/usr/include/squizz/align.h is in libsquizz-dev 0.99a-2.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 | /* align.h - Generic alignment functions */
#ifndef __ALIGN_H_
#define __ALIGN_H_
#include <stdio.h>
#include "sequence.h"
/* Types definitions */
typedef struct {
sequence_t **cur;
sequence_t **seq;
char *_tmp;
} align_t;
typedef enum {
ALIFMT_UNKWN, ALIFMT_CLUSTAL, ALIFMT_PHYLIPI, ALIFMT_PHYLIPS,
ALIFMT_FASTA, ALIFMT_MEGA, ALIFMT_MSF, ALIFMT_NEXUSI, ALIFMT_STOCK,
ALIFMT_NONE } alifmt_t;
/* Functions prototypes */
align_t *align_new(void);
void align_free(align_t *);
int align_check(FILE *, alifmt_t);
align_t *align_parse(FILE *, alifmt_t);
int align_strict(align_t *);
void align_print(FILE *, align_t *, alifmt_t);
alifmt_t align_format(FILE *);
#endif /* __ALIGN_H_ */
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