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/usr/include/linbox/util/matrix-stream.inl is in liblinbox-dev 1.1.6~rc0-4.1.

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#include "linbox/util/formats/matrix-stream-readers.h"

namespace LinBox {

template<class Field>
bool MatrixStream<Field>::readWhiteSpace()
{
	char c;
	while(in.get(c)) {
		if (isspace(c))
			switch(c) {
			    case '\n': ++lineNumber; break;
		    	case '\r': if( in.peek() != '\n' ) ++lineNumber; break;
			}
		else {
    		in.putback(c);
			return true;
		}

	}
	return false; // because eof or read error.
}

template<class Field>
void MatrixStreamReader<Field>::saveTriple(size_t m, size_t n, const Element& v ) {
	static std::pair<std::pair<size_t,size_t>,Element> temp;
	temp.first.first = m;
	temp.first.second = n;
	temp.second = v;
	savedTriples.push(temp);
}

template<class Field>
MatrixStreamError MatrixStreamReader<Field>::init
	(const char* firstLine, std::istream* i, MatrixStream<Field>* m )
{
	if( !i || !m || !firstLine ) throw "Bad istream or MatrixStream";
	sin = i;
	ms = m;
	return initImpl(firstLine);
}

template<class Field>
MatrixStreamError MatrixStreamReader<Field>::nextTriple
	(size_t& m, size_t& n, Element& v) 
{
	if( savedTriples.size() == 0 ) {
		if( atEnd ) {
			if( lastError <= GOOD ) lastError = END_OF_MATRIX;
			return lastError;
		}
		if( lastError > GOOD ) return lastError;
		lastError =  nextTripleImpl(m,n,v);
		return lastError;
	}
	m = savedTriples.front().first.first;
	n = savedTriples.front().first.second;
	v = savedTriples.front().second;
	savedTriples.pop();
	return GOOD;
}

template<class Field>
MatrixStreamError MatrixStreamReader<Field>::getArray
	(std::vector<Element> &array)
{
	MatrixStreamError mse = GOOD;
	size_t c = 0,loc,i,j;
	Element v;

	while( true ) {
		mse = nextTriple(i,j,v);
		if( mse > GOOD ) break;
		if( i > 0 ) {
			mse = getColumns(c);
			if( mse > GOOD ) break;
		}
		loc = i*c+j;
		if( loc >= array.size() )
			array.resize(c ? (i+1)*c : loc+1);
		array[loc] = v;
	}
	if( mse > END_OF_MATRIX ) return mse;
	mse = getRows(j);
	if( mse > END_OF_MATRIX ) return mse;
	if( array.size() < j*c ) array.resize(j*c);
	return GOOD;
}

template<class Field>
MatrixStreamError MatrixStreamReader<Field>::saveNext() {
	if( lastError > GOOD ) return lastError;
	if( atEnd ) {
		lastError = END_OF_MATRIX;
		return lastError;
	}
	size_t m, n;
	Element v;
	lastError = nextTripleImpl(m,n,v);
	if( lastError <= GOOD ) saveTriple(m,n,v);
	return lastError;
}

template<class Field>
MatrixStreamError MatrixStreamReader<Field>::getRows(size_t& m) {
	MatrixStreamError toRet = GOOD;
	while( !knowM ) {
		if( atEnd ) return END_OF_MATRIX;
		toRet = saveNext();
		if( toRet > GOOD ) return toRet;
	}
	m = _m;
	return toRet;
}

template<class Field>
MatrixStreamError MatrixStreamReader<Field>::getColumns(size_t& n) {
	MatrixStreamError toRet = GOOD;
	while( !knowN ) {
		if( atEnd ) return END_OF_MATRIX;
		toRet = saveNext();
		if( toRet > GOOD ) return toRet;
	}
	n = _n;
	return toRet;
}

template<class Field>
void MatrixStream<Field>::init() {
	lineNumber = 1;

