/usr/include/BALL/QSAR/oplsModel.h is in libball1.4-dev 1.4.1+20111206-3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 | /* oplsModel.h
*
* Copyright (C) 2009 Marcel Schumann
*
* This file is part of QuEasy -- A Toolbox for Automated QSAR Model
* Construction and Validation.
* QuEasy is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 3 of the License, or (at
* your option) any later version.
*
* QuEasy is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
* General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program; if not, see <http://www.gnu.org/licenses/>.
*/
// -*- Mode: C++; tab-width: 2; -*-
// vi: set ts=2:
//
//
#ifndef OPLSMODEL
#define OPLSMODEL
#ifndef PLSMODEL
#include <BALL/QSAR/plsModel.h>
#endif
namespace BALL
{
namespace QSAR
{
class BALL_EXPORT OPLSModel : public PLSModel
{
public:
/** @name Constructors and Destructors
*/
//@{
OPLSModel(const QSARData& q);
~OPLSModel();
//@}
/** @name Accessors
*/
//@{Constructors and Destructors
/** Starts orthogonal partial least squares regression. \n
In order to find the optimal number of latente variables for the current data of this model, run findNoLatenteVariables() first. */
void train();
const Matrix<double>* getWOrtho();
const Matrix<double>* getTOrtho();
int getNoOrthoComponents();
void setNoOrthoComponents(int d);
bool optimizeParameters(int k, int no_steps);
//RowVector predict(const vector<double>& substance, bool transform);
void setParameters(vector<double>& v);
vector<double> getParameters() const;
//@}
private:
/** @name Attributes
*/
//@{
Matrix<double> T_ortho_;
Matrix<double> W_ortho_;
int no_ortho_components_;
//@}
};
}
}
#endif // OPLSMODEL
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