propka 1.7-2 / usr / share / doc / propka / copyright

This package was debianized by Steffen Moeller <moeller@debian.org> on Thu, 20 Dec 2007 16:27:31 +0100.

It was downloaded from http://sourceforge.net/projects/pdb2pqr/.

Copies of NumPy, ZSI and JMol were removed from the tarball, originally found
in the contrib/ and jmol/ directories. See also the get-orig-source target in
debian/rules.

Copyrights: 

  Copyright © 2002-2010  Nathan A. Baker
  Copyright © 2009       Tommy Carstensen
  Copyright © 2004       becker
  Copyright © 2006       Mike Bradley
  Copyright © 1999-2004  Cambridge Crystallographic Data Centre
  Copyright © 2009       Tommy Carstensen
  Copyright © 2002-2010  Paul Czodrowski
  Copyright ©            Andrew Dalke <dalke@bioreason.com>
  Copyright © 2005-2010  Todd Dolinsky
  Copyright © 2000       EMBL
  Copyright © 1992-2008  Free Software Foundation, Inc.
  Copyright © 1993       Noah Friedman <friedman@prep.ai.mit.edu>
  Copyright © 2010       Wes Goodman
  Copyright © 2010       Bob Hanson (JMol code, removed)
  Copyright ©            David J. Heisterberg
  Copyright © 1994-2000  Michael Holst
  Copyright © 2007-2010  Yong Huang
  Copyright © 2004-2005  Hui Li
  Copyright © 2005,2010  Jan H. Jensen
  Copyright © 2000-2010  Gerhard Klebe
  Copyright © 2000-2004  Daniel Kuhn
  Copyright © 2010       Predrag Kukic (kukaq)
  Copyright © 2006       Jan Labanowski
  Copyright © 1991       Massachusetts Institute of Technology
  Copyright © 2007       Julie C. Mitchell
  Copyright © 2002-2010  Jens Erik Nielsen
  Copyright ©            The Ohio Supercomputer Center, Columbus
  Copyright © 2004       Philipps-University, Marburg
  Copyright ©            J. Ren
  Copyright © 2000-2004  Stefan Schmitt
  Copyright © 2008       Dave Sept
  Copyright © 2002-2003  UCSD/HHMI
  Copyright © 2003-2008  University College Dublin
  Copyright © 2007-2010  Samir Unni
  Copyright © 2004-2007  Washington University St. Louis
  Copyright © 2004       Nils Weskamp

Licenses:

  PDB2PQR [BSD 3-clause]:

    All rights reserved.

    Redistribution and use in source and binary forms, with or without modification, 
    are permitted provided that the following conditions are met:

        * Redistributions of source code must retain the above copyright notice, 
          this list of conditions and the following disclaimer.
        * Redistributions in binary form must reproduce the above copyright notice, 
          this list of conditions and the following disclaimer in the documentation 
          and/or other materials provided with the distribution.
        * Neither the names of University College Dublin, Washington University in 
          St. Louis, or University of Marburg nor the names of its contributors may 
          be used to endorse or promote products derived from this software without 
          specific prior written permission.

    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND 
    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED 
    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. 
    IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, 
    INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, 
    BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, 
    DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF 
    LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE 
    OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED 
    OF THE POSSIBILITY OF SUCH DAMAGE.

  PropKa [BSD 3-clause] (Files under ./propka/):

    PROPKA USER LICENSE AGREEMENT

    PropKa: a program for protein pKa predictions 
    Copyright (c) 2005, Jan H. Jensen and Hui Li

    All rights reserved.
     
    Redistribution and use in source and binary forms, with or without 
    modification, are permitted provided that the following conditions 
    are met:

    * Redistributions of source code must retain the above copyright
      notice, this list of conditions and the following disclaimer.
    * Redistributions in binary form must reproduce the above copyright
      notice, this list of conditions and the following disclaimer in the
      documentation and/or other materials provided with the distribution.
    * Neither the name of the University of Copenhagen nor the names of its
      contributors may be used to endorse or promote products derived from 
      this software without specific prior written permission.

    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
    "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
    LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
    A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT 
    OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, 
    SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED 
    TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
    PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
    LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
    NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
    SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

  Clique [LGPL-2]: (Files under ./pdb2pka/substruct/clique/)

    This library is free software; you can redistribute it and/or
    modify it under the terms of the GNU Library General Public
    License as published by the Free Software Foundation; either
    version 2 of the License, or (at your option) any later version.

    This library is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
    Library General Public License for more details.

   On Debian systems, the complete text of the GNU Library General Public License
   can be found in /usr/share/common-licenses/LGPL-2.

  mkinstalldirs [Public Domain]: (Files **/config/mkinstalldirs)


The Debian packaging is © 2007-2010  Manuel Prinz <manuel@debian.org>
and Steffen Moeller <moeller@debian.org> and is licensed under the GPL,
see `/usr/share/common-licenses/GPL'.