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<span class="target" id="module-G2DBinaryString"></span><div class="section" id="g2dbinarystring-the-classical-binary-string-chromosome">
<h1><a class="reference internal" href="#module-G2DBinaryString" title="G2DBinaryString"><tt class="xref py py-mod docutils literal"><span class="pre">G2DBinaryString</span></tt></a> – the classical binary string chromosome<a class="headerlink" href="#g2dbinarystring-the-classical-binary-string-chromosome" title="Permalink to this headline">¶</a></h1>
<p>This representation is a 2D Binary String, the string looks like
this matrix:</p>
<p>00101101010
00100011010
00101101010
10100101000</p>
<div class="section" id="default-parameters">
<h2>Default Parameters<a class="headerlink" href="#default-parameters" title="Permalink to this headline">¶</a></h2>
<p><em>Initializator</em></p>
<blockquote>
<div><p><a class="reference internal" href="module_initializators.html#Initializators.G2DBinaryStringInitializator" title="Initializators.G2DBinaryStringInitializator"><tt class="xref py py-func docutils literal"><span class="pre">Initializators.G2DBinaryStringInitializator()</span></tt></a></p>
<p>The Binatry String Initializator for G2DBinaryString</p>
</div></blockquote>
<p><em>Mutator</em></p>
<blockquote>
<div><p><a class="reference internal" href="module_mutators.html#Mutators.G2DBinaryStringMutatorFlip" title="Mutators.G2DBinaryStringMutatorFlip"><tt class="xref py py-func docutils literal"><span class="pre">Mutators.G2DBinaryStringMutatorFlip()</span></tt></a></p>
<p>The Flip Mutator for G2DBinaryString</p>
</div></blockquote>
<p><em>Crossover</em></p>
<blockquote>
<div><p><tt class="xref py py-func docutils literal"><span class="pre">Crossovers.G2DBinaryStringXSinglePoint()</span></tt></p>
<p>The Single Point Crossover for G2DBinaryString</p>
</div></blockquote>
<p class="versionadded">
<span class="versionmodified">New in version 0.6: </span>Added the module <a class="reference internal" href="#module-G2DBinaryString" title="G2DBinaryString"><tt class="xref py py-mod docutils literal"><span class="pre">G2DBinaryString</span></tt></a></p>
</div>
<div class="section" id="class">
<h2>Class<a class="headerlink" href="#class" title="Permalink to this headline">¶</a></h2>
<dl class="class">
<dt id="G2DBinaryString.G2DBinaryString">
<em class="property">class </em><tt class="descclassname">G2DBinaryString.</tt><tt class="descname">G2DBinaryString</tt><big>(</big><em>height</em>, <em>width</em><big>)</big><a class="headerlink" href="#G2DBinaryString.G2DBinaryString" title="Permalink to this definition">¶</a></dt>
<dd><p>G3DBinaryString Class - The 2D Binary String chromosome</p>
<p>Inheritance diagram for <a class="reference internal" href="#G2DBinaryString.G2DBinaryString" title="G2DBinaryString.G2DBinaryString"><tt class="xref py py-class docutils literal"><span class="pre">G2DBinaryString.G2DBinaryString</span></tt></a>:</p>
<p class="graphviz">
<img src="_images/inheritance-88ded489bcc4ec131725f4bafc59066a88b88a38.png" alt="Inheritance diagram of G2DBinaryString.G2DBinaryString" usemap="#inheritance9fda80fa61" class="inheritance"/>
<map id="inheritance9fda80fa61" name="inheritance9fda80fa61">
<area shape="rect" id="node1" href="#G2DBinaryString.G2DBinaryString" title="G2DBinaryString.G2DBinaryString" alt="" coords="255,5,492,43"/>
<area shape="rect" id="node2" href="module_genomebase.html#GenomeBase.GenomeBase" title="GenomeBase.GenomeBase" alt="" coords="5,5,205,43"/>
</map>
</p>
<dl class="docutils">
<dt>Example:</dt>
<dd><div class="first last highlight-python"><div class="highlight"><pre><span class="gp">>>> </span><span class="n">genome</span> <span class="o">=</span> <span class="n">G2DBinaryString</span><span class="o">.</span><span class="n">G2DBinaryString</span><span class="p">(</span><span class="mi">10</span><span class="p">,</span> <span class="mi">12</span><span class="p">)</span>
</pre></div>
</div>
</dd>
</dl>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
<tbody valign="top">
<tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
<li><strong>height</strong> – the number of rows</li>
<li><strong>width</strong> – the number of columns</li>
</ul>
</td>
</tr>
</tbody>
</table>
<dl class="method">
<dt id="G2DBinaryString.G2DBinaryString.clearString">
<tt class="descname">clearString</tt><big>(</big><big>)</big><a class="headerlink" href="#G2DBinaryString.G2DBinaryString.clearString" title="Permalink to this definition">¶</a></dt>
<dd><p>Remove all genes from Genome</p>
</dd></dl>
<dl class="method">
<dt id="G2DBinaryString.G2DBinaryString.clone">
