/usr/include/ncbi/taxutil.h is in libncbi6-dev 6.1.20110713-3ubuntu2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 | #ifndef _TAXUTIL_H_
#define _TAXUTIL_H_ taxutil
/* $Id: taxutil.h,v 6.4 2000/01/12 19:14:19 vakatov Exp $
* ===========================================================================
*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government have not placed any restriction on its use or reproduction.
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* Please cite the author in any work or product based on this material.
*
* ===========================================================================
*
* Author: Vladimir Soussov
*
* File Description:
*
*
* ---------------------------------------------------------------------------
* $Log: taxutil.h,v $
* Revision 6.4 2000/01/12 19:14:19 vakatov
* Get rid of the "new" arg name (C++ keyword)
* Extended extern "C" {} section to include "typedef"s
* Added NCBI copyright header
*
* ===========================================================================
*/
#include <ncbi.h>
#include <asn.h>
#include <sequtil.h>
#include <taxinc.h>
#define MAXIDLIST 50
#ifdef __cplusplus
extern "C" {
#endif
typedef struct taxonomy_block {
Int4 hits;
Taxon1DataPtr tax;
} TaxBlk, PNTR TaxBlkPtr;
typedef struct struct_GeneticCodeList {
Int4 genomic;
Int4 mitochondrial;
} GeneticCodeList, PNTR GeneticCodeListPtr;
void tax_init(void);
Int4 taxname_replace(CharPtr iname, Taxon1DataPtr tdp1);
Int4 taxname_match(CharPtr orgname, Boolean err);
OrgRefPtr check_org_ref(OrgRefPtr orp, Boolean replace);
OrgRefPtr get_tax_org(CharPtr name);
CharPtr get_lineage(CharPtr name);
GeneticCodeListPtr get_gcode(CharPtr name);
GeneticCodeListPtr get_gcode_from_lineage(CharPtr name);
OrgRefPtr replace_org(OrgRefPtr orp, Boolean replace);
OrgRefPtr replace_org_err(OrgRefPtr orp, Boolean replace);
CharPtr get_tax_division(OrgRefPtr orp);
CharPtr get_embl_code(OrgRefPtr orp);
OrgRefPtr check_org_ref(OrgRefPtr orp, Boolean replace);
void GetTaxserverOrg(SeqEntryPtr sep, Pointer data, Int4 index, Int2 indent);
Boolean CheckTaxId(SeqEntryPtr sep);
/* temporary simulant functions for old-new Taxon switch period */
Boolean TaxArchInit(void);
Boolean TaxArchFini(void);
void TaxMergeBSinDescr(SeqEntryPtr sep, Pointer data, Int4 index, Int2 indent);
#ifdef __cplusplus
} /* extern "C" */
#endif
#endif /* _TAXUTIL_H_ */
|