/usr/include/ncbi/bxmlobj.h is in libncbi6-dev 6.1.20110713-3ubuntu2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 | #ifndef _bxmlobj_
#define _bxmlobj_
#undef NLM_EXTERN
#ifdef NLM_IMPORT
#define NLM_EXTERN NLM_IMPORT
#else
#define NLM_EXTERN extern
#endif
#ifdef __cplusplus
extern "C" { /* } */
#endif
/**************************************************
*
* Generated objects for Module NCBI-BlastOutput
* Generated using ASNCODE Revision: 6.16 at Sep 15, 2006 1:53 PM
*
**************************************************/
NLM_EXTERN Boolean LIBCALL
bxmlobjAsnLoad PROTO((void));
/**************************************************
*
* BlastOutput
*
**************************************************/
typedef struct struct_BlastOutput {
Uint4 OBbits__;
CharPtr program;
CharPtr version;
CharPtr reference;
CharPtr db;
CharPtr query_ID;
CharPtr query_def;
Int4 query_len;
CharPtr query_seq;
struct struct_Parameters PNTR param;
struct struct_Iteration PNTR iterations;
struct struct_Statistics PNTR mbstat;
} BlastOutput, PNTR BlastOutputPtr;
NLM_EXTERN BlastOutputPtr LIBCALL BlastOutputFree PROTO ((BlastOutputPtr ));
NLM_EXTERN BlastOutputPtr LIBCALL BlastOutputNew PROTO (( void ));
NLM_EXTERN BlastOutputPtr LIBCALL BlastOutputAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL BlastOutputAsnWrite PROTO (( BlastOutputPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* Parameters
*
**************************************************/
typedef struct struct_Parameters {
Uint4 OBbits__;
CharPtr matrix;
FloatHi expect;
#define OB__Parameters_include 0
FloatHi include;
#define OB__Parameters_sc_match 1
Int4 sc_match;
#define OB__Parameters_sc_mismatch 2
Int4 sc_mismatch;
Int4 gap_open;
Int4 gap_extend;
CharPtr filter;
CharPtr pattern;
CharPtr entrez_query;
} Parameters, PNTR ParametersPtr;
NLM_EXTERN ParametersPtr LIBCALL ParametersFree PROTO ((ParametersPtr ));
NLM_EXTERN ParametersPtr LIBCALL ParametersNew PROTO (( void ));
NLM_EXTERN ParametersPtr LIBCALL ParametersAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ParametersAsnWrite PROTO (( ParametersPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* Iteration
*
**************************************************/
typedef struct struct_Iteration {
struct struct_Iteration PNTR next;
Uint4 OBbits__;
Int4 iter_num;
CharPtr query_ID;
CharPtr query_def;
#define OB__Iteration_query_len 0
Int4 query_len;
struct struct_Hit PNTR hits;
struct struct_Statistics PNTR stat;
CharPtr message;
} Iteration, PNTR IterationPtr;
NLM_EXTERN IterationPtr LIBCALL IterationFree PROTO ((IterationPtr ));
NLM_EXTERN IterationPtr LIBCALL IterationNew PROTO (( void ));
NLM_EXTERN IterationPtr LIBCALL IterationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL IterationAsnWrite PROTO (( IterationPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* Statistics
*
**************************************************/
typedef struct struct_Statistics {
Uint4 OBbits__;
Int4 db_num;
Int8 db_len;
Int4 hsp_len;
FloatHi eff_space;
FloatHi kappa;
FloatHi lambda;
FloatHi entropy;
} Statistics, PNTR StatisticsPtr;
NLM_EXTERN StatisticsPtr LIBCALL StatisticsFree PROTO ((StatisticsPtr ));
NLM_EXTERN StatisticsPtr LIBCALL StatisticsNew PROTO (( void ));
NLM_EXTERN StatisticsPtr LIBCALL StatisticsAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL StatisticsAsnWrite PROTO (( StatisticsPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* Hit
*
**************************************************/
typedef struct struct_Hit {
struct struct_Hit PNTR next;
Uint4 OBbits__;
Int4 num;
CharPtr id;
CharPtr def;
CharPtr accession;
Int4 len;
struct struct_Hsp PNTR hsps;
} Hit, PNTR HitPtr;
NLM_EXTERN HitPtr LIBCALL HitFree PROTO ((HitPtr ));
NLM_EXTERN HitPtr LIBCALL HitNew PROTO (( void ));
NLM_EXTERN HitPtr LIBCALL HitAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL HitAsnWrite PROTO (( HitPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* Hsp
*
**************************************************/
typedef struct struct_Hsp {
struct struct_Hsp PNTR next;
Uint4 OBbits__;
Int4 num;
FloatHi bit_score;
FloatHi score;
FloatHi evalue;
Int4 query_from;
Int4 query_to;
Int4 hit_from;
Int4 hit_to;
#define OB__Hsp_pattern_from 0
Int4 pattern_from;
#define OB__Hsp_pattern_to 1
Int4 pattern_to;
#define OB__Hsp_query_frame 2
Int4 query_frame;
#define OB__Hsp_hit_frame 3
Int4 hit_frame;
#define OB__Hsp_identity 4
Int4 identity;
#define OB__Hsp_positive 5
Int4 positive;
#define OB__Hsp_gaps 6
Int4 gaps;
#define OB__Hsp_align_len 7
Int4 align_len;
#define OB__Hsp_density 8
Int4 density;
CharPtr qseq;
CharPtr hseq;
CharPtr midline;
} Hsp, PNTR HspPtr;
NLM_EXTERN HspPtr LIBCALL HspFree PROTO ((HspPtr ));
NLM_EXTERN HspPtr LIBCALL HspNew PROTO (( void ));
NLM_EXTERN HspPtr LIBCALL HspAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL HspAsnWrite PROTO (( HspPtr , AsnIoPtr, AsnTypePtr));
#ifdef __cplusplus
/* { */ }
#endif
#endif /* _bxmlobj_ */
#undef NLM_EXTERN
#ifdef NLM_EXPORT
#define NLM_EXTERN NLM_EXPORT
#else
#define NLM_EXTERN
#endif
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