/usr/lib/emboss/include/ensregistry.h is in emboss-lib 6.3.1-6ubuntu3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 | #ifdef __cplusplus
extern "C"
{
#endif
#ifndef ensregistry_h
#define ensregistry_h
#include "ajax.h"
#include "ensdatabaseadaptor.h"
#include "ensanalysis.h"
#include "ensassemblyexception.h"
#include "ensassemblymapper.h"
#include "enscoordsystem.h"
#include "ensdatabaseentry.h"
#include "ensdensity.h"
#include "ensditag.h"
#include "ensexon.h"
#include "ensexternaldatabase.h"
#include "ensgene.h"
#include "ensgvdata.h"
#include "ensgvsample.h"
#include "ensgvindividual.h"
#include "ensgvpopulation.h"
#include "enskaryotype.h"
#include "ensmarker.h"
#include "ensmetacoordinate.h"
#include "ensmetainformation.h"
#include "ensmiscellaneous.h"
#include "ensprediction.h"
#include "ensqc.h"
#include "ensrepeat.h"
#include "enssequence.h"
#include "ensseqregion.h"
#include "ensslice.h"
#include "enstranscript.h"
#include "enstranslation.h"
#include "ensvariation.h"
/*
** Prototype definitions
*/
/* Ensembl Registry */
void ensRegistryInit(void);
void ensRegistryClear(void);
void ensRegistryExit(void);
/* Ensembl Registry Alias */
AjBool ensRegistryAddAlias(const AjPStr species, const AjPStr alias);
AjBool ensRegistryRemoveAlias(const AjPStr alias);
AjPStr ensRegistryGetSpecies(const AjPStr alias);
AjBool ensRegistryLoadAliasesFromFile(const AjPStr filename);
AjBool ensRegistryTraceAliases(ajuint level);
AjBool ensRegistryTraceEntries(ajuint level);
/* Ensembl Registry Database Adaptor */
AjBool ensRegistryAddDatabaseadaptor(EnsPDatabaseadaptor dba);
AjBool ensRegistryAddReferenceadaptor(EnsPDatabaseadaptor dba,
EnsPDatabaseadaptor rsa);
AjBool ensRegistryAddStableidentifierprefix(EnsPDatabaseadaptor dba,
const AjPStr prefix);
EnsPDatabaseadaptor ensRegistryNewDatabaseadaptor(
EnsPDatabaseconnection dbc,
AjPStr database,
AjPStr alias,
EnsEDatabaseadaptorGroup group,
AjBool multi,
ajuint identifier);
EnsPDatabaseadaptor ensRegistryNewReferenceadaptor(
EnsPDatabaseadaptor dba,
EnsPDatabaseconnection dbc,
AjPStr database,
AjPStr alias,
EnsEDatabaseadaptorGroup group,
AjBool multi,
ajuint identifier);
AjBool ensRegistryRemoveDatabaseadaptor(EnsPDatabaseadaptor *Pdba);
AjBool ensRegistryGetAllDatabaseadaptors(EnsEDatabaseadaptorGroup group,
const AjPStr alias,
AjPList dbas);
AjPStr ensRegistryGetStableidentifierprefix(EnsPDatabaseadaptor dba);
AjBool ensRegistryLoadFromServer(EnsPDatabaseconnection dbc);
AjBool ensRegistryLoadIdentifiers(void);
AjBool ensRegistryGetSpeciesGroup(const AjPStr identifier,
AjPStr *Pspecies,
EnsEDatabaseadaptorGroup *Pgroup);
/*
** End of prototype definitions
*/
#endif /* ensregistry_h */
#ifdef __cplusplus
}
#endif
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