1), 'columns')
self.assert_(f._get_axis(0) is f.index)
self.assert_(f._get_axis(1) is f.columns)
self.assertRaises(Exception, f._get_axis_number, 2)
def test_combine_first_mixed(self):
a = Series(['a','b'], index=range(2))
b = Series(range(2), index=range(2))
f = DataFrame({'A' : a, 'B' : b})
a = Series(['a','b'], index=range(5, 7))
b = Series(range(2), index=range(5, 7))
g = DataFrame({'A' : a, 'B' : b})
combined = f.combine_first(g)
def test_more_asMatrix(self):
values = self.mixed_frame.as_matrix()
self.assertEqual(values.shape[1], len(self.mixed_frame.columns))
def test_reindex_boolean(self):
frame = DataFrame(np.ones((10, 2), dtype=bool),
index=np.arange(0, 20, 2),
columns=[0, 2])
reindexed = frame.reindex(np.arange(10))
self.assert_(reindexed.values.dtype == np.object_)
self.assert_(isnull(reindexed[0][1]))
reindexed = frame.reindex(columns=range(3))
self.assert_(reindexed.values.dtype == np.object_)
self.assert_(isnull(reindexed[1]).all())
def test_reindex_objects(self):
reindexed = self.mixed_frame.reindex(columns=['foo', 'A', 'B'])
self.assert_('foo' in reindexed)
reindexed = self.mixed_frame.reindex(columns=['A', 'B'])
self.assert_('foo' not in reindexed)
def test_reindex_corner(self):
index = Index(['a', 'b', 'c'])
dm = self.empty.reindex(index=[1, 2, 3])
reindexed = dm.reindex(columns=index)
self.assert_(reindexed.columns.equals(index))
# ints are weird
smaller = self.intframe.reindex(columns=['A', 'B', 'E'])
self.assert_(smaller['E'].dtype == np.float64)
def test_reindex_axis(self):
cols = ['A', 'B', 'E']
reindexed1 = self.intframe.reindex_axis(cols, axis=1)
reindexed2 = self.intframe.reindex(columns=cols)
assert_frame_equal(reindexed1, reindexed2)
rows = self.intframe.index[0:5]
reindexed1 = self.intframe.reindex_axis(rows, axis=0)
reindexed2 = self.intframe.reindex(index=rows)
assert_frame_equal(reindexed1, reindexed2)
self.assertRaises(ValueError, self.intframe.reindex_axis, rows, axis=2)
# no-op case
cols = self.frame.columns.copy()
newFrame = self.frame.reindex_axis(cols, axis=1)
assert_frame_equal(newFrame, self.frame)
def test_rename_objects(self):
renamed = self.mixed_frame.rename(columns=str.upper)
self.assert_('FOO' in renamed)
self.assert_('foo' not in renamed)
def test_fill_corner(self):
self.mixed_frame['foo'][5:20] = nan
self.mixed_frame['A'][-10:] = nan
filled = self.mixed_frame.fillna(value=0)
self.assert_((filled['foo'][5:20] == 0).all())
del self.mixed_frame['foo']
empty_float = self.frame.reindex(columns=[])
result = empty_float.fillna(value=0)
def test_count_objects(self):
dm = DataFrame(self.mixed_frame._series)
df = DataFrame(self.mixed_frame._series)
tm.assert_series_equal(dm.count(), df.count())
tm.assert_series_equal(dm.count(1), df.count(1))
def test_cumsum_corner(self):
dm = DataFrame(np.arange(20).reshape(4, 5),
index=range(4), columns=range(5))
result = dm.cumsum()
#----------------------------------------------------------------------
# Stacking / unstacking
def test_stack_unstack(self):
stacked = self.frame.stack()
stacked_df = DataFrame({'foo' : stacked, 'bar' : stacked})
unstacked = stacked.unstack()
unstacked_df = stacked_df.unstack()
assert_frame_equal(unstacked, self.frame)
assert_frame_equal(unstacked_df['bar'], self.frame)
unstacked_cols = stacked.unstack(0)
unstacked_cols_df = stacked_df.unstack(0)
assert_frame_equal(unstacked_cols.T, self.frame)
assert_frame_equal(unstacked_cols_df['bar'].T, self.frame)
def test_unstack_to_series(self):
# check reversibility
data = self.frame.unstack()
self.assertTrue(isinstance(data, Series))
undo = data.unstack().T
assert_frame_equal(undo, self.frame)
# check NA handling
data = DataFrame({'x': [1, 2, np.NaN], 'y': [3.0, 4, np.NaN]})
data.index = Index(['a','b','c'])
result = data.unstack()
midx = MultiIndex(levels=[['x','y'],['a','b','c']],
labels=[[0,0,0,1,1,1],[0,1,2,0,1,2]])
expected = Series([1,2,np.NaN,3,4,np.NaN], index=midx)
assert_series_equal(result, expected)
