libbpp-phyl-dev 2.0.3-1 / usr

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/usr/ is in libbpp-phyl-dev 2.0.3-1.

This file is owned by root:root, with mode 0o755.

File Mime Type Owner Mode Size
..
/usr/share/ root:root 0o755
/usr/share/doc/ root:root 0o755
/usr/share/doc/libbpp-phyl-dev/ root:root 0o755
/usr/share/doc/libbpp-phyl-dev/copyright text/plain root:root 0o644 2.9 KB
/usr/include/ root:root 0o755
/usr/include/Bpp/ root:root 0o755
/usr/include/Bpp/Phyl/ root:root 0o755
/usr/include/Bpp/Phyl/Io.all text/x-c root:root 0o644 280 bytes
/usr/include/Bpp/Phyl/TreeTools.h text/x-c root:root 0o644 26.9 KB
/usr/include/Bpp/Phyl/Tree.h text/x-c root:root 0o644 15.0 KB
/usr/include/Bpp/Phyl/PatternTools.h text/x-c root:root 0o644 3.7 KB
/usr/include/Bpp/Phyl/Graphics.all text/x-c root:root 0o644 285 bytes
/usr/include/Bpp/Phyl/Graphics/ root:root 0o755
/usr/include/Bpp/Phyl/Model.all text/x-c root:root 0o644 2.3 KB
/usr/include/Bpp/Phyl/OptimizationTools.h text/x-c++ root:root 0o644 32.7 KB
/usr/include/Bpp/Phyl/TreeExceptions.h text/x-c++ root:root 0o644 7.5 KB
/usr/include/Bpp/Phyl/Model/ root:root 0o755
/usr/include/Bpp/Phyl/Model/RN95.h text/x-c root:root 0o644 5.8 KB
/usr/include/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h text/x-c root:root 0o644 6.7 KB
/usr/include/Bpp/Phyl/Model/NucleotideSubstitutionModel.h text/x-c root:root 0o644 2.3 KB
/usr/include/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h text/x-c++ root:root 0o644 5.6 KB
/usr/include/Bpp/Phyl/Model/T92.h text/x-c++ root:root 0o644 7.7 KB
/usr/include/Bpp/Phyl/Model/RE08.h text/x-c root:root 0o644 7.7 KB
/usr/include/Bpp/Phyl/Model/BinarySubstitutionModel.h text/x-c++ root:root 0o644 4.9 KB
/usr/include/Bpp/Phyl/Model/K80.h text/x-c root:root 0o644 7.9 KB
/usr/include/Bpp/Phyl/Model/LG08.h text/x-c root:root 0o644 4.8 KB
/usr/include/Bpp/Phyl/Model/LLG08_EHO.h text/x-c++ root:root 0o644 4.1 KB
/usr/include/Bpp/Phyl/Model/AbstractCodonPhaseFrequenciesSubstitutionModel.h text/x-c root:root 0o644 4.4 KB
/usr/include/Bpp/Phyl/Model/RN95s.h text/x-c root:root 0o644 4.7 KB
/usr/include/Bpp/Phyl/Model/LLG08_UL2.h text/x-c++ root:root 0o644 3.9 KB
/usr/include/Bpp/Phyl/Model/WAG01.h text/x-c root:root 0o644 5.0 KB
/usr/include/Bpp/Phyl/Model/RateDistributionFactory.h text/x-c++ root:root 0o644 4.0 KB
/usr/include/Bpp/Phyl/Model/AbstractCodonDistanceSubstitutionModel.h text/x-c++ root:root 0o644 4.2 KB
/usr/include/Bpp/Phyl/Model/MixedSubstitutionModel.h text/x-c root:root 0o644 4.0 KB
/usr/include/Bpp/Phyl/Model/DSO78.h text/x-c root:root 0o644 4.9 KB
/usr/include/Bpp/Phyl/Model/SubstitutionModelFactory.h text/x-c root:root 0o644 3.9 KB
/usr/include/Bpp/Phyl/Model/JCnuc.h text/x-c++ root:root 0o644 5.8 KB
/usr/include/Bpp/Phyl/Model/TN93.h text/x-c root:root 0o644 6.2 KB
/usr/include/Bpp/Phyl/Model/YNGKP_M2.h text/x-c++ root:root 0o644 3.7 KB
/usr/include/Bpp/Phyl/Model/MixedSubstitutionModelSet.h text/x-c root:root 0o644 11.3 KB
