/usr/bin/xfmflip

#! /usr/bin/env perl
#
# Andrew Janke - a.janke@gmail.com
#
# Copyright Andrew Janke, The University of Queensland.
# Permission to use, copy, modify, and distribute this software and its
# documentation for any purpose and without fee is hereby granted,
# provided that the above copyright notice appear in all copies.
# The author and the University make no representations about the
# suitability of this software for any purpose.  It is provided "as is"
# without express or implied warranty.
#
# Flips an xfm in the given direction


use strict;
use warnings "all";
use Getopt::Tabular;
use File::Basename;
use File::Temp qw/ tempdir /;


my($Help, $Usage, $me, @opt_table, $tmpdir, $history, %opt);
my(@args, $inxfm, $outxfm);

# Argument variables and table
$me = &basename($0);
$tmpdir = "/tmp/$me-$$";
%opt = (
   'verbose' => 0,
   'clobber' => 0,
   'fake' => 0,
   'todo' => 0,
   );

$Help = <<HELP;
| $me is designed to flip a .xfm file in a given direction
|    This can done in either the coronal, sagittal or 
|    transverse plane.
|
| Thanks to Vladimir Fonov for pointing out that I was 
|    was making things somewhat hard for myself and
|    suggesting a slightly more abridged version..
|
| Problems or comments should be sent to: a.janke\@gmail.com
HELP

$Usage = "Usage: $me [options] <in.xfm> <out.xfm>\n".
         "       $me -help to list options\n\n";

@opt_table = (
   ["General Options", "section" ],
   ["-version", "call", 0, \&print_version_info,
      "print version and exit" ],
   ["-verbose", "boolean", 0, \$opt{verbose},
      "be verbose"],
   ["-clobber", "boolean", 0, \$opt{clobber},
      "clobber existing files"],
   ["-fake", "boolean", 0, \$opt{fake},
      "do a dry run, (echo cmds only)" ],
      
   ["Flipping Options", "section" ],
   ["-x", "const", '0', \$opt{todo}, 
      "flip xfm in x (default)" ],
   ["-y", "const", '1', \$opt{todo}, 
      "flip xfm in y" ],
   ["-z", "const", '2', \$opt{todo}, 
      "flip xfm in z" ],
   );

# get history string
chomp($history = `date`);
$history .= '>>>> ' . join(' ', $me, @ARGV);

# check arguments
&Getopt::Tabular::SetHelp($Help, $Usage);
&GetOptions (\@opt_table, \@ARGV) || exit 1;
die $Usage if ($#ARGV < 1);
$inxfm = $ARGV[0];
$outxfm = $ARGV[1];

# check for the input and output xfm
die "$me: Couldn't find $inxfm\n" if (!-e $inxfm);
die "$me: $outxfm exists! use -clobber to overwrite\n" if (-e $outxfm && !$opt{'clobber'});

# make tmpdir
$tmpdir = &tempdir( "$me-XXXXXXXX", TMPDIR => 1, CLEANUP => 1 );

my @flips = (
   [-1,  1,  1], 
   [ 1, -1,  1], 
   [ 1,  1, -1]
   );

# generate a temporary flip xfm
&do_cmd('param2xfm', '-clobber', 
        '-center', 0, 0, 0,
        '-scales', @{$flips[$opt{todo}]},
        "$tmpdir/flip.xfm");

# create the flip xfm
&do_cmd('xfmconcat', 
        "$tmpdir/flip.xfm", $inxfm, "$tmpdir/flip.xfm",
        $outxfm);


# do the dogy and add a history string (this may well bite me later on)
my @buf = split("\n", `cat $outxfm`);
open(FH, ">$outxfm");

print FH shift(@buf) . "\n" .
         "%\n" .
         "% Created by $me\n" .
         "%\n" .
         "% $history \n" .
         "\n" .
         join("\n", @buf) . "\n";
close(FH);

sub do_cmd { 
   print STDOUT "@_\n" if $opt{verbose};
   if(!$opt{fake}){
      system(@_) == 0 or die;
      }
   }
   
sub print_version_info {
   my($package, $version, $package_bugreport);

   $package = 'minc';
   $version = '2.1.00';
   $package_bugreport = 'Andrew Janke <a.janke@gmail.com>';

   print STDOUT "\n$package version $version\n".
                "Comments to $package_bugreport\n\n";
   exit;
   }
minc-tools 2.1.00-2 / usr / bin / xfmflip