<tt class="descname">clone</tt><big>(</big><big>)</big><a class="headerlink" href="#G2DBinaryString.G2DBinaryString.clone" title="Permalink to this definition">¶</a></dt>
<dd><p>Return a new instace copy of the genome</p>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
<tbody valign="top">
<tr class="field"><th class="field-name">Return type:</th><td class="field-body">the G2DBinaryString clone instance</td>
</tr>
</tbody>
</table>
</dd></dl>
<dl class="method">
<dt id="G2DBinaryString.G2DBinaryString.copy">
<tt class="descname">copy</tt><big>(</big><em>g</em><big>)</big><a class="headerlink" href="#G2DBinaryString.G2DBinaryString.copy" title="Permalink to this definition">¶</a></dt>
<dd><p>Copy genome to ‘g’</p>
<dl class="docutils">
<dt>Example:</dt>
<dd><div class="first last highlight-python"><div class="highlight"><pre><span class="gp">>>> </span><span class="n">genome_origin</span><span class="o">.</span><span class="n">copy</span><span class="p">(</span><span class="n">genome_destination</span><span class="p">)</span>
</pre></div>
</div>
</dd>
</dl>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
<tbody valign="top">
<tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><strong>g</strong> – the destination G2DBinaryString instance</td>
</tr>
</tbody>
</table>
</dd></dl>
<dl class="attribute">
<dt id="G2DBinaryString.G2DBinaryString.crossover">
<tt class="descname">crossover</tt><a class="headerlink" href="#G2DBinaryString.G2DBinaryString.crossover" title="Permalink to this definition">¶</a></dt>
<dd><p>This is the reproduction function slot, the crossover. You
can change the default crossover method using:</p>
<div class="highlight-python"><div class="highlight"><pre><span class="n">genome</span><span class="o">.</span><span class="n">crossover</span><span class="o">.</span><span class="n">set</span><span class="p">(</span><span class="n">Crossovers</span><span class="o">.</span><span class="n">G2DBinaryStringXUniform</span><span class="p">)</span>
</pre></div>
</div>
</dd></dl>
<dl class="method">
<dt id="G2DBinaryString.G2DBinaryString.evaluate">
<tt class="descname">evaluate</tt><big>(</big><em>**args</em><big>)</big><a class="headerlink" href="#G2DBinaryString.G2DBinaryString.evaluate" title="Permalink to this definition">¶</a></dt>
<dd><p>Called to evaluate genome</p>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
<tbody valign="top">
<tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><strong>args</strong> – this parameters will be passes to the evaluator</td>
</tr>
</tbody>
</table>
</dd></dl>
<dl class="attribute">
<dt id="G2DBinaryString.G2DBinaryString.evaluator">
<tt class="descname">evaluator</tt><a class="headerlink" href="#G2DBinaryString.G2DBinaryString.evaluator" title="Permalink to this definition">¶</a></dt>
<dd><p>This is the <a class="reference internal" href="intro.html#term-evaluation-function"><em class="xref std std-term">evaluation function</em></a> slot, you can add
a function with the <em>set</em> method:</p>
<div class="highlight-python"><div class="highlight"><pre><span class="n">genome</span><span class="o">.</span><span class="n">evaluator</span><span class="o">.</span><span class="n">set</span><span class="p">(</span><span class="n">eval_func</span><span class="p">)</span>
</pre></div>
</div>
</dd></dl>
<dl class="method">
<dt id="G2DBinaryString.G2DBinaryString.getFitnessScore">
<tt class="descname">getFitnessScore</tt><big>(</big><big>)</big><a class="headerlink" href="#G2DBinaryString.G2DBinaryString.getFitnessScore" title="Permalink to this definition">¶</a></dt>
<dd><p>Get the Fitness Score of the genome</p>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
<tbody valign="top">
<tr class="field"><th class="field-name">Return type:</th><td class="field-body">genome fitness score</td>
</tr>
</tbody>
</table>
</dd></dl>
<dl class="method">
<dt id="G2DBinaryString.G2DBinaryString.getHeight">
<tt class="descname">getHeight</tt><big>(</big><big>)</big><a class="headerlink" href="#G2DBinaryString.G2DBinaryString.getHeight" title="Permalink to this definition">¶</a></dt>
<dd><p>Return the height (lines) of the List</p>
</dd></dl>
<dl class="method">
<dt id="G2DBinaryString.G2DBinaryString.getItem">
<tt class="descname">getItem</tt><big>(</big><em>x</em>, <em>y</em><big>)</big><a class="headerlink" href="#G2DBinaryString.G2DBinaryString.getItem" title="Permalink to this definition">¶</a></dt>
<dd><p>Return the specified gene of List</p>
<dl class="docutils">
<dt>Example:</dt>
<dd><div class="first last highlight-python"><div class="highlight"><pre><span class="gp">>>> </span><span class="n">genome</span><span class="o">.</span><span class="n">getItem</span><span class="p">(</span><span class="mi">3</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
