This file is indexed.

/usr/include/shogun/classifier/mkl/MKLMultiClass.h is in libshogun-dev 1.1.0-4ubuntu2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
/*
 * This program is free software; you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation; either version 3 of the License, or
 * (at your option) any later version.
 *
 * Written (W) 2009 Alexander Binder
 * Copyright (C) 2009 Fraunhofer Institute FIRST and Max-Planck-Society
 */

#ifndef MKLMULTICLASS_H_
#define MKLMULTICLASS_H_

#include <vector>

#include <shogun/base/SGObject.h>
#include <shogun/kernel/Kernel.h>  
#include <shogun/kernel/CombinedKernel.h> 
#include <shogun/classifier/svm/GMNPSVM.h>
#include <shogun/classifier/mkl/MKLMultiClassGLPK.h>
#include <shogun/classifier/mkl/MKLMultiClassGradient.h>


namespace shogun
{
/** @brief MKLMultiClass is a class for L1-norm multiclass MKL.
*
*	It is based on the GMNPSVM Multiclass SVM.
*	Its own parameters are the L2 norm weight change based MKL
*	Its termination criterion set by void set_mkl_epsilon(float64_t eps ); and the maximal number of MKL iterations set by void set_max_num_mkliters(int32_t maxnum); It passes the regularization constants C1 and C2 to GMNPSVM.
 */
class CMKLMultiClass : public CMultiClassSVM
{
public:
	/** Class default Constructor
	 * 
	 */
	CMKLMultiClass();
	/** Class Constructor commonly used in Shogun Toolbox
	 * @param C constant C
	 * @param k kernel
	 * @param lab labels
	 */
	CMKLMultiClass(float64_t C, CKernel* k, CLabels* lab);


	/** Class default Destructor
	 * 
	 */
	virtual ~CMKLMultiClass();

	/** get classifier type
	 *
	 * @return classifier type GMNPMKL
	 */
	virtual inline EClassifierType get_classifier_type()
		{ return CT_MKLMULTICLASS; }
	

	/** returns MKL weights for the different kernels
	 *
	 * @param numweights is output parameter, is set to zero if no weights
	 * have been computed or to the number of MKL weights which is equal to the number of kernels
	 * 
	 * @return NULL if no weights have been computed or otherwise an array
	 * with the weights, caller has to SG_FREE() the output
	 */
	float64_t* getsubkernelweights(int32_t & numweights);
	
	/** sets MKL termination threshold
	 *
	 * @param eps is the desired threshold value
	 * the termination criterion is the L2 norm between the current MKL weights
	 *  and their counterpart from the previous iteration
	 * 
	 */
	void set_mkl_epsilon(float64_t eps ); 

	/** sets maximal number of MKL iterations
	 *
	 * @param maxnum is the desired maximal number of MKL iterations; when it
	 *  is reached the MKL terminates irrespective of the MKL progress
	 * set it to a nonpositive value in order to turn it off
	 * 
	 */
	void set_max_num_mkliters(int32_t maxnum);

	/** set mkl norm
	 * @param norm
	 */
	virtual void set_mkl_norm(float64_t norm);

	
protected:
	/** Class Copy Constructor
	 * protected to avoid its usage 
	 * 
	 */
	CMKLMultiClass( const CMKLMultiClass & cm);
	/** Class Assignment operator
	 * protected to avoid its usage
	 * 
	 */
	CMKLMultiClass operator=( const CMKLMultiClass & cm);

	/** performs some sanity checks (on the provided kernel), inits the
	 * GLPK-based LP solver
	 * 
	 */
	void initlpsolver();

	/** inits the underlying Multiclass SVM
	 * 
	 */
	void initsvm();
	


	
	/** checks MKL for convergence
	 *
	 * @param numberofsilpiterations is the number of currently done iterations
	 * 
	 */
	virtual bool evaluatefinishcriterion(const int32_t
			numberofsilpiterations);
	

	/** adds a constraint to the LP used in MKL
	 *
	 * @param curweights are the current MKL weights
	 *
	 * it uses 
	 * void addingweightsstep( const std::vector<float64_t> & curweights);
	 * and 
	 * float64_t getsumofsignfreealphas();
	 */
	void addingweightsstep( const std::vector<float64_t> & curweights);
	/** computes the first svm-dependent part used for generating MKL constraints
	 * it is
	 * \f$ \sum_y b_y^2-\sum_i \sum_{ y | y \neq y_i} \alpha_{iy}(b_{y_i}-b_y-1) \f$
	 */
	float64_t getsumofsignfreealphas();
	/** computes the second svm-dependent part used for generating MKL
	 * constraints
	 *
	 * @param ind is the index of the kernel for which
	 * to compute \f$ \|w \|^2  \f$
	 */
	float64_t getsquarenormofprimalcoefficients(
			const int32_t ind);
	

	/** train Multiclass MKL classifier
	 *
	 * @param data training data (parameter can be avoided if distance or
	 * kernel-based classifiers are used and distance/kernels are
	 * initialized with train data)
	 *
	 * @return whether training was successful
	 */
	virtual bool train_machine(CFeatures* data=NULL);
	

protected:
	/** the multiclass svm for fixed MKL weights
	*
	*
	*/	
	CGMNPSVM* svm;
	/** the solver wrapper
	*	
	*/
	MKLMultiClassOptimizationBase* lpw; 
	/** stores the last two mkl iteration weights 
	*	
	*/
	::std::vector< std::vector< float64_t> > weightshistory;

	/** MKL termination threshold
	*	is set void set_mkl_epsilon(float64_t eps ); 
	*/
	float64_t mkl_eps; 
	/** maximal number of MKL iterations
	*	is set by void set_max_num_mkliters(int32_t maxnum);
	*/
	int32_t max_num_mkl_iters; 
	/** MKL norm >=1
	*   
	*/
	float64_t pnorm;
	/** stores the term  \| w_l \|^2 ~~~ "alpha o Y K_l Y o alpha"
	*   
	*/
	std::vector<float64_t> normweightssquared;
	
};
}
#endif // GMNPMKL_H_