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Package Scientific
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<h1 class="epydoc">Package Scientific</h1><p class="nomargin-top"></p>
<p>ScientificPython is a collection of Python modules that are useful for
scientific computing. In this collection you will find modules that cover
basic geometry (vectors, tensors, transformations, vector and tensor
fields), quaternions, automatic derivatives, (linear) interpolation,
polynomials, elementary statistics, nonlinear least-squares fits, unit
calculations, Fortran-compatible text formatting, 3D visualization via
VRML, and two Tk widgets for simple line plots and 3D wireframe models.
There are also interfaces to the netCDF library (portable structured
binary files), to MPI (Message Passing Interface, message-based parallel
programming), and to BSPlib (Bulk Synchronous Parallel programming). For
details consult the manual.</p>
<hr />
<div class="fields"> <p><strong>Version:</strong>
2.8
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<ul class="nomargin">
<li> <strong class="uidlink"><a href="Scientific.BSP-module.html">Scientific.BSP</a></strong>: <em class="summary">High-level parallelization constructs based on the Bulk Synchronous
Parallel (BSP) model.</em>
<ul>
<li> <strong class="uidlink"><a href="Scientific.BSP.Console-module.html">Scientific.BSP.Console</a></strong>: <em class="summary">Interactive console for parallel computing</em> </li>
<li> <strong class="uidlink"><a href="Scientific.BSP.IO-module.html">Scientific.BSP.IO</a></strong>: <em class="summary">Parallel acces to netCDF files</em> </li>
</ul>
</li>
<li> <strong class="uidlink"><a href="Scientific.Clustering-module.html">Scientific.Clustering</a></strong>
<ul>
<li> <strong class="uidlink"><a href="Scientific.Clustering.AffinityPropagation-module.html">Scientific.Clustering.AffinityPropagation</a></strong>: <em class="summary">Clustering by Affinity Propagation</em> </li>
</ul>
</li>
<li> <strong class="uidlink"><a href="Scientific.DictWithDefault-module.html">Scientific.DictWithDefault</a></strong>: <em class="summary">Dictionary with default values</em> </li>
<li> <strong class="uidlink"><a href="Scientific.DistributedComputing-module.html">Scientific.DistributedComputing</a></strong>
<ul>
<li> <strong class="uidlink"><a href="Scientific.DistributedComputing.MasterSlave-module.html">Scientific.DistributedComputing.MasterSlave</a></strong>: <em class="summary">Distributed computing using a master-slave model</em> </li>
<li> <strong class="uidlink"><a href="Scientific.DistributedComputing.TaskManager-module.html">Scientific.DistributedComputing.TaskManager</a></strong> </li>
</ul>
</li>
<li> <strong class="uidlink"><a href="Scientific.FFT-module.html">Scientific.FFT</a></strong> </li>
<li> <strong class="uidlink"><a href="Scientific.Functions-module.html">Scientific.Functions</a></strong>
<ul>
<li> <strong class="uidlink"><a href="Scientific.Functions.Derivatives-module.html">Scientific.Functions.Derivatives</a></strong>: <em class="summary">Automatic differentiation for functions of any number of variables
up to any order</em> </li>
<li> <strong class="uidlink"><a href="Scientific.Functions.FindRoot-module.html">Scientific.Functions.FindRoot</a></strong>: <em class="summary">Newton-Raphson for numerical root finding</em> </li>
<li> <strong class="uidlink"><a href="Scientific.Functions.FirstDerivatives-module.html">Scientific.Functions.FirstDerivatives</a></strong>: <em class="summary">Automatic differentiation for functions with any number of
variables</em> </li>
<li> <strong class="uidlink"><a href="Scientific.Functions.Interpolation-module.html">Scientific.Functions.Interpolation</a></strong>: <em class="summary">Interpolation of functions defined on a grid</em> </li>
<li> <strong class="uidlink"><a href="Scientific.Functions.LeastSquares-module.html">Scientific.Functions.LeastSquares</a></strong>: <em class="summary">Non-linear least squares fitting</em> </li>