# check composability of unstack
old_data = data.copy()
for _ in xrange(4):
data = data.unstack()
assert_frame_equal(old_data, data)
def test_reset_index(self):
stacked = self.frame.stack()[::2]
stacked = DataFrame({'foo' : stacked, 'bar' : stacked})
names = ['first', 'second']
stacked.index.names = names
deleveled = stacked.reset_index()
for i, (lev, lab) in enumerate(zip(stacked.index.levels,
stacked.index.labels)):
values = lev.take(lab)
name = names[i]
assert_almost_equal(values, deleveled[name])
stacked.index.names = [None, None]
deleveled2 = stacked.reset_index()
self.assert_(np.array_equal(deleveled['first'],
deleveled2['level_0']))
self.assert_(np.array_equal(deleveled['second'],
deleveled2['level_1']))
# default name assigned
rdf = self.frame.reset_index()
self.assert_(np.array_equal(rdf['index'], self.frame.index.values))
# default name assigned, corner case
df = self.frame.copy()
df['index'] = 'foo'
rdf = df.reset_index()
self.assert_(np.array_equal(rdf['level_0'], self.frame.index.values))
# but this is ok
self.frame.index.name = 'index'
deleveled = self.frame.reset_index()
self.assert_(np.array_equal(deleveled['index'],
self.frame.index.values))
self.assert_(np.array_equal(deleveled.index,
np.arange(len(deleveled))))
# preserve column names
self.frame.columns.name = 'columns'
resetted = self.frame.reset_index()
self.assertEqual(resetted.columns.name, 'columns')
def test_reset_index_right_dtype(self):
time = np.arange(0.0, 10, np.sqrt(2)/2)
s1 = Series((9.81 * time ** 2) /2,
index=Index(time, name='time'),
name='speed')
df = DataFrame(s1)
resetted = s1.reset_index()
self.assert_(resetted['time'].dtype == np.float64)
resetted = df.reset_index()
self.assert_(resetted['time'].dtype == np.float64)
#----------------------------------------------------------------------
# Tests to cope with refactored internals
def test_as_matrix_numeric_cols(self):
self.frame['foo'] = 'bar'
values = self.frame.as_matrix(['A', 'B', 'C', 'D'])
self.assert_(values.dtype == np.float64)
def test_constructor_frame_copy(self):
cop = DataFrame(self.frame, copy=True)
cop['A'] = 5
self.assert_((cop['A'] == 5).all())
self.assert_(not (self.frame['A'] == 5).all())
def test_constructor_ndarray_copy(self):
df = DataFrame(self.frame.values)
self.frame.values[5] = 5
self.assert_((df.values[5] == 5).all())
df = DataFrame(self.frame.values, copy=True)
self.frame.values[6] = 6
self.assert_(not (df.values[6] == 6).all())
def test_constructor_series_copy(self):
series = self.frame._series
df = DataFrame({'A' : series['A']})
df['A'][:] = 5
self.assert_(not (series['A'] == 5).all())
def test_assign_columns(self):
self.frame['hi'] = 'there'
frame = self.frame.copy()
frame.columns = ['foo', 'bar', 'baz', 'quux', 'foo2']
assert_series_equal(self.frame['C'], frame['baz'])
assert_series_equal(self.frame['hi'], frame['foo2'])
def test_cast_internals(self):
casted = DataFrame(self.frame._data, dtype=int)
expected = DataFrame(self.frame._series, dtype=int)
assert_frame_equal(casted, expected)
def test_consolidate(self):
self.frame['E'] = 7.
consolidated = self.frame.consolidate()
self.assert_(len(consolidated._data.blocks) == 1)
# Ensure copy, do I want this?
recons = consolidated.consolidate()
self.assert_(recons is not consolidated)
assert_frame_equal(recons, consolidated)
self.frame['F'] = 8.
self.assert_(len(self.frame._data.blocks) == 3)
self.frame.consolidate(inplace=True)
self.assert_(len(self.frame._data.blocks) == 1)
def test_as_matrix_consolidate(self):
self.frame['E'] = 7.
self.assert_(not self.frame._data.is_consolidated())
_ = self.frame.as_matrix()
self.assert_(self.frame._data.is_consolidated())
def test_modify_values(self):
self.frame.values[5] = 5
self.assert_((self.frame.values[5] == 5).all())
# unconsolidated
self.frame['E'] = 7.
self.frame.values[6] = 6
self.assert_((self.frame.values[6] == 6).all())
def test_boolean_set_uncons(self):
self.frame['E'] = 7.
