/usr/include/InsightToolkit/SpatialObject/itkMetaLandmarkConverter.txx is in libinsighttoolkit3-dev 3.20.1-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 | /*=========================================================================
Program: Insight Segmentation & Registration Toolkit
Module: itkMetaLandmarkConverter.txx
Language: C++
Date: $Date$
Version: $Revision$
Copyright (c) Insight Software Consortium. All rights reserved.
See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.
This software is distributed WITHOUT ANY WARRANTY; without even
the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE. See the above copyright notices for more information.
=========================================================================*/
#ifndef __itkMetaLandmarkConverter_txx
#define __itkMetaLandmarkConverter_txx
#include "itkMetaLandmarkConverter.h"
namespace itk
{
/** Constructor */
template <unsigned int NDimensions>
MetaLandmarkConverter<NDimensions>
::MetaLandmarkConverter()
{
}
/** Convert a metaLandmark into an Landmark SpatialObject */
template <unsigned int NDimensions>
typename MetaLandmarkConverter<NDimensions>::SpatialObjectPointer
MetaLandmarkConverter<NDimensions>
::MetaLandmarkToLandmarkSpatialObject(MetaLandmark * Landmark)
{
typedef itk::LandmarkSpatialObject<NDimensions> LandmarkSpatialObjectType;
typename LandmarkSpatialObjectType::Pointer landmark =
LandmarkSpatialObjectType::New();
//typedef LandmarkSpatialObjectType::VectorType VectorType;
typedef vnl_vector<double> VectorType;
unsigned int ndims = Landmark->NDims();
double spacing[NDimensions];
for(unsigned int ii=0;ii<ndims;ii++)
{
spacing[ii]=Landmark->ElementSpacing()[ii];
}
landmark->GetIndexToObjectTransform()->SetScaleComponent(spacing);
landmark->GetProperty()->SetName(Landmark->Name());
landmark->SetId(Landmark->ID());
landmark->SetParentId(Landmark->ParentID());
landmark->GetProperty()->SetRed(Landmark->Color()[0]);
landmark->GetProperty()->SetGreen(Landmark->Color()[1]);
landmark->GetProperty()->SetBlue(Landmark->Color()[2]);
landmark->GetProperty()->SetAlpha(Landmark->Color()[3]);
typedef itk::SpatialObjectPoint<NDimensions> LandmarkPointType;
typedef MetaLandmark::PointListType ListType;
ListType::iterator it2 = Landmark->GetPoints().begin();
vnl_vector<double> v(ndims);
for(unsigned int identifier=0;identifier< Landmark->GetPoints().size();identifier++)
{
LandmarkPointType pnt;
typedef typename LandmarkSpatialObjectType::PointType PointType;
PointType point;
for(unsigned int ii=0;ii<ndims;ii++)
{
point[ii]=(*it2)->m_X[ii];
}
pnt.SetPosition(point);
pnt.SetRed((*it2)->m_Color[0]);
pnt.SetGreen((*it2)->m_Color[1]);
pnt.SetBlue((*it2)->m_Color[2]);
pnt.SetAlpha((*it2)->m_Color[3]);
landmark->GetPoints().push_back(pnt);
it2++;
}
return landmark;
}
/** Convert an Landmark SpatialObject into a metaLandmark */
template <unsigned int NDimensions>
MetaLandmark*
MetaLandmarkConverter<NDimensions>
::LandmarkSpatialObjectToMetaLandmark(SpatialObjectType * spatialObject)
{
MetaLandmark* Landmark = new MetaLandmark(NDimensions);
// fill in the Landmark information
typename SpatialObjectType::PointListType::const_iterator i;
for(i = dynamic_cast<SpatialObjectType*>(spatialObject)->GetPoints().begin();
i != dynamic_cast<SpatialObjectType*>(spatialObject)->GetPoints().end();
i++)
{
LandmarkPnt* pnt = new LandmarkPnt(NDimensions);
for(unsigned int d=0;d<NDimensions;d++)
{
pnt->m_X[d]=(*i).GetPosition()[d];
}
pnt->m_Color[0] = (*i).GetRed();
pnt->m_Color[1] = (*i).GetGreen();
pnt->m_Color[2] = (*i).GetBlue();
pnt->m_Color[3] = (*i).GetAlpha();
Landmark->GetPoints().push_back(pnt);
}
if(NDimensions == 2)
{
Landmark->PointDim("x y red green blue alpha");
}
else
{
Landmark->PointDim("x y z red green blue alpha");
}
float color[4];
for(unsigned int ii=0;ii<4;ii++)
{
color[ii]=spatialObject->GetProperty()->GetColor()[ii];
}
Landmark->Color(color);
Landmark->ID( spatialObject->GetId());
if(spatialObject->GetParent())
{
Landmark->ParentID(spatialObject->GetParent()->GetId());
}
Landmark->NPoints(Landmark->GetPoints().size());
return Landmark;
}
/** Read a meta file give the type */
template <unsigned int NDimensions>
typename MetaLandmarkConverter<NDimensions>::SpatialObjectPointer
MetaLandmarkConverter<NDimensions>
::ReadMeta(const char* name)
{
SpatialObjectPointer spatialObject;
MetaLandmark* Landmark = new MetaLandmark();
Landmark->Read(name);
spatialObject = MetaLandmarkToLandmarkSpatialObject(Landmark);
return spatialObject;
}
/** Write a meta Landmark file */
template <unsigned int NDimensions>
bool
MetaLandmarkConverter<NDimensions>
::WriteMeta(SpatialObjectType* spatialObject,const char* name)
{
MetaLandmark* Landmark = LandmarkSpatialObjectToMetaLandmark(spatialObject);
Landmark->BinaryData(true);
Landmark->Write(name);
return true;
}
} // end namespace itk
#endif
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