/usr/lib/emboss/include/ajdan.h is in emboss-lib 6.3.1-6ubuntu3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 | #ifdef __cplusplus
extern "C"
{
#endif
#ifndef ajdan_h
#define ajdan_h
#include "ajax.h"
/* @data AjPMelt **************************************************************
**
** Melting values for di-nucleotides
**
** @alias AjSMelt
** @alias AjOMelt
**
** @attr pair [AjPStr] Di-nucleotide
** @attr enthalpy [float] Enthalpy
** @attr entropy [float] Entropy
** @attr energy [float] Free energy
** @attr Padding [char[4]] Padding
**
*/
typedef struct AjSMelt
{
AjPStr pair;
float enthalpy;
float entropy;
float energy;
char Padding[4];
} AjOMelt;
#define AjPMelt AjOMelt*
/*
** Prototype definitions
*/
void ajMeltExit(void);
void ajMeltInit(AjBool isdna, ajint savesize);
float ajMeltEnergy(const AjPStr strand, ajint len,
ajint shift, AjBool isDNA,
AjBool maySave, float *enthalpy, float *entropy);
float ajMeltEnergy2(const char *strand, ajint pos, ajint len,
AjBool isDNA,
float *enthalpy, float *entropy,
float **saveentr, float **saveenth, float **saveener);
float ajMeltTemp(const AjPStr strand, ajint len, ajint shift, float saltconc,
float DNAconc, AjBool isDNA);
float ajMeltTempSave(const char *strand, ajint pos, ajint len, float saltconc,
float DNAconc, AjBool isDNA,
float **saveentr, float **saveenth, float **saveener);
float ajMeltGC(const AjPStr strand, ajint len);
float ajMeltTempProd(float gc, float saltconc, ajint len);
float ajAnneal(float tmprimer, float tmproduct);
/*
** End of prototype definitions
*/
__deprecated float ajTm(const AjPStr strand, ajint len,
ajint shift, float saltconc,
float DNAconc, AjBool isDNA);
__deprecated float ajTm2(const char *strand, ajint pos,
ajint len, float saltconc,
float DNAconc, AjBool isDNA,
float **saveentr, float **saveenth, float **saveener);
__deprecated float ajProdTm(float gc, float saltconc, ajint len);
#endif
#ifdef __cplusplus
}
#endif
|