This file is indexed.

/usr/include/InsightToolkit/Common/itkCenteredSimilarity2DTransform.txx is in libinsighttoolkit3-dev 3.20.1-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
/*=========================================================================

  Program:   Insight Segmentation & Registration Toolkit
  Module:    itkCenteredSimilarity2DTransform.txx
  Language:  C++
  Date:      $Date$
  Version:   $Revision$

  Copyright (c) Insight Software Consortium. All rights reserved.
  See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.

     This software is distributed WITHOUT ANY WARRANTY; without even 
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
     PURPOSE.  See the above copyright notices for more information.

=========================================================================*/
#ifndef __itkCenteredSimilarity2DTransform_txx
#define __itkCenteredSimilarity2DTransform_txx

#include "itkCenteredSimilarity2DTransform.h"


namespace itk
{

// Constructor with default arguments
template <class TScalarType>
CenteredSimilarity2DTransform<TScalarType>
::CenteredSimilarity2DTransform():Superclass(OutputSpaceDimension,
                                             ParametersDimension)
{
}


// Constructor with arguments
template<class TScalarType>
CenteredSimilarity2DTransform<TScalarType>::
CenteredSimilarity2DTransform( unsigned int spaceDimension, 
                  unsigned int parametersDimension):
  Superclass(spaceDimension,parametersDimension)
{

}


// Set Parameters
template <class TScalarType>
void
CenteredSimilarity2DTransform<TScalarType>
::SetParameters( const ParametersType & parameters )
{
  itkDebugMacro( << "Setting parameters " << parameters );

  // Set scale
  const TScalarType scale = parameters[0];
  this->SetVarScale( scale );
 
  // Set angle
  const TScalarType angle = parameters[1];
  this->SetVarAngle( angle );

  InputPointType center;
  for(unsigned int j=0; j < SpaceDimension; j++) 
    {
    center[j] = parameters[j+2];
    }
  this->SetVarCenter( center );

  // Set translation
  OffsetType translation;

  for(unsigned int i=0; i < SpaceDimension; i++) 
    {
    translation[i] = parameters[i+4];
    }

  this->SetVarTranslation( translation );

  this->ComputeMatrix();
  this->ComputeOffset();

  // Modified is always called since we just have a pointer to the
  // parameters and cannot know if the parameters have changed.
  this->Modified();

  itkDebugMacro(<<"After setting parameters ");
}


// Get Parameters
template <class TScalarType>
const typename CenteredSimilarity2DTransform<TScalarType>::ParametersType &
CenteredSimilarity2DTransform<TScalarType>
::GetParameters( void ) const
{
  itkDebugMacro( << "Getting parameters ");

  this->m_Parameters[0] = this->GetScale();
  this->m_Parameters[1] = this->GetAngle();
 
  InputPointType center = this->GetCenter();
  for(unsigned int j=0; j < SpaceDimension; j++) 
    {
    this->m_Parameters[j+2] = center[j];
    }

  OffsetType translation = this->GetTranslation();
  for(unsigned int i=0; i < SpaceDimension; i++) 
    {
    this->m_Parameters[i+4] = translation[i];
    }

  itkDebugMacro(<<"After getting parameters " << this->m_Parameters );

  return this->m_Parameters;
}

// Compute the Jacobian
template<class TScalarType>
const typename CenteredSimilarity2DTransform<TScalarType>::JacobianType &
CenteredSimilarity2DTransform<TScalarType>::
GetJacobian( const InputPointType & p ) const
{
  const double angle = this->GetAngle();
  const double ca = vcl_cos(angle );
  const double sa = vcl_sin(angle );

  this->m_Jacobian.Fill(0.0);

  const InputPointType center = this->GetCenter();  
  const double cx = center[0];
  const double cy = center[1];

  const OutputVectorType translation = this->GetTranslation();

  // derivatives with respect to the scale
  this->m_Jacobian[0][0] =    ca * ( p[0] - cx ) - sa * ( p[1] - cy );
  this->m_Jacobian[1][0] =    sa * ( p[0] - cx ) + ca * ( p[1] - cy ); 

  // derivatives with respect to the angle
  this->m_Jacobian[0][1] = ( -sa * ( p[0] - cx ) - ca * ( p[1] - cy ) ) 
                                                          * this->GetScale();
  this->m_Jacobian[1][1] = (  ca * ( p[0] - cx ) - sa * ( p[1] - cy ) ) 
                                                          * this->GetScale();

  // compute derivatives with respect to the center part
  // first with respect to cx
  this->m_Jacobian[0][2] = 1.0 - ca * this->GetScale();
  this->m_Jacobian[1][2] =     - sa * this->GetScale();
  // then with respect to cy
  this->m_Jacobian[0][3] =       sa * this->GetScale();
  this->m_Jacobian[1][3] = 1.0 - ca * this->GetScale();

  // compute derivatives with respect to the translation part
  // first with respect to tx
  this->m_Jacobian[0][4] = 1.0;
  this->m_Jacobian[1][4] = 0.0;
  // first with respect to ty
  this->m_Jacobian[0][5] = 0.0;
  this->m_Jacobian[1][5] = 1.0;

  return this->m_Jacobian;

}

template <class TScalarType>
void
CenteredSimilarity2DTransform<TScalarType>::
SetFixedParameters( const ParametersType & itkNotUsed(parameters) )
{
  // no fixed parameters
}

template <class TScalarType>
const typename CenteredSimilarity2DTransform<TScalarType>::ParametersType &
CenteredSimilarity2DTransform<TScalarType>::
GetFixedParameters( void ) const
{
  // return dummy parameters
  this->m_FixedParameters.SetSize(0);
  return this->m_FixedParameters;
}
 
// Print self
template<class TScalarType>
void
CenteredSimilarity2DTransform<TScalarType>::
PrintSelf(std::ostream &os, Indent indent) const
{
  Superclass::PrintSelf(os,indent);
}

// Create and return an inverse transformation
template<class TScalarType>
void
CenteredSimilarity2DTransform<TScalarType>::
CloneInverseTo( Pointer & result ) const
{
  result = New();
  this->GetInverse(result.GetPointer());
}

// return an inverse transformation
template<class TScalarType>
bool
CenteredSimilarity2DTransform<TScalarType>::
GetInverse( Self* inverse) const
{
  if(!inverse)
    {
    return false;
    }

  inverse->SetCenter( this->GetCenter() );  // inverse have the same center
  inverse->SetScale(  NumericTraits<double>::One / this->GetScale() );
  inverse->SetAngle( -this->GetAngle() );
  inverse->SetTranslation( -( this->GetInverseMatrix() * this->GetTranslation() ) );
  return true;
}

// Return an inverse of this transform
template<class TScalarType>
typename CenteredSimilarity2DTransform<TScalarType>::InverseTransformBasePointer
CenteredSimilarity2DTransform<TScalarType>
::GetInverseTransform() const
{
  Pointer inv = New();
  if( this->GetInverse(inv) )
    {
    return inv.GetPointer();
    }
  return NULL;
}

// Create and return a clone of the transformation
template<class TScalarType>
void
CenteredSimilarity2DTransform<TScalarType>::
CloneTo( Pointer & result ) const
{
  result = New();
  result->SetCenter( this->GetCenter() );
  result->SetScale( this->GetScale() );
  result->SetAngle( this->GetAngle() );
  result->SetTranslation( this->GetTranslation() );
}

} // namespace

#endif