<span class="go">0</span>
</pre></div>
</div>
</dd>
</dl>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
<tbody valign="top">
<tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
<li><strong>x</strong> – the x index, the column</li>
<li><strong>y</strong> – the y index, the row</li>
</ul>
</td>
</tr>
<tr class="field"><th class="field-name">Return type:</th><td class="field-body"><p class="first last">the item at x,y position</p>
</td>
</tr>
</tbody>
</table>
</dd></dl>
<dl class="method">
<dt id="G2DBinaryString.G2DBinaryString.getParam">
<tt class="descname">getParam</tt><big>(</big><em>key</em>, <em>nvl=None</em><big>)</big><a class="headerlink" href="#G2DBinaryString.G2DBinaryString.getParam" title="Permalink to this definition">¶</a></dt>
<dd><p>Gets an internal parameter</p>
<dl class="docutils">
<dt>Example:</dt>
<dd><div class="first last highlight-python"><div class="highlight"><pre><span class="gp">>>> </span><span class="n">genome</span><span class="o">.</span><span class="n">getParam</span><span class="p">(</span><span class="s">"rangemax"</span><span class="p">)</span>
<span class="go">100</span>
</pre></div>
</div>
</dd>
</dl>
<div class="admonition note">
<p class="first admonition-title">Note</p>
<p class="last">All the individuals of the population shares this parameters and uses
the same instance of this dict.</p>
</div>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
<tbody valign="top">
<tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
<li><strong>key</strong> – the key of param</li>
<li><strong>nvl</strong> – if the key doesn’t exist, the nvl will be returned</li>
</ul>
</td>
</tr>
</tbody>
</table>
</dd></dl>
<dl class="method">
<dt id="G2DBinaryString.G2DBinaryString.getRawScore">
<tt class="descname">getRawScore</tt><big>(</big><big>)</big><a class="headerlink" href="#G2DBinaryString.G2DBinaryString.getRawScore" title="Permalink to this definition">¶</a></dt>
<dd><p>Get the Raw Score of the genome</p>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
<tbody valign="top">
<tr class="field"><th class="field-name">Return type:</th><td class="field-body">genome raw score</td>
</tr>
</tbody>
</table>
</dd></dl>
<dl class="method">
<dt id="G2DBinaryString.G2DBinaryString.getSize">
<tt class="descname">getSize</tt><big>(</big><big>)</big><a class="headerlink" href="#G2DBinaryString.G2DBinaryString.getSize" title="Permalink to this definition">¶</a></dt>
<dd><p>Returns a tuple (height, widht)</p>
<dl class="docutils">
<dt>Example:</dt>
<dd><div class="first last highlight-python"><div class="highlight"><pre><span class="gp">>>> </span><span class="n">genome</span><span class="o">.</span><span class="n">getSize</span><span class="p">()</span>
<span class="go">(3, 2)</span>
</pre></div>
</div>
</dd>
</dl>
</dd></dl>
<dl class="method">
<dt id="G2DBinaryString.G2DBinaryString.getWidth">
<tt class="descname">getWidth</tt><big>(</big><big>)</big><a class="headerlink" href="#G2DBinaryString.G2DBinaryString.getWidth" title="Permalink to this definition">¶</a></dt>
<dd><p>Return the width (lines) of the List</p>
</dd></dl>
<dl class="attribute">
<dt id="G2DBinaryString.G2DBinaryString.initializator">
<tt class="descname">initializator</tt><a class="headerlink" href="#G2DBinaryString.G2DBinaryString.initializator" title="Permalink to this definition">¶</a></dt>
<dd><p>This is the initialization function of the genome, you
can change the default initializator using the function slot:</p>
<div class="highlight-python"><div class="highlight"><pre><span class="n">genome</span><span class="o">.</span><span class="n">initializator</span><span class="o">.</span><span class="n">set</span><span class="p">(</span><span class="n">Initializators</span><span class="o">.</span><span class="n">G2DBinaryStringInitializator</span><span class="p">)</span>
</pre></div>
</div>
<p>In this example, the initializator <a class="reference internal" href="module_initializators.html#Initializators.G1DBinaryStringInitializator" title="Initializators.G1DBinaryStringInitializator"><tt class="xref py py-func docutils literal"><span class="pre">Initializators.G1DBinaryStringInitializator()</span></tt></a>
will be used to create the initial population.</p>
</dd></dl>
<dl class="method">
<dt id="G2DBinaryString.G2DBinaryString.initialize">
<tt class="descname">initialize</tt><big>(</big><em>**args</em><big>)</big><a class="headerlink" href="#G2DBinaryString.G2DBinaryString.initialize" title="Permalink to this definition">¶</a></dt>
<dd><p>Called to initialize genome</p>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
<tbody valign="top">
<tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><strong>args</strong> – this parameters will be passed to the initializator</td>
</tr>
</tbody>
</table>
</dd></dl>
<dl class="method">
<dt id="G2DBinaryString.G2DBinaryString.mutate">
<tt class="descname">mutate</tt><big>(</big><em>**args</em><big>)</big><a class="headerlink" href="#G2DBinaryString.G2DBinaryString.mutate" title="Permalink to this definition">¶</a></dt>
<dd><p>Called to mutate the genome</p>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
<tbody valign="top">
<tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><strong>args</strong> – this parameters will be passed to the mutator</td>
</tr>
<tr class="field"><th class="field-name">Return type:</th><td class="field-body">the number of mutations returned by mutation operator</td>
</tr>
</tbody>
</table>
</dd></dl>
<dl class="attribute">
<dt id="G2DBinaryString.G2DBinaryString.mutator">
<tt class="descname">mutator</tt><a class="headerlink" href="#G2DBinaryString.G2DBinaryString.mutator" title="Permalink to this definition">¶</a></dt>
<dd><p>This is the mutator function slot, you can change the default
mutator using the slot <em>set</em> function:</p>
<div class="highlight-python"><div class="highlight"><pre><span class="n">genome</span><span class="o">.</span><span class="n">mutator</span><span class="o">.</span><span class="n">set</span><span class="p">(</span><span class="n">Mutators</span><span class="o">.</span><span class="n">G2DBinaryStringMutatorSwap</span><span class="p">)</span>
</pre></div>
</div>
</dd></dl>
<dl class="method">
<dt id="G2DBinaryString.G2DBinaryString.resetStats">
<tt class="descname">resetStats</tt><big>(</big><big>)</big><a class="headerlink" href="#G2DBinaryString.G2DBinaryString.resetStats" title="Permalink to this definition">¶</a></dt>
<dd><p>Clear score and fitness of genome</p>
</dd></dl>
<dl class="method">
<dt id="G2DBinaryString.G2DBinaryString.resumeString">
<tt class="descname">resumeString</tt><big>(</big><big>)</big><a class="headerlink" href="#G2DBinaryString.G2DBinaryString.resumeString" title="Permalink to this definition">¶</a></dt>
<dd><p>Returns a resumed string representation of the Genome</p>
</dd></dl>
<dl class="method">
<dt id="G2DBinaryString.G2DBinaryString.setItem">
<tt class="descname">setItem</tt><big>(</big><em>x</em>, <em>y</em>, <em>value</em><big>)</big><a class="headerlink" href="#G2DBinaryString.G2DBinaryString.setItem" title="Permalink to this definition">¶</a></dt>
<dd><p>Set the specified gene of List</p>
<dl class="docutils">
<dt>Example:</dt>
<dd><div class="first last highlight-python"><div class="highlight"><pre><span class="gp">>>> </span><span class="n">genome</span><span class="o">.</span><span class="n">setItem</span><span class="p">(</span><span class="mi">3</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span>
</pre></div>
</div>
</dd>
</dl>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
<tbody valign="top">
<tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
<li><strong>x</strong> – the x index, the column</li>
<li><strong>y</strong> – the y index, the row</li>
<li><strong>value</strong> – the value (integers 0 or 1)</li>
</ul>
</td>
</tr>
</tbody>
</table>
</dd></dl>
<dl class="method">
<dt id="G2DBinaryString.G2DBinaryString.setParams">
<tt class="descname">setParams</tt><big>(</big><em>**args</em><big>)</big><a class="headerlink" href="#G2DBinaryString.G2DBinaryString.setParams" title="Permalink to this definition">¶</a></dt>
<dd><p>Set the internal params</p>
<dl class="docutils">
<dt>Example:</dt>
<dd><div class="first last highlight-python"><div class="highlight"><pre><span class="gp">>>> </span><span class="n">genome</span><span class="o">.</span><span class="n">setParams</span><span class="p">(</span><span class="n">rangemin</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">rangemax</span><span class="o">=</span><span class="mi">100</span><span class="p">,</span> <span class="n">gauss_mu</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">gauss_sigma</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
</pre></div>
</div>
</dd>
</dl>
<div class="admonition note">
<p class="first admonition-title">Note</p>
<p class="last">All the individuals of the population shares this parameters and uses
the same instance of this dict.</p>
</div>
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<tbody valign="top">
<tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><strong>args</strong> – this params will saved in every chromosome for genetic op. use</td>
</tr>
</tbody>
</table>
</dd></dl>
</dd></dl>
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