/usr/include/Bpp/Phyl/Model/FrequenciesSet.h text/x-c++ root:root 0o644 26.7 KB
/usr/include/Bpp/Phyl/Model/CodonRateSubstitutionModel.h text/x-c++ root:root 0o644 3.7 KB
/usr/include/Bpp/Phyl/Model/CodonSubstitutionModel.h text/x-c root:root 0o644 2.6 KB
/usr/include/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h text/x-c++ root:root 0o644 4.6 KB
/usr/include/Bpp/Phyl/Model/GY94.h text/x-c++ root:root 0o644 3.8 KB
/usr/include/Bpp/Phyl/Model/YNGKP_M3.h text/x-c++ root:root 0o644 3.7 KB
/usr/include/Bpp/Phyl/Model/WordSubstitutionModel.h text/x-c++ root:root 0o644 4.4 KB
/usr/include/Bpp/Phyl/Model/G2001.h text/x-c root:root 0o644 5.7 KB
/usr/include/Bpp/Phyl/Model/SubstitutionModel.h text/x-c++ root:root 0o644 13.0 KB
/usr/include/Bpp/Phyl/Model/SubstitutionModelSetTools.h text/x-c root:root 0o644 3.5 KB
/usr/include/Bpp/Phyl/Model/YN98.h text/x-c++ root:root 0o644 4.1 KB
/usr/include/Bpp/Phyl/Model/CodonDistancePhaseFrequenciesSubstitutionModel.h text/x-c++ root:root 0o644 6.7 KB
/usr/include/Bpp/Phyl/Model/ProteinSubstitutionModel.h text/x-c root:root 0o644 2.3 KB
/usr/include/Bpp/Phyl/Model/YNGKP_M7.h text/x-c++ root:root 0o644 3.5 KB
/usr/include/Bpp/Phyl/Model/UserProteinSubstitutionModel.h text/x-c root:root 0o644 5.4 KB
/usr/include/Bpp/Phyl/Model/YNGKP_M8.h text/x-c++ root:root 0o644 3.7 KB
/usr/include/Bpp/Phyl/Model/GTR.h text/x-c root:root 0o644 5.9 KB
/usr/include/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h text/x-c root:root 0o644 10.3 KB
/usr/include/Bpp/Phyl/Model/AbstractCodonFrequenciesSubstitutionModel.h text/x-c root:root 0o644 4.0 KB
/usr/include/Bpp/Phyl/Model/SubstitutionModelSet.h text/x-c++ root:root 0o644 21.9 KB
/usr/include/Bpp/Phyl/Model/F84.h text/x-c root:root 0o644 9.2 KB
/usr/include/Bpp/Phyl/Model/LLG08_EX2.h text/x-c++ root:root 0o644 3.9 KB
/usr/include/Bpp/Phyl/Model/CodonDistanceSubstitutionModel.h text/x-c root:root 0o644 5.5 KB
/usr/include/Bpp/Phyl/Model/CodonRateFrequenciesSubstitutionModel.h text/x-c++ root:root 0o644 4.6 KB
/usr/include/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h text/x-c root:root 0o644 6.4 KB
/usr/include/Bpp/Phyl/Model/JCprot.h text/x-c root:root 0o644 8.0 KB
/usr/include/Bpp/Phyl/Model/SSR.h text/x-c++ root:root 0o644 4.3 KB
/usr/include/Bpp/Phyl/Model/LLG08_UL3.h text/x-c++ root:root 0o644 4.1 KB
/usr/include/Bpp/Phyl/Model/TripletSubstitutionModel.h text/x-c++ root:root 0o644 3.7 KB
/usr/include/Bpp/Phyl/Model/HKY85.h text/x-c root:root 0o644 9.0 KB
/usr/include/Bpp/Phyl/Model/TS98.h text/x-c root:root 0o644 4.2 KB
/usr/include/Bpp/Phyl/Model/YpR.h text/x-c++ root:root 0o644 7.0 KB
/usr/include/Bpp/Phyl/Model/CodonDistanceFrequenciesSubstitutionModel.h text/x-c++ root:root 0o644 6.6 KB
/usr/include/Bpp/Phyl/Model/MG94.h text/x-c++ root:root 0o644 3.5 KB
/usr/include/Bpp/Phyl/Model/L95.h text/x-c++ root:root 0o644 4.2 KB
/usr/include/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.h text/x-c++ root:root 0o644 6.3 KB
/usr/include/Bpp/Phyl/Model/JTT92.h text/x-c root:root 0o644 4.9 KB
