This file is indexed.

/usr/include/InsightToolkit/Utilities/MetaIO/metaMesh.h is in libinsighttoolkit3-dev 3.20.1-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
/*============================================================================
  MetaIO
  Copyright 2000-2010 Insight Software Consortium

  Distributed under the OSI-approved BSD License (the "License");
  see accompanying file Copyright.txt for details.

  This software is distributed WITHOUT ANY WARRANTY; without even the
  implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
  See the License for more information.
============================================================================*/
#include "metaTypes.h"

#ifndef ITKMetaIO_METAMESH_H
#define ITKMetaIO_METAMESH_H

#include "metaUtils.h"
#include "metaObject.h"

#ifdef _MSC_VER
#pragma warning ( disable: 4251 )
#endif

#include <list>


/*!    MetaMesh (.h and .cxx)
 *
 * Description:
 *    Reads and Writes MetaMeshFiles.
 *
 * \author Julien Jomier
 * 
 * \date June, 2004
 * 
 * Depends on:
 *    MetaUtils.h
 */

#if (METAIO_USE_NAMESPACE)
namespace METAIO_NAMESPACE {
#endif

/** Typedef for the type of cells */
#define MET_NUM_CELL_TYPES 9

enum MET_CellGeometry {MET_VERTEX_CELL=0, MET_LINE_CELL, MET_TRIANGLE_CELL, MET_QUADRILATERAL_CELL, 
        MET_POLYGON_CELL, MET_TETRAHEDRON_CELL, MET_HEXAHEDRON_CELL, 
        MET_QUADRATIC_EDGE_CELL, MET_QUADRATIC_TRIANGLE_CELL};

const unsigned char MET_CellSize[MET_NUM_VALUE_TYPES] = {
  1,2,3,4,5,4,8,3,6};

const char MET_CellTypeName[MET_NUM_VALUE_TYPES][4] = {
   {'V','R','T','\0'},
   {'L','N','E','\0'},
   {'T','R','I','\0'},
   {'Q','A','D','\0'},
   {'P','L','Y','\0'},
   {'T','E','T','\0'},
   {'H','E','X','\0'},   
   {'Q','E','D','\0'}, 
   {'Q','T','R','\0'}};


/** Define a mesh point */
class METAIO_EXPORT MeshPoint
{
public:

  MeshPoint(int dim);
  ~MeshPoint();
  
  unsigned int m_Dim;
  float* m_X;
  int m_Id;
};


/** Define a mesh cell 
 *  a cell contains a list of Ids corresponding to the list 
 *  of points */
class METAIO_EXPORT MeshCell
{
public:

  MeshCell(int dim);
  ~MeshCell();
  
  int m_Id;
  unsigned int m_Dim;
  int* m_PointsId;
};

/** Define a mesh cell links
 *  a celllink contains a list of Ids corresponding to the list 
 *  of links cells */
class METAIO_EXPORT MeshCellLink
{
public:

  MeshCellLink()
    { 
    m_Id = 0;
    }
  ~MeshCellLink()
    { 
    };

  int m_Id; // id of the cell link
  METAIO_STL::list<int> m_Links;
};

/** Define a mesh point data */
class METAIO_EXPORT MeshDataBase
{
public:

  MeshDataBase()
    { 
    m_Id = -1;
    }
  virtual ~MeshDataBase()
    { 
    };
  
  virtual void Write( METAIO_STREAM::ofstream* stream) = 0;
  virtual unsigned int GetSize(void) = 0;
  virtual MET_ValueEnumType GetMetaType() = 0;
  int m_Id;

protected:

  METAIO_STREAM::ifstream* m_ReadStream;
  METAIO_STREAM::ofstream* m_WriteStream;

};

/** Mesh point data class for basic types (i.e int, float ... ) */
template<typename TElementType>
class METAIO_EXPORT MeshData : public MeshDataBase
{
public:

