/usr/include/dolfin/la/GenericVector.h is in libdolfin1.0-dev 1.0.0-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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//
// This file is part of DOLFIN.
//
// DOLFIN is free software: you can redistribute it and/or modify
// it under the terms of the GNU Lesser General Public License as published by
// the Free Software Foundation, either version 3 of the License, or
// (at your option) any later version.
//
// DOLFIN is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
// GNU Lesser General Public License for more details.
//
// You should have received a copy of the GNU Lesser General Public License
// along with DOLFIN. If not, see <http://www.gnu.org/licenses/>.
//
// Modified by Anders Logg 2006-2011
// Modified by Kent-Andre Mardal 2008
// Modified by Ola Skavhaug 2008
// Modified by Martin Sandve Alnes 2009
// Modified by Johan Hake 2009-2010
//
// First added: 2006-04-25
// Last changed: 2011-11-11
#ifndef __GENERIC_VECTOR_H
#define __GENERIC_VECTOR_H
#include <algorithm>
#include <utility>
#include <vector>
#include <dolfin/log/log.h>
#include "GenericSparsityPattern.h"
#include "GenericTensor.h"
namespace dolfin
{
template<typename T> class Array;
/// This class defines a common interface for vectors.
class GenericVector : public GenericTensor
{
public:
/// Destructor
virtual ~GenericVector() {}
//--- Implementation of the GenericTensor interface ---
/// Resize tensor with given dimensions
virtual void resize(uint rank, const uint* dims)
{ dolfin_assert(rank == 1); resize(dims[0]); }
/// Initialize zero tensor using sparsity pattern
virtual void init(const GenericSparsityPattern& sparsity_pattern)
{ resize(sparsity_pattern.local_range(0)); zero(); }
/// Return copy of tensor
virtual GenericVector* copy() const = 0;
/// Return tensor rank (number of dimensions)
virtual uint rank() const
{ return 1; }
/// Return size of given dimension
virtual uint size(uint dim) const
{ dolfin_assert(dim == 0); return size(); }
/// Return local ownership range
virtual std::pair<uint, uint> local_range(uint dim) const
{ dolfin_assert(dim == 0); return local_range(); }
/// Get block of values
virtual void get(double* block, const uint* num_rows,
const uint * const * rows) const
{ get_local(block, num_rows[0], rows[0]); }
/// Set block of values
virtual void set(const double* block, const uint* num_rows,
const uint * const * rows)
{ set(block, num_rows[0], rows[0]); }
/// Add block of values
virtual void add(const double* block, const uint* num_rows,
const uint * const * rows)
{ add(block, num_rows[0], rows[0]); }
/// Add block of values
virtual void add(const double* block, const std::vector<const std::vector<uint>* >& rows)
{ add(block, rows[0]->size(), &(*rows[0])[0]); }
/// Add block of values
virtual void add(const double* block, const std::vector<std::vector<uint> >& rows)
{ add(block, rows[0].size(), &(rows[0])[0]); }
/// Set all entries to zero and keep any sparse structure
virtual void zero() = 0;
/// Finalize assembly of tensor
virtual void apply(std::string mode) = 0;
/// Return informal string representation (pretty-print)
virtual std::string str(bool verbose) const = 0;
//--- Vector interface ---
/// Resize vector to global size N
virtual void resize(uint N) = 0;
/// Resize vector with given ownership range
virtual void resize(std::pair<uint, uint> range) = 0;
/// Resize vector with given ownership range and with ghost values
virtual void resize(std::pair<uint, uint> range,
const std::vector<uint>& ghost_indices) = 0;
/// Return global size of vector
virtual uint size() const = 0;
/// Return local size of vector
virtual uint local_size() const = 0;
/// Return local ownership range of a vector
virtual std::pair<uint, uint> local_range() const = 0;
/// Determine whether global vector index is owned by this process
virtual bool owns_index(uint i) const = 0;
/// Get block of values (values may live on any process)
virtual void get(double* block, uint m, const uint* rows) const
{
warning("GenericVector::get is redirected to GenericVector::get_local. Use GenericVector::gather for get off-process entries. GenericVector::get will be removed.");
get_local(block, m, rows);
}
/// Get block of values (values must all live on the local process)
virtual void get_local(double* block, uint m, const uint* rows) const = 0;
/// Set block of values
virtual void set(const double* block, uint m, const uint* rows) = 0;
/// Add block of values
virtual void add(const double* block, uint m, const uint* rows) = 0;
/// Get all values on local process
virtual void get_local(Array<double>& values) const = 0;
/// Set all values on local process
virtual void set_local(const Array<double>& values) = 0;
/// Add values to each entry on local process
virtual void add_local(const Array<double>& values) = 0;
/// Gather entries into local vector x
virtual void gather(GenericVector& x, const Array<uint>& indices) const = 0;
/// Gather entries into Array x
virtual void gather(Array<double>& x, const Array<uint>& indices) const = 0;
/// Gather all entries into Array x on process 0
virtual void gather_on_zero(Array<double>& x) const = 0;
/// Add multiple of given vector (AXPY operation)
virtual void axpy(double a, const GenericVector& x) = 0;
/// Replace all entries in the vector by their absolute values
virtual void abs() = 0;
/// Return inner product with given vector
virtual double inner(const GenericVector& x) const = 0;
/// Return norm of vector
virtual double norm(std::string norm_type) const = 0;
/// Return minimum value of vector
virtual double min() const = 0;
/// Return maximum value of vector
virtual double max() const = 0;
/// Return sum of vector
virtual double sum() const = 0;
/// Return sum of selected rows in vector. Repeated entries are only summed once.
virtual double sum(const Array<uint>& rows) const = 0;
/// Multiply vector by given number
virtual const GenericVector& operator*= (double a) = 0;
/// Multiply vector by another vector pointwise
virtual const GenericVector& operator*= (const GenericVector& x) = 0;
/// Divide vector by given number
virtual const GenericVector& operator/= (double a) = 0;
/// Add given vector
virtual const GenericVector& operator+= (const GenericVector& x) = 0;
/// Subtract given vector
virtual const GenericVector& operator-= (const GenericVector& x) = 0;
/// Assignment operator
virtual const GenericVector& operator= (const GenericVector& x) = 0;
/// Assignment operator
virtual const GenericVector& operator= (double a) = 0;
/// Return pointer to underlying data (const version)
virtual const double* data() const
{
dolfin_error("GenericVector.h",
"return pointer to underlying vector data",
"Not implemented by current linear algebra backend");
return 0;
}
/// Return pointer to underlying data
virtual double* data()
{
dolfin_error("GenericVector.h",
"return pointer to underlying vector data",
"Not implemented by current linear algebra backend");
return 0;
}
/// Update ghost values
virtual void update_ghost_values()
{
dolfin_error("GenericVector.h",
"update ghost values",
"Not implemented by current linear algebra backend");
}
//--- Convenience functions ---
/// Get value of given entry
virtual double operator[] (uint i) const
{ double value(0); get_local(&value, 1, &i); return value; }
/// Get value of given entry
virtual double getitem(uint i) const
{ double value(0); get_local(&value, 1, &i); return value; }
/// Set given entry to value. apply("insert") should be called before using
/// using the object.
virtual void setitem(uint i, double value)
{ set(&value, 1, &i); }
};
}
#endif
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