/usr/include/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h text/x-c++ root:root 0o644 5.2 KB
/usr/include/Bpp/Phyl/Model/YNGKP_M1.h text/x-c++ root:root 0o644 3.9 KB
/usr/include/Bpp/Phyl/Model/AbstractSubstitutionModel.h text/x-c++ root:root 0o644 13.3 KB
/usr/include/Bpp/Phyl/Model/LLG08_EX3.h text/x-c++ root:root 0o644 4.2 KB
/usr/include/Bpp/Phyl/Model/AbstractCodonSubstitutionModel.h text/x-c++ root:root 0o644 5.8 KB
/usr/include/Bpp/Phyl/App.all text/x-c root:root 0o644 47 bytes
/usr/include/Bpp/Phyl/Distance.all text/x-c root:root 0o644 287 bytes
/usr/include/Bpp/Phyl/BipartitionList.h text/x-c root:root 0o644 8.1 KB
/usr/include/Bpp/Phyl/Mapping.all text/x-c root:root 0o644 501 bytes
/usr/include/Bpp/Phyl/TopologySearch.h text/x-c root:root 0o644 4.1 KB
/usr/include/Bpp/Phyl/Likelihood/ root:root 0o755
/usr/include/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h text/x-c root:root 0o644 12.1 KB
/usr/include/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h text/x-c root:root 0o644 6.3 KB
/usr/include/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h text/x-c++ root:root 0o644 10.0 KB
/usr/include/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h text/x-c root:root 0o644 9.6 KB
/usr/include/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h text/x-c++ root:root 0o644 7.6 KB
/usr/include/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h text/x-c root:root 0o644 4.5 KB
/usr/include/Bpp/Phyl/Likelihood/TreeLikelihoodData.h text/x-c root:root 0o644 4.3 KB
/usr/include/Bpp/Phyl/Likelihood/HomogeneousTreeLikelihood.h text/x-c root:root 0o644 3.4 KB
/usr/include/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h text/x-c root:root 0o644 10.8 KB
/usr/include/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h text/x-c root:root 0o644 4.8 KB
/usr/include/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h text/x-c root:root 0o644 4.0 KB
/usr/include/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.h text/x-c++ root:root 0o644 6.1 KB
/usr/include/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.h text/x-c root:root 0o644 4.2 KB
/usr/include/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h text/x-c root:root 0o644 11.0 KB
/usr/include/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h text/x-c root:root 0o644 10.1 KB
/usr/include/Bpp/Phyl/Likelihood/SitePartitionTreeLikelihood.h text/x-c root:root 0o644 3.3 KB
/usr/include/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h text/x-c root:root 0o644 8.4 KB
/usr/include/Bpp/Phyl/Likelihood/DRTreeLikelihood.h text/x-c root:root 0o644 3.9 KB
/usr/include/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h text/x-c root:root 0o644 7.4 KB
/usr/include/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h text/x-c root:root 0o644 14.4 KB
/usr/include/Bpp/Phyl/Likelihood/RASTools.h text/x-c root:root 0o644 2.5 KB
/usr/include/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h text/x-c root:root 0o644 7.1 KB