<li> <strong class="uidlink"><a href="Scientific.Functions.Polynomial-module.html">Scientific.Functions.Polynomial</a></strong>: <em class="summary">Polynomials in any number of variables</em> </li>
<li> <strong class="uidlink"><a href="Scientific.Functions.Rational-module.html">Scientific.Functions.Rational</a></strong>: <em class="summary">Rational functions in one variable</em> </li>
<li> <strong class="uidlink"><a href="Scientific.Functions.Romberg-module.html">Scientific.Functions.Romberg</a></strong>: <em class="summary">Numerical integration using the Romberg algorithm</em> </li>
</ul>
</li>
<li> <strong class="uidlink"><a href="Scientific.Geometry-module.html">Scientific.Geometry</a></strong>: <em class="summary">Geometrical quantities and objects</em>
<ul>
<li> <strong class="uidlink"><a href="Scientific.Geometry.Objects3D-module.html">Scientific.Geometry.Objects3D</a></strong>: <em class="summary">Geometrical objects in 3D space</em> </li>
<li> <strong class="uidlink"><a href="Scientific.Geometry.Quaternion-module.html">Scientific.Geometry.Quaternion</a></strong>: <em class="summary">Quaternions as representations of rotations in 3D space</em> </li>
<li> <strong class="uidlink"><a href="Scientific.Geometry.TensorAnalysis-module.html">Scientific.Geometry.TensorAnalysis</a></strong>: <em class="summary">Vector and tensor fields with derivatives</em> </li>
<li> <strong class="uidlink"><a href="Scientific.Geometry.Transformation-module.html">Scientific.Geometry.Transformation</a></strong>: <em class="summary">Linear transformations in 3D space</em> </li>
</ul>
</li>
<li> <strong class="uidlink"><a href="Scientific.IO-module.html">Scientific.IO</a></strong>
<ul>
<li> <strong class="uidlink"><a href="Scientific.IO.ArrayIO-module.html">Scientific.IO.ArrayIO</a></strong>: <em class="summary">Basic support for I/O of one- and two-dimensional numerical arrays
to and from plain text files</em> </li>
<li> <strong class="uidlink"><a href="Scientific.IO.FortranFormat-module.html">Scientific.IO.FortranFormat</a></strong>: <em class="summary">Fortran-style formatted input/output</em> </li>
<li> <strong class="uidlink"><a href="Scientific.IO.NetCDF-module.html">Scientific.IO.NetCDF</a></strong>: <em class="summary">Python interface to the netCDF library</em> </li>
<li> <strong class="uidlink"><a href="Scientific.IO.PDB-module.html">Scientific.IO.PDB</a></strong>: <em class="summary">Parsing and writing of Protein Data Bank (PDB) files</em> </li>
<li> <strong class="uidlink"><a href="Scientific.IO.PDBSpaceGroups-module.html">Scientific.IO.PDBSpaceGroups</a></strong> </li>
<li> <strong class="uidlink"><a href="Scientific.IO.TextFile-module.html">Scientific.IO.TextFile</a></strong>: <em class="summary">Text files with line iteration and transparent compression</em> </li>
</ul>
</li>
<li> <strong class="uidlink"><a href="Scientific.MPI-module.html">Scientific.MPI</a></strong>: <em class="summary">Python interface to the Message Passing Interface (MPI)</em>
<ul>
<li> <strong class="uidlink"><a href="Scientific.MPI.IO-module.html">Scientific.MPI.IO</a></strong>: <em class="summary">I/O utilities for use with MPI programs</em> </li>
</ul>
</li>
<li> <strong class="uidlink"><a href="Scientific.NRNG-module.html">Scientific.NRNG</a></strong> </li>
<li> <strong class="uidlink"><a href="Scientific.NumberDict-module.html">Scientific.NumberDict</a></strong>: <em class="summary">Dictionary storing numerical values</em> </li>
<li> <strong class="uidlink"><a href="Scientific.Physics-module.html">Scientific.Physics</a></strong>
<ul>
<li> <strong class="uidlink"><a href="Scientific.Physics.PhysicalQuantities-module.html">Scientific.Physics.PhysicalQuantities</a></strong>: <em class="summary">Physical quantities with units.</em> </li>
<li> <strong class="uidlink"><a href="Scientific.Physics.Potential-module.html">Scientific.Physics.Potential</a></strong>: <em class="summary">Potential energy functions with automatic gradient evaluation</em> </li>
</ul>
</li>
