/usr/share/pyshared/Bio/Phylo/ is in python-biopython 1.58-1.
This file is owned by root:root, with mode 0o755.
..
/usr/share/pyshared/Bio/Phylo/Applications/
/usr/share/pyshared/Bio/Phylo/Applications/_Phyml.py
/usr/share/pyshared/Bio/Phylo/Applications/__init__.py
/usr/share/pyshared/Bio/Phylo/BaseTree.py
/usr/share/pyshared/Bio/Phylo/Newick.py
/usr/share/pyshared/Bio/Phylo/NewickIO.py
/usr/share/pyshared/Bio/Phylo/NexusIO.py
/usr/share/pyshared/Bio/Phylo/PAML/
/usr/share/pyshared/Bio/Phylo/PAML/__init__.py
/usr/share/pyshared/Bio/Phylo/PAML/_paml.py
/usr/share/pyshared/Bio/Phylo/PAML/_parse_baseml.py
/usr/share/pyshared/Bio/Phylo/PAML/_parse_codeml.py
/usr/share/pyshared/Bio/Phylo/PAML/_parse_yn00.py
/usr/share/pyshared/Bio/Phylo/PAML/baseml.py
/usr/share/pyshared/Bio/Phylo/PAML/chi2.py
/usr/share/pyshared/Bio/Phylo/PAML/codeml.py
/usr/share/pyshared/Bio/Phylo/PAML/yn00.py
/usr/share/pyshared/Bio/Phylo/PhyloXML.py
/usr/share/pyshared/Bio/Phylo/PhyloXMLIO.py
/usr/share/pyshared/Bio/Phylo/__init__.py
/usr/share/pyshared/Bio/Phylo/_io.py
/usr/share/pyshared/Bio/Phylo/_sugar.py
/usr/share/pyshared/Bio/Phylo/_utils.py