/usr/lib/emboss/include/ensassembly.h is in emboss-lib 6.3.1-6ubuntu3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 | #ifdef __cplusplus
extern "C"
{
#endif
#ifndef ensassembly_h
#define ensassembly_h
#include "ajax.h"
/* @data EnsPAssembly *********************************************************
**
** Ensembl Assembly.
** An Ensembl Assembly object encapsulates assembly information how an
** assembled Ensembl Sequence Region is assembled from a particular
** component Ensembl Sequence Region.
**
** @alias EnsSAssembly
** @alias EnsOAssembly
**
** @attr Use [ajuint] Use counter
** @attr AssembledSeqregionId [ajuint] Assembled Ensembl Sequence Region
** identifier
** @attr AssembledStart [ajuint] Assembled Ensembl Sequence Region
** start coordinate
** @attr AssembledEnd [ajuint] Assembled Ensembl Sequence Region
** end coordinate
** @attr ComponentSeqregionId [ajuint] Component Ensembl Sequence Region
** identifier
** @attr ComponentStart [ajuint] Component Ensembl Sequence Region
** start coordinate
** @attr ComponentEnd [ajuint] Component Ensembl Sequence Region
** end coordinate
** @attr Orientation [ajint] Relative orientation
** @@
******************************************************************************/
typedef struct EnsSAssembly
{
ajuint Use;
ajuint AssembledSeqregionId;
ajuint AssembledStart;
ajuint AssembledEnd;
ajuint ComponentSeqregionId;
ajuint ComponentStart;
ajuint ComponentEnd;
ajint Orientation;
} EnsOAssembly;
#define EnsPAssembly EnsOAssembly*
/*
** Prototype definitions
*/
/* Ensembl Assembly */
EnsPAssembly ensAssemblyNew(ajuint asmsrid,
ajuint asmstart,
ajuint asmend,
ajuint cmpsrid,
ajuint cmpstart,
ajuint cmpend,
ajint orientation);
EnsPAssembly ensAssemblyNewObj(const EnsPAssembly object);
EnsPAssembly ensAssemblyNewRef(EnsPAssembly assembly);
void ensAssemblyDel(EnsPAssembly* Passembly);
ajuint ensAssemblyGetAssembledSeqregionId(const EnsPAssembly assembly);
ajuint ensAssemblyGetAssembledStart(const EnsPAssembly assembly);
ajuint ensAssemblyGetAssembledEnd(const EnsPAssembly assembly);
ajuint ensAssemblyGetComponentSeqregionId(const EnsPAssembly assembly);
ajuint ensAssemblyGetComponentStart(const EnsPAssembly assembly);
ajuint ensAssemblyGetComponentEnd(const EnsPAssembly assembly);
ajint ensAssemblyGetOrientation(const EnsPAssembly assembly);
AjBool ensAssemblyTrace(const EnsPAssembly assembly, ajuint level);
ajulong ensAssemblyGetMemsize(const EnsPAssembly assembly);
/*
** End of prototype definitions
*/
#endif /* ensassembly_h */
#ifdef __cplusplus
}
#endif
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