	//Skip comments
	readWhiteSpace();
	while( !in.eof() && in.peek() == '#' ) {
		char c;
		while( in.get(c) ) {
			if( c == '\n' ) break;
			if( c == '\r' ) {
				if( in.peek() == '\n' )
					in.get();
				break;
			}
		}
		++lineNumber;
		readWhiteSpace();
	}

	//Get first line
	firstLine = new char[FIRST_LINE_LIMIT];
	in.getline(firstLine,FIRST_LINE_LIMIT);
	firstLine[in.gcount()] = '\0';

	//Initialize readers
	currentError = NO_FORMAT;
	__MATRIX_STREAM_READERDEFS
	delete[] firstLine;

	if( !reader ) return;
	else if( currentError > GOOD )
		errorLineNumber = lineNumber;
}

template<class Field>
void MatrixStream<Field>::addReader( MatrixStreamReader<Field>* r ) {
	if( currentError == GOOD ) {
		delete r;
		return;
	}

	MatrixStreamError mse = r->init( firstLine, &in, this );
	if( mse < currentError ) {
		if( reader ) delete reader;
		reader = r;
		currentError = mse;
	}
}

template<class Field>
MatrixStream<Field>::MatrixStream(const Field& fld, std::istream& i )
	:reader(NULL),in(i),readAnythingYet(false),f(fld)
{
	init();
	if( currentError > GOOD ) throw currentError;
}

template<class Field>
bool MatrixStream<Field>::nextTriple(size_t& m, size_t& n, Element& v) {
	if( currentError > GOOD ) return false;

	do {
		currentError = reader->nextTriple(m,n,v);
	} while( f.isZero(v) && currentError == GOOD );

	if( currentError != GOOD ) {
		errorLineNumber = lineNumber;
		return false;
	}

	readAnythingYet = true;
	return true;
}

template<class Field>
bool MatrixStream<Field>::getArray(std::vector<Element> &array) {
	if( currentError > GOOD || readAnythingYet ) return false;
	currentError = reader->getArray(array);
	
	if( currentError != GOOD ) {
		errorLineNumber = lineNumber;
		return false;
	}

	readAnythingYet = true;
	return true;
}

template<class Field>
bool MatrixStream<Field>::getRows(size_t& m) {
	MatrixStreamError mse = reader->getRows(m);

	if( currentError > GOOD ) 
		return (mse == GOOD);
	else if( mse > GOOD ) {
		currentError = mse;
		errorLineNumber = lineNumber;
		return false;
	}
	else return true;
}

template<class Field>
bool MatrixStream<Field>::getColumns(size_t& n) {
	MatrixStreamError mse = reader->getColumns(n);

	if( currentError > GOOD ) 
		return (mse == GOOD);
	else if( mse > GOOD ) {
		currentError = mse;
		errorLineNumber = lineNumber;
		return false;
	}
	else return true;
}

template<class Field>
bool MatrixStream<Field>::getDimensions( size_t& m, size_t& n ) {
	return( getRows(m) && getColumns(n) );
}

template<class Field>
MatrixStreamError MatrixStream<Field>::reportError
		( const char* func, int line ) const
	{
        	std::cerr << std::endl
		         << "ERROR (" << func << ":" << line << "): "
			 << "Problem reading matrix:" << std::endl;
		switch( getError() ) {
		    case END_OF_MATRIX:
		    	std::cerr << "There is no more data in the matrix file.";
			break;
		    case END_OF_FILE:
		    	std::cerr << "An EOF was encountered unexpectedly in reading the data.";
			break;
		    case BAD_FORMAT:
		    	std::cerr << "There is a formatting error in the matrix.";
			break;
		    case NO_FORMAT:
		    	std::cerr << "The matrix format is not recognized or supported.";
			break;
		    case GOOD: break;
		    default: break;
		}
		std::cerr << std::endl << "At line number: " << lineNumber << std::endl
		          << "Matrix format is " << getFormat() << std::endl;
		return currentError;
	}

template<class Field>
int MatrixStream<Field>::getLineNumber() const {
	if( currentError > GOOD ) return errorLineNumber;
	else return lineNumber;
}

} // end of namespace LinBox