/usr/lib/python2.7/dist-packages/cogent/align/ is in python-cogent 1.5.1-2.
This file is owned by root:root, with mode 0o755.
..
/usr/lib/python2.7/dist-packages/cogent/align/__init__.py
/usr/lib/python2.7/dist-packages/cogent/align/_compare.so
/usr/lib/python2.7/dist-packages/cogent/align/_pairwise_pogs.so
/usr/lib/python2.7/dist-packages/cogent/align/_pairwise_seqs.so
/usr/lib/python2.7/dist-packages/cogent/align/algorithm.py
/usr/lib/python2.7/dist-packages/cogent/align/align.py
/usr/lib/python2.7/dist-packages/cogent/align/dp_calculation.py
/usr/lib/python2.7/dist-packages/cogent/align/indel_model.py
/usr/lib/python2.7/dist-packages/cogent/align/indel_positions.py
/usr/lib/python2.7/dist-packages/cogent/align/pairwise.py
/usr/lib/python2.7/dist-packages/cogent/align/partial_order_graph.py
/usr/lib/python2.7/dist-packages/cogent/align/progressive.py
/usr/lib/python2.7/dist-packages/cogent/align/pycompare.py
/usr/lib/python2.7/dist-packages/cogent/align/traceback.py
/usr/lib/python2.7/dist-