/usr/include/InsightToolkit/SpatialObject/itkMetaImageConverter.txx is in libinsighttoolkit3-dev 3.20.1-1.
This file is owned by root:root, with mode 0o644.
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Program: Insight Segmentation & Registration Toolkit
Module: itkMetaImageConverter.txx
Language: C++
Date: $Date$
Version: $Revision$
Copyright (c) Insight Software Consortium. All rights reserved.
See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.
This software is distributed WITHOUT ANY WARRANTY; without even
the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE. See the above copyright notices for more information.
=========================================================================*/
#ifndef __itkMetaImageConverter_txx
#define __itkMetaImageConverter_txx
#include "itkMetaImageConverter.h"
#include "itkImageRegionIterator.h"
#include "itkImageRegionIteratorWithIndex.h"
namespace itk
{
/** Constructor */
template <unsigned int NDimensions, class PixelType>
MetaImageConverter<NDimensions,PixelType>
::MetaImageConverter()
{
}
/** Convert a metaImage into an ImageMaskSpatialObject */
template <unsigned int NDimensions, class PixelType>
typename MetaImageConverter<NDimensions,PixelType>::MaskSpatialObjectPointer
MetaImageConverter<NDimensions,PixelType>
::MetaImageToImageMaskSpatialObject(MetaImage * image)
{
MaskSpatialObjectPointer spatialObject = MaskSpatialObjectType::New();
typedef itk::Image<unsigned char,NDimensions> ImageType;
typedef typename ImageType::Pointer ImagePointer;
typedef typename ImageType::SizeType SizeType;
typedef typename ImageType::RegionType RegionType;
ImagePointer myImage = ImageType::New();
SizeType size;
double spacing[NDimensions];
for(unsigned int i=0;i<NDimensions;i++)
{
size[i] = image->DimSize()[i];
spacing[i] = image->ElementSpacing()[i];
if(spacing[i] == 0) {spacing[i] = 1;}
}
RegionType region;
region.SetSize(size);
itk::Index<NDimensions> zeroIndex;
zeroIndex.Fill(0);
region.SetIndex( zeroIndex );
myImage->SetLargestPossibleRegion(region);
myImage->SetBufferedRegion(region);
myImage->SetRequestedRegion(region);
myImage->SetSpacing(spacing);
myImage->Allocate();
itk::ImageRegionIteratorWithIndex< ImageType > it(myImage, region);
for(unsigned int i = 0; !it.IsAtEnd(); i++, ++it)
{
it.Set(
static_cast< typename ImageType::PixelType >( image->ElementData(i) ));
}
spatialObject->SetImage(myImage);
spatialObject->SetId(image->ID());
spatialObject->SetParentId(image->ParentID());
spatialObject->GetProperty()->SetName(image->Name());
return spatialObject;
}
/** Convert a metaImage into an Image SpatialObject */
template <unsigned int NDimensions, class PixelType>
typename MetaImageConverter<NDimensions,PixelType>::SpatialObjectPointer
MetaImageConverter<NDimensions,PixelType>
::MetaImageToImageSpatialObject(MetaImage * image)
{
SpatialObjectPointer spatialObject = SpatialObjectType::New();
typedef itk::Image<PixelType,NDimensions> ImageType;
typedef typename ImageType::Pointer ImagePointer;
typedef typename ImageType::SizeType SizeType;
typedef typename ImageType::RegionType RegionType;
ImagePointer myImage = ImageType::New();
SizeType size;
double spacing[NDimensions];
for(unsigned int i=0;i<NDimensions;i++)
{
size[i] = image->DimSize()[i];
spacing[i] = image->ElementSpacing()[i];
if(spacing[i] == 0) {spacing[i] = 1;}
}
RegionType region;
region.SetSize(size);
itk::Index<NDimensions> zeroIndex;
zeroIndex.Fill(0);
region.SetIndex( zeroIndex );
myImage->SetLargestPossibleRegion(region);
myImage->SetBufferedRegion(region);
myImage->SetRequestedRegion(region);
myImage->SetSpacing(spacing);
myImage->Allocate();
itk::ImageRegionIteratorWithIndex< ImageType > it(myImage, region);
for(unsigned int i = 0; !it.IsAtEnd(); i++, ++it)
{
it.Set(
static_cast< typename ImageType::PixelType >( image->ElementData(i) ));
}
spatialObject->SetImage(myImage);
spatialObject->SetId(image->ID());
spatialObject->SetParentId(image->ParentID());
spatialObject->GetProperty()->SetName(image->Name());
return spatialObject;
}
/** Convert an Image SpatialObject into a metaImage */
template <unsigned int NDimensions, class PixelType>
MetaImage*
MetaImageConverter<NDimensions,PixelType>
::ImageSpatialObjectToMetaImage(SpatialObjectType * spatialObject)
{
typedef itk::Image<PixelType,NDimensions> ImageType;
typedef typename ImageType::ConstPointer ImageConstPointer;
typedef typename ImageType::SizeType SizeType;
typedef typename ImageType::RegionType RegionType;
ImageConstPointer SOImage = spatialObject->GetImage();
float spacing[NDimensions];
int size[NDimensions];
for(unsigned int i=0;i<NDimensions;i++)
{
size[i] = SOImage->GetLargestPossibleRegion().GetSize()[i];
spacing[i] = SOImage->GetSpacing()[i];
}
MetaImage* Image = new MetaImage(NDimensions,size,
spacing,MET_GetPixelType(typeid(PixelType)));
itk::ImageRegionConstIterator< ImageType > it(SOImage,
SOImage->GetLargestPossibleRegion());
for(unsigned int i = 0; !it.IsAtEnd(); i++, ++it)
{
Image->ElementData(i,it.Get());
}
Image->ID(spatialObject->GetId());
if(spatialObject->GetParent())
{
Image->ParentID(spatialObject->GetParent()->GetId());
}
return Image;
}
/** Read a meta file give the type */
template <unsigned int NDimensions, class PixelType>
typename MetaImageConverter<NDimensions,PixelType>::SpatialObjectPointer
MetaImageConverter<NDimensions,PixelType>
::ReadMeta(const char* name)
{
SpatialObjectPointer spatialObject;
MetaImage* Image = new MetaImage();
Image->Read(name);
Image->PrintInfo();
spatialObject = MetaImageToImageSpatialObject(Image);
return spatialObject;
}
/** Write a meta Image file */
template <unsigned int NDimensions, class PixelType>
bool
MetaImageConverter<NDimensions,PixelType>
::WriteMeta(SpatialObjectType* spatialObject,const char* name)
{
MetaImage* Image = ImageSpatialObjectToMetaImage(spatialObject);
Image->Write(name);
return true;
}
} // end namespace itk
#endif
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