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The actual contents of the file can be viewed below.

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/usr/share/pdb2pqr/pdb2pqr.py
/usr/share/pdb2pqr/main.py
/usr/share/pdb2pqr/main_cgi.py
/usr/share/pdb2pqr/propka/__init__.py
/usr/share/pdb2pqr/propka/propkalib.py
/usr/share/pdb2pqr/extensions/phi.py
/usr/share/pdb2pqr/extensions/salt.py
/usr/share/pdb2pqr/extensions/hbondwhatif.py
/usr/share/pdb2pqr/extensions/psi.py
/usr/share/pdb2pqr/extensions/chi.py
/usr/share/pdb2pqr/extensions/rama.py
/usr/share/pdb2pqr/extensions/contact.py
/usr/share/pdb2pqr/extensions/__init__.py
/usr/share/pdb2pqr/extensions/hbond.py
/usr/share/pdb2pqr/pdb2pka/pKa_utility_functions_compat.py
/usr/share/pdb2pqr/pdb2pka/pka_routines.py
/usr/share/pdb2pqr/pdb2pka/NEWligand_topology.py
/usr/share/pdb2pqr/pdb2pka/pka.py
/usr/share/pdb2pqr/pdb2pka/pka_help.py
/usr/share/pdb2pqr/pdb2pka/apbs.py
/usr/share/pdb2pqr/pdb2pka/ligand_topology.py
/usr/share/pdb2pqr/pdb2pka/example.py
/usr/share/pdb2pqr/pdb2pka/pKaIO_compat.py
/usr/share/pdb2pqr/pdb2pka/pMC_mult.py
/usr/share/pdb2pqr/pdb2pka/inputgen_pKa.py
/usr/share/pdb2pqr/pdb2pka/__init__.py
/usr/share/pdb2pqr/pdb2pka/charge_mon.py
/usr/share/pdb2pqr/pdb2pka/pKa_base.py
/usr/share/pdb2pqr/pdb2pka/substruct/__init__.py
/usr/share/pdb2pqr/pdb2pka/ligandclean/templates.py
/usr/share/pdb2pqr/pdb2pka/ligandclean/trial_templates.py
/usr/share/pdb2pqr/pdb2pka/ligandclean/ligff.py
/usr/share/pdb2pqr/pdb2pka/ligandclean/lookuptable.py
/usr/share/pdb2pqr/pdb2pka/ligandclean/__init__.py
/usr/share/pdb2pqr/pdb2pka/ligandclean/peoe_PDB2PQR.py
/usr/share/pdb2pqr/src/psize.py
/usr/share/pdb2pqr/src/aa.py
/usr/share/pdb2pqr/src/definitions.py
/usr/share/pdb2pqr/src/quatfit.py
/usr/share/pdb2pqr/src/structures.py
/usr/share/pdb2pqr/src/routines.py
/usr/share/pdb2pqr/src/inputgen.py
/usr/share/pdb2pqr/src/hydrogens.py
/usr/share/pdb2pqr/src/topology.py
/usr/share/pdb2pqr/src/pdb.py
/usr/share/pdb2pqr/src/aconf.py
/usr/share/pdb2pqr/src/forcefield.py
/usr/share/pdb2pqr/src/__init__.py
/usr/share/pdb2pqr/src/protein.py
/usr/share/pdb2pqr/src/server.py
/usr/share/pdb2pqr/src/utilities.py
/usr/share/pdb2pqr/src/na.py