This file is indexed.

/usr/include/InsightToolkit/Common/itkIdentityTransform.h is in libinsighttoolkit3-dev 3.20.1-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
/*=========================================================================

  Program:   Insight Segmentation & Registration Toolkit
  Module:    itkIdentityTransform.h
  Language:  C++
  Date:      $Date$
  Version:   $Revision$

  Copyright (c) Insight Software Consortium. All rights reserved.
  See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.

     This software is distributed WITHOUT ANY WARRANTY; without even 
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
     PURPOSE.  See the above copyright notices for more information.

=========================================================================*/
#ifndef __itkIdentityTransform_h
#define __itkIdentityTransform_h

#include "itkObject.h"
#include "itkPoint.h"
#include "itkVector.h"
#include "itkCovariantVector.h"
#include "vnl/vnl_vector_fixed.h"
#include "itkArray.h"
#include "itkArray2D.h"
#include "itkTransform.h"

#include "itkObjectFactory.h"


namespace itk
{
  
/** \class IdentityTransform
 * \brief Implementation of an Identity Transform.
 *
 * This class defines the generic interface for an Identity Transform.
 * 
 * It will map every point to itself, every vector to itself and
 * every covariant vector to itself.
 * 
 * This class is intended to be used primarily as a default Transform
 * for initializing those classes supporting a generic Transform.
 *
 * This class is templated over the Representation type for coordinates
 * (that is the type used for representing the components of points and
 * vectors) and over the dimension of the space. In this case the Input
 * and Output spaces are the same so only one dimension is required.
 *
 * \ingroup Transforms
 *
 */
template <class TScalarType,
          unsigned int NDimensions=3>
class ITK_EXPORT  IdentityTransform  : public Transform<TScalarType,NDimensions,NDimensions>
{
public:
  /** Standard class typedefs. */
  typedef IdentityTransform                                 Self;
  typedef Transform<TScalarType,NDimensions,NDimensions>    Superclass;
  typedef SmartPointer< Self >                              Pointer;
  typedef SmartPointer< const Self >                        ConstPointer;
  
  /** New method for creating an object using a factory. */
  itkNewMacro(Self);

  /** Run-time type information (and related methods). */
  itkTypeMacro( IdentityTransform, Transform );

  /** Dimension of the domain space. */
  itkStaticConstMacro(InputSpaceDimension, unsigned int, NDimensions);
  itkStaticConstMacro(OutputSpaceDimension, unsigned int, NDimensions);
  
  /** Type of the input parameters. */
  typedef  TScalarType     ScalarType;

  /** Type of the input parameters. */
  typedef  typename Superclass::ParametersType                 ParametersType;

  /** Type of the Jacobian matrix. */
  typedef  typename Superclass::JacobianType                   JacobianType;

  /** Standard vector type for this class. */
  typedef Vector<TScalarType,
                itkGetStaticConstMacro(InputSpaceDimension)>  InputVectorType;
  typedef Vector<TScalarType,
                itkGetStaticConstMacro(OutputSpaceDimension)> OutputVectorType;
  
  /** Standard covariant vector type for this class */
  typedef CovariantVector<TScalarType,
                          itkGetStaticConstMacro(InputSpaceDimension)>  InputCovariantVectorType;
  typedef CovariantVector<TScalarType,
                          itkGetStaticConstMacro(OutputSpaceDimension)> OutputCovariantVectorType;
  
  /** Standard vnl_vector type for this class. */
  typedef vnl_vector_fixed<TScalarType,
                           itkGetStaticConstMacro(InputSpaceDimension)>  InputVnlVectorType;
  typedef vnl_vector_fixed<TScalarType,
                           itkGetStaticConstMacro(OutputSpaceDimension)> OutputVnlVectorType;
  
  /** Standard coordinate point type for this class */
  typedef Point<TScalarType,
                itkGetStaticConstMacro(InputSpaceDimension)> InputPointType;
  typedef Point<TScalarType,
                itkGetStaticConstMacro(OutputSpaceDimension)> OutputPointType;