  MeshData() {m_Id=-1;}
  ~MeshData() {};

  virtual MET_ValueEnumType GetMetaType()
    {
    return MET_GetPixelType(typeid(TElementType));
    }

  virtual void Write( METAIO_STREAM::ofstream* stream)
    {
    //char* id = new char[sizeof(int)];
    // The file is written as LSB by default
    int mid = m_Id;
    MET_SwapByteIfSystemMSB(&mid,MET_INT);
    //MET_DoubleToValue((double)m_Id,MET_INT,id,0);
    stream->write((char *)&mid,sizeof(int));
    //delete [] id;
    //char* data = new char[sizeof(m_Data)];
    //double mdata = m_Data;
    //MET_DoubleToValue((double)m_Data,GetMetaType(),data,0);
    TElementType data = m_Data;
    MET_SwapByteIfSystemMSB(&data,GetMetaType());
    stream->write((char *)&data,sizeof(data));
    }

  virtual unsigned int GetSize(void)
    {
    unsigned int size = sizeof(int);
    size += sizeof(m_Data);
    return size;
    }

  TElementType m_Data;
};


class METAIO_EXPORT MetaMesh : public MetaObject
  {

  /////
  //
  // PUBLIC
  //
  ////
  public:

   typedef METAIO_STL::list<MeshPoint*> PointListType;
   typedef METAIO_STL::list<MeshCell*>  CellListType;
   typedef METAIO_STL::list<MeshCellLink*>  CellLinkListType;
   typedef METAIO_STL::list<MeshDataBase*> PointDataListType;
   typedef METAIO_STL::list<MeshDataBase*> CellDataListType;

    ////
    //
    // Constructors & Destructor
    //
    ////
    MetaMesh(void);

    MetaMesh(const char *_headerName);   

    MetaMesh(const MetaMesh *_tube); 
    
    MetaMesh(unsigned int dim);

    ~MetaMesh(void);

    void PrintInfo(void) const;

    void CopyInfo(const MetaObject * _object);

    //    NPoints(...)
    //       Required Field
    //       Number of points wich compose the mesh
    int   NPoints(void) const;

    //    NCells(...)
    //       Required Field
    //       Number of cells wich compose the mesh
    int   NCells(void) const;

    //    NCellLinks(...)
    //       Required Field
    //       Number of cellLinks wich compose the mesh
    int   NCellLinks(void) const;

    //    NCellTypes(...)
    //       Required Field
    //       Number of celles wich compose the mesh
    void  NCellTypes(int ncelltypes);
    int   NCellTypes(void) const;

    /** Clear the metaMesh */
    void  Clear(void);

    PointListType & GetPoints(void) {return m_PointList;}
    const PointListType & GetPoints(void) const  {return m_PointList;}
    
    CellListType & GetCells(MET_CellGeometry geom) {return *(m_CellListArray[geom]);}
    const CellListType & GetCells(MET_CellGeometry geom) const  {return *(m_CellListArray[geom]);}

    CellLinkListType & GetCellLinks(void) {return m_CellLinks;}
    const CellLinkListType & GetCellLinks(void) const  {return m_CellLinks;}

    PointDataListType & GetPointData(void) {return m_PointData;}
    const PointDataListType & GetPointData(void) const  {return m_PointData;}
    
    CellDataListType & GetCellData(void) {return m_CellData;}
    const CellDataListType & GetCellData(void) const  {return m_CellData;}

    MET_ValueEnumType PointDataType(void) const {return m_PointDataType;}
    void  PointDataType(MET_ValueEnumType _elementType){m_PointDataType = _elementType;}

    MET_ValueEnumType CellDataType(void) const {return m_CellDataType;}
    void  CellDataType(MET_ValueEnumType _elementType){m_CellDataType = _elementType;}

  ////
  //
  // PROTECTED
  //
  ////
  protected:

    bool  m_ElementByteOrderMSB;

    void  M_Destroy(void);

    void  M_SetupReadFields(void);

    void  M_SetupWriteFields(void);

    bool  M_Read(void);

    bool  M_Write(void);

    int m_NPoints;   
    int m_NCells; 
    int m_NCellLinks;
    int m_NPointData;
    int m_NCellData;
    char m_PointDim[255]; // "PointDim = "       "x y z r"

    PointListType m_PointList;
   
    // We store the Cell lists in a vector
    CellListType* m_CellListArray[MET_NUM_CELL_TYPES];
    CellLinkListType m_CellLinks;
    PointDataListType m_PointData;
    CellDataListType m_CellData;

    MET_ValueEnumType m_PointType;
    MET_ValueEnumType m_PointDataType;
    MET_ValueEnumType m_CellDataType;

  };

#if (METAIO_USE_NAMESPACE)
};
#endif


#endif