/usr/include/libGenome-1.3/libGenome/gnSourceHeader.h is in libgenome-1.3-0-dev 1.3.1-3build1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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// File: gnSourceHeader.h
// Purpose: Source Header class
// Description: Provides an interface for Headers on disk.
// Changes:
// Version: libGenome 0.5.1
// Author: Aaron Darling
// Modified by:
// Copyright: (c) Aaron Darling
// Licenses: See COPYING file for details
/////////////////////////////////////////////////////////////////////////////
#ifdef HAVE_CONFIG_H
#include "config.h"
#endif
#ifndef _gnSourceHeader_h_
#define _gnSourceHeader_h_
#include "libGenome/gnDefs.h"
#include <string>
#include "libGenome/gnBaseHeader.h"
#include "libGenome/gnBaseSource.h"
#include <utility>
namespace genome {
/**
* gnSourceHeader is used to store a sequence header which resides in another source.
* gnSourceHeaders are created by gnSEQSource and other sources and placed into a spec.
*/
class GNDLLEXPORT gnSourceHeader : public gnBaseHeader
{
public:
/**
* Empty constructor.
*/
gnSourceHeader();
/**
* Constructor, records the header's name and byte offset in the source.
* @param source The source which contains the header.
* @param name The name of the header.
* @param begin The offset into the source where the header starts.
* @param length The length of the header.
*/
gnSourceHeader( gnBaseSource* source, const std::string& name, const uint32 begin, const uint32 length );
/**
* Copy constructor.
* @param s The gnSourceHeader to copy.
*/
gnSourceHeader( const gnSourceHeader& s );
/**
* Destructor, frees memory.
*/
~gnSourceHeader();
gnSourceHeader* Clone() const;
std::string GetHeader() const;
std::string GetHeaderName() const;
/// Not implemented, use gnStringHeader.
// void SetHeader(const std::string& header){};
/// Not implemented, use gnStringHeader.
// void SetHeaderName(const std::string& name){};
uint32 GetLength() const;
/**
* Get the header's start position within the source.
* @return The byte offset of the header's start position.
*/
uint32 GetHeaderStart() const;
/**
* Get the header's start position and length within the source.
* @return The header start position and length as a pair.
*/
std::pair<uint32, uint32> GetHeaderLoc() const;
/**
* Set the header's start position within the source.
* @param start The header start position.
*/
void SetHeaderStart(const uint32 start);
/**
* Get the header's length within the source.
* @param length The header length.
*/
void SetHeaderLength(const uint32 length);
/**
* Set the header's start position and length within the source.
* @param startLen The header start position and length as a pair.
*/
void SetHeaderLoc(const std::pair<uint32, uint32> startLen);
private:
std::string m_name;
uint32 m_start, m_length;
gnBaseSource *m_source;
}; //class gnSourceHeader
inline
gnSourceHeader* gnSourceHeader::Clone() const{
return new gnSourceHeader(*this);
}
inline
std::string gnSourceHeader::GetHeaderName() const{
return m_name;
}
inline
uint32 gnSourceHeader::GetHeaderStart() const{
return m_start;
}
inline
uint32 gnSourceHeader::GetLength() const{
return m_length;
}
inline
std::pair<uint32, uint32> gnSourceHeader::GetHeaderLoc() const{
std::pair<uint32, uint32> p;
p.first = m_start;
p.second = m_length;
return p;
}
inline
void gnSourceHeader::SetHeaderStart(const uint32 start){
m_start = start;
}
inline
void gnSourceHeader::SetHeaderLength(const uint32 length){
m_length = length;
}
inline
void gnSourceHeader::SetHeaderLoc(const std::pair<uint32, uint32> startLen){
m_start = startLen.first;
m_length = startLen.second;
}
} // end namespace genome
#endif
// _gnSourceHeader_h_
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