<li> <strong class="uidlink"><a href="Scientific.QtWidgets-module.html">Scientific.QtWidgets</a></strong>
<ul>
<li> <strong class="uidlink"><a href="Scientific.QtWidgets.QtPlotCanvas-module.html">Scientific.QtWidgets.QtPlotCanvas</a></strong>: <em class="summary">Plot widget for Qt user interfaces</em> </li>
<li> <strong class="uidlink"><a href="Scientific.QtWidgets.QtVisualizationCanvas-module.html">Scientific.QtWidgets.QtVisualizationCanvas</a></strong>: <em class="summary">3D wireframe canvas widget for Qt</em> </li>
</ul>
</li>
<li> <strong class="uidlink"><a href="Scientific.Signals-module.html">Scientific.Signals</a></strong>
<ul>
<li> <strong class="uidlink"><a href="Scientific.Signals.Models-module.html">Scientific.Signals.Models</a></strong>: <em class="summary">Auto-regressive model for stochastic processes</em> </li>
</ul>
</li>
<li> <strong class="uidlink"><a href="Scientific.Statistics-module.html">Scientific.Statistics</a></strong>: <em class="summary">Basic monovariate statistics</em>
<ul>
<li> <strong class="uidlink"><a href="Scientific.Statistics.Histogram-module.html">Scientific.Statistics.Histogram</a></strong>: <em class="summary">Standard and weighted histograms</em> </li>
</ul>
</li>
<li> <strong class="uidlink"><a href="Scientific.Threading-module.html">Scientific.Threading</a></strong>
<ul>
<li> <strong class="uidlink"><a href="Scientific.Threading.TaskManager-module.html">Scientific.Threading.TaskManager</a></strong>: <em class="summary">Parallel task manager for shared-memory multiprocessor machines</em> </li>
</ul>
</li>
<li> <strong class="uidlink"><a href="Scientific.TkWidgets-module.html">Scientific.TkWidgets</a></strong>
<ul>
<li> <strong class="uidlink"><a href="Scientific.TkWidgets.TkPlotCanvas-module.html">Scientific.TkWidgets.TkPlotCanvas</a></strong>: <em class="summary">Plot widget for Tk user interfaces</em> </li>
<li> <strong class="uidlink"><a href="Scientific.TkWidgets.TkVisualizationCanvas-module.html">Scientific.TkWidgets.TkVisualizationCanvas</a></strong>: <em class="summary">3D wireframe canvas widget for Tk</em> </li>
</ul>
</li>
<li> <strong class="uidlink"><a href="Scientific.Visualization-module.html">Scientific.Visualization</a></strong>: <em class="summary">Scientific visualization</em>
<ul>
<li> <strong class="uidlink"><a href="Scientific.Visualization.Color-module.html">Scientific.Visualization.Color</a></strong>: <em class="summary">Color definitions for use in the modules VRML, VRML2, VMD, and
PyMOL.</em> </li>
<li> <strong class="uidlink"><a href="Scientific.Visualization.PyMOL-module.html">Scientific.Visualization.PyMOL</a></strong>: <em class="summary">Definitions of simple 3D graphics objects and scenes containing
them, in a form that can be fed to the molecular visualization
program PyMOL</em> </li>
<li> <strong class="uidlink"><a href="Scientific.Visualization.VMD-module.html">Scientific.Visualization.VMD</a></strong>: <em class="summary">Definitions of simple 3D graphics objects and scenes containing
them, in a form that can be fed to the molecular visualization
program VMD</em> </li>
<li> <strong class="uidlink"><a href="Scientific.Visualization.VPython-module.html">Scientific.Visualization.VPython</a></strong>: <em class="summary">Definitions of simple 3D graphics objects and scenes containing
them, to be rendered using VPython</em> </li>
<li> <strong class="uidlink"><a href="Scientific.Visualization.VRML-module.html">Scientific.Visualization.VRML</a></strong>: <em class="summary">Definitions of simple 3D graphics objects and VRML scenes
containing them</em> </li>
<li> <strong class="uidlink"><a href="Scientific.Visualization.VRML2-module.html">Scientific.Visualization.VRML2</a></strong>: <em class="summary">Definitions of simple 3D graphics objects and VRML scenes
containing them</em> </li>
</ul>
</li>
<li> <strong class="uidlink"><a href="Scientific.indexing-module.html">Scientific.indexing</a></strong>: <em class="summary">Array indexing utility</em> </li>
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