expected = self.frame.values.copy()
expected[expected > 1] = 2
self.frame[self.frame > 1] = 2
assert_almost_equal(expected, self.frame.values)
def test_boolean_set_mixed_type(self):
bools = self.mixed_frame.applymap(lambda x: x != 2).astype(bool)
self.assertRaises(Exception, self.mixed_frame.__setitem__, bools, 2)
def test_xs_view(self):
dm = DataFrame(np.arange(20.).reshape(4, 5),
index=range(4), columns=range(5))
dm.xs(2, copy=False)[:] = 5
self.assert_((dm.xs(2) == 5).all())
dm.xs(2)[:] = 10
self.assert_((dm.xs(2) == 5).all())
# TODO (?): deal with mixed-type fiasco?
self.assertRaises(Exception, self.mixed_frame.xs,
self.mixed_frame.index[2], copy=False)
# unconsolidated
dm['foo'] = 6.
dm.xs(3, copy=False)[:] = 10
self.assert_((dm.xs(3) == 10).all())
def test_boolean_indexing(self):
idx = range(3)
cols = range(3)
df1 = DataFrame(index=idx, columns=cols, \
data=np.array([[0.0, 0.5, 1.0],
[1.5, 2.0, 2.5],
[3.0, 3.5, 4.0]], dtype=float))
df2 = DataFrame(index=idx, columns=cols, data=np.ones((len(idx), len(cols))))
expected = DataFrame(index=idx, columns=cols, \
data=np.array([[0.0, 0.5, 1.0],
[1.5, 2.0, -1],
[-1, -1, -1]], dtype=float))
df1[df1 > 2.0 * df2] = -1
assert_frame_equal(df1, expected)
def test_sum_bools(self):
df = DataFrame(index=range(1), columns=range(10))
bools = np.isnan(df)
self.assert_(bools.sum(axis=1)[0] == 10)
def test_fillna_col_reordering(self):
idx = range(20)
cols = ["COL." + str(i) for i in range(5, 0, -1)]
data = np.random.rand(20, 5)
df = DataFrame(index=range(20), columns=cols, data=data)
self.assert_(df.columns.tolist() == df.fillna().columns.tolist())
def test_take(self):
# homogeneous
#----------------------------------------
# mixed-dtype
#----------------------------------------
order = [4, 1, 2, 0, 3]
result = self.mixed_frame.take(order, axis=0)
expected = self.mixed_frame.reindex(self.mixed_frame.index.take(order))
assert_frame_equal(result, expected)
# axis = 1
result = self.mixed_frame.take(order, axis=1)
expected = self.mixed_frame.ix[:, ['foo', 'B', 'C', 'A', 'D']]
assert_frame_equal(result, expected)
def test_iterkv_names(self):
for k, v in self.mixed_frame.iterkv():
self.assertEqual(v.name, k)
def test_series_put_names(self):
series = self.mixed_frame._series
for k, v in series.iteritems():
self.assertEqual(v.name, k)
def test_dot(self):
a = DataFrame(np.random.randn(3, 4), index=['a', 'b', 'c'],
columns=['p', 'q', 'r', 's'])
b = DataFrame(np.random.randn(4, 2), index=['p', 'q', 'r', 's'],
columns=['one', 'two'])
result = a.dot(b)
expected = DataFrame(np.dot(a.values, b.values),
index=['a', 'b', 'c'],
columns=['one', 'two'])
assert_frame_equal(result, expected)
def test_idxmin(self):
frame = self.frame
frame.ix[5:10] = np.nan
frame.ix[15:20, -2:] = np.nan
for skipna in [True, False]:
for axis in [0, 1]:
for df in [frame, self.intframe]:
result = df.idxmin(axis=axis, skipna=skipna)
expected = df.apply(Series.idxmin, axis=axis, skipna=skipna)
assert_series_equal(result, expected)
self.assertRaises(Exception, frame.idxmin, axis=2)
def test_idxmax(self):
frame = self.frame
frame.ix[5:10] = np.nan
frame.ix[15:20, -2:] = np.nan
for skipna in [True, False]:
for axis in [0, 1]:
for df in [frame, self.intframe]:
result = df.idxmax(axis=axis, skipna=skipna)
expected = df.apply(Series.idxmax, axis=axis, skipna=skipna)
assert_series_equal(result, expected)
self.assertRaises(Exception, frame.idxmax, axis=2)
def test_stale_cached_series_bug_473(self):
Y = DataFrame(np.random.random((4, 4)), index=('a', 'b','c','d'),
columns=('e','f','g','h'))
repr(Y)
Y['e'] = Y['e'].astype('object')
Y['g']['c'] = np.NaN
repr(Y)
result = Y.sum()
exp = Y['g'].sum()
self.assert_(isnull(Y['g']['c']))
if __name__ == '__main__':
# unittest.main()
import nose
# nose.runmodule(argv=[__file__,'-vvs','-x', '--ipdb-failure'],
# exit=False)
nose.runmodule(argv=[__file__,'-vvs','-x','--pdb', '--pdb-failure'],
exit=False)
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