  /** Base inverse transform type. This type should not be changed to the
   * concrete inverse transform type or inheritance would be lost.*/
  typedef typename Superclass::InverseTransformBaseType InverseTransformBaseType;
  typedef typename InverseTransformBaseType::Pointer    InverseTransformBasePointer;
  
  /**  Method to transform a point. */
  virtual OutputPointType TransformPoint(const InputPointType  &point ) const
    { return point; }

  /**  Method to transform a vector. */
  virtual OutputVectorType TransformVector(const InputVectorType &vector) const
    { return vector; }

  /**  Method to transform a vnl_vector. */
  virtual OutputVnlVectorType TransformVector(const InputVnlVectorType &vector) const
    { return vector; }

  /**  Method to transform a CovariantVector. */
  virtual OutputCovariantVectorType TransformCovariantVector(
    const InputCovariantVectorType &vector) const
    { return vector; }

  /** Set the transformation to an Identity
   *
   * This is a NULL operation in the case of this particular transform.
     The method is provided only to comply with the interface of other transforms. */
  void SetIdentity( void ) { }

  /** Compute the Jacobian of the transformation
   *
   * This method computes the Jacobian matrix of the transformation.
   * given point or vector, returning the transformed point or
   * vector. The rank of the Jacobian will also indicate if the transform
   * is invertible at this point.
   *
   * The Jacobian can be expressed as a set of partial derivatives of the
   * output point components with respect to the parameters that defined
   * the transform:
   *
   * \f[
   *
      J=\left[ \begin{array}{cccc}
      \frac{\partial x_{1}}{\partial p_{1}} & 
      \frac{\partial x_{2}}{\partial p_{1}} & 
      \cdots  & \frac{\partial x_{n}}{\partial p_{1}}\\
      \frac{\partial x_{1}}{\partial p_{2}} & 
      \frac{\partial x_{2}}{\partial p_{2}} & 
      \cdots  & \frac{\partial x_{n}}{\partial p_{2}}\\
      \vdots  & \vdots  & \ddots  & \vdots \\
      \frac{\partial x_{1}}{\partial p_{m}} & 
      \frac{\partial x_{2}}{\partial p_{m}} & 
      \cdots  & \frac{\partial x_{n}}{\partial p_{m}}
      \end{array}\right] 
   *
   * \f]
   */
  virtual const JacobianType & GetJacobian(const InputPointType  & ) const
    { 
    return this->m_Jacobian;
    }

  /** Return an inverse of the identity transform - another identity transform. */
  virtual InverseTransformBasePointer GetInverseTransform() const
    {
    return this->New().GetPointer();
    }
  
  /** Indicates that this transform is linear. That is, given two
   * points P and Q, and scalar coefficients a and b, then
   *
   *           T( a*P + b*Q ) = a * T(P) + b * T(Q)
   */
  virtual bool IsLinear() const { return true; }

  /** Get the Fixed Parameters. */
  virtual const ParametersType& GetFixedParameters(void) const
    {
    return this->m_FixedParameters;
    }

  /** Set the fixed parameters and update internal transformation. */
  virtual void SetFixedParameters( const ParametersType & ) {}

  /** Get the Parameters. */
  virtual const ParametersType& GetParameters(void) const
    {
    return this->m_Parameters;
    }

  /** Set the fixed parameters and update internal transformation. */
  virtual void SetParameters( const ParametersType & ) {}


protected:
  IdentityTransform():Transform<TScalarType,NDimensions,NDimensions>(NDimensions,1) 
    {
    // The Jacobian is constant, therefore it can be initialized in the constructor.
    this->m_Jacobian = JacobianType(NDimensions,1); 
    this->m_Jacobian.Fill(0.0); 
    } 
  virtual ~IdentityTransform() {}

private:
  IdentityTransform(const Self&); //purposely not implemented
  void operator=(const Self&); //purposely not implemented
};

} // end namespace itk

#endif