/usr/include/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h text/x-c root:root 0o644 12.5 KB
/usr/include/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h text/x-c++ root:root 0o644 8.5 KB
/usr/include/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h text/x-c root:root 0o644 5.0 KB
/usr/include/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h text/x-c root:root 0o644 3.2 KB
/usr/include/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h text/x-c root:root 0o644 4.5 KB
/usr/include/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h text/x-c++ root:root 0o644 7.3 KB
/usr/include/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h text/x-c root:root 0o644 11.4 KB
/usr/include/Bpp/Phyl/Likelihood/TreeLikelihood.h text/x-c root:root 0o644 13.5 KB
/usr/include/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h text/x-c root:root 0o644 2.8 KB
/usr/include/Bpp/Phyl/App/ root:root 0o755
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/usr/include/Bpp/Phyl/Mapping/IndexToCount.h text/x-c root:root 0o644 3.5 KB
/usr/include/Bpp/Phyl/Mapping/SubstitutionMappingTools.h text/x-c root:root 0o644 10.2 KB
/usr/include/Bpp/Phyl/Mapping/SubstitutionCount.h text/x-c root:root 0o644 6.1 KB
/usr/include/Bpp/Phyl/Mapping/SubstitutionRegister.h text/x-c root:root 0o644 14.7 KB
/usr/include/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h text/x-c root:root 0o644 3.7 KB
/usr/include/Bpp/Phyl/Mapping/SubstitutionMapping.h text/x-c root:root 0o644 8.0 KB
/usr/include/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h text/x-c root:root 0o644 4.5 KB
/usr/include/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h text/x-c root:root 0o644 4.0 KB
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/usr/include/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h text/x-c root:root 0o644 6.5 KB
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/usr/include/Bpp/Phyl/Parsimony/AbstractTreeParsimonyData.h text/x-c root:root 0o644 3.8 KB
/usr/include/Bpp/Phyl/Parsimony/DRTreeParsimonyData.h text/x-c root:root 0o644 9.4 KB
/usr/include/Bpp/Phyl/Parsimony/TreeParsimonyData.h text/x-c root:root 0o644 3.4 KB
/usr/include/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h text/x-c root:root 0o644 6.0 KB
/usr/include/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h text/x-c root:root 0o644 3.3 KB
/usr/include/Bpp/Phyl/Simulation/ root:root 0o755
/usr/include/Bpp/Phyl/Simulation/SequenceSimulationTools.h text/x-c root:root 0o644 3.6 KB
/usr/include/Bpp/Phyl/Simulation/SiteSimulator.h text/x-c root:root 0o644 2.4 KB
/usr/include/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h text/x-c root:root 0o644 9.9 KB
/usr/include/Bpp/Phyl/Simulation/SequenceSimulator.h text/x-c root:root 0o644 2.3 KB
/usr/include/Bpp/Phyl/Simulation/DetailedSiteSimulator.h text/x-c root:root 0o644 7.8 KB
/usr/include/Bpp/Phyl/Simulation/HomogeneousSequenceSimulator.h text/x-c root:root 0o644 2.5 KB
/usr/include/Bpp/Phyl/Simulation/MutationProcess.h text/x-c root:root 0o644 12.1 KB
/usr/include/Bpp/Phyl/TreeTemplate.h text/x-c++ root:root 0o644 20.2 KB
/usr/include/Bpp/Phyl/Simulation.all text/x-c root:root 0o644 323 bytes
/usr/include/Bpp/Phyl/AncestralStateReconstruction.h text/x-c root:root 0o644 3.6 KB
/usr/include/Bpp/Phyl/Parsimony.all text/x-c root:root 0o644 269 bytes
/usr/include/Bpp/Phyl/Distance/ root:root 0o755
/usr/include/Bpp/Phyl/Distance/PGMA.h text/x-c root:root 0o644 3.5 KB
/usr/include/Bpp/Phyl/Distance/HierarchicalClustering.h text/x-c root:root 0o644 3.7 KB
/usr/include/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h text/x-c root:root 0o644 7.4 KB
/usr/include/Bpp/Phyl/Distance/BioNJ.h text/x-c++ root:root 0o644 2.9 KB
/usr/include/Bpp/Phyl/Distance/NeighborJoining.h text/x-c root:root 0o644 3.2 KB
/usr/include/Bpp/Phyl/Distance/AgglomerativeDistanceMethod.h text/x-c++ root:root 0o644 2.5 KB
/usr/include/Bpp/Phyl/Distance/DistanceEstimation.h text/x-c root:root 0o644 16.8 KB
/usr/include/Bpp/Phyl/NodeTemplate.h text/x-c root:root 0o644 6.3 KB
/usr/include/Bpp/Phyl/Graphics/AbstractTreeDrawing.h text/x-c root:root 0o644 12.4 KB
/usr/include/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.h text/x-c root:root 0o644 6.7 KB
/usr/include/Bpp/Phyl/Graphics/TreeDrawing.h text/x-c++ root:root 0o644 11.6 KB
/usr/include/Bpp/Phyl/Graphics/CladogramPlot.h text/x-c root:root 0o644 3.3 KB
/usr/include/Bpp/Phyl/Graphics/PhylogramPlot.h text/x-c root:root 0o644 3.3 KB
/usr/include/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h text/x-c root:root 0o644 3.2 KB
/usr/include/Bpp/Phyl/Graphics/TreeDrawingListener.h text/x-c++ root:root 0o644 8.7 KB
/usr/include/Bpp/Phyl/PhyloStatistics.h text/x-c root:root 0o644 3.7 KB
/usr/include/Bpp/Phyl/BipartitionTools.h text/x-c root:root 0o644 5.9 KB
/usr/include/Bpp/Phyl/TreeTemplateTools.h text/x-c root:root 0o644 40.2 KB
/usr/include/Bpp/Phyl/SitePatterns.h text/x-c root:root 0o644 5.4 KB
/usr/include/Bpp/Phyl/NNITopologySearch.h text/x-c root:root 0o644 5.5 KB
/usr/include/Bpp/Phyl/Io/ root:root 0o755
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/usr/include/Bpp/Phyl/Io/IoPairedSiteLikelihoods.h text/x-c++ root:root 0o644 4.2 KB
/usr/include/Bpp/Phyl/Io/IoTree.h text/x-c root:root 0o644 7.2 KB
/usr/include/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h text/x-c root:root 0o644 3.0 KB
/usr/include/Bpp/Phyl/Io/Newick.h text/x-c root:root 0o644 5.9 KB
/usr/include/Bpp/Phyl/Io/Nhx.h text/x-c root:root 0o644 8.4 KB
/usr/include/Bpp/Phyl/Io/NexusIoTree.h text/x-c root:root 0o644 4.5 KB
/usr/include/Bpp/Phyl/Io/IoTreeFactory.h text/x-c++ root:root 0o644 3.0 KB
/usr/include/Bpp/Phyl/Likelihood.all text/x-c root:root 0o644 1.6 KB
/usr/include/Bpp/Phyl/Node.h text/x-c++ root:root 0o644 18.9 KB
/usr/include/Bpp/Phyl/NNISearchable.h text/x-c root:root 0o644 4.4 KB
/usr/lib/ root:root 0o755
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/usr/share/doc/libbpp-phyl-dev/changelog.Debian.gz root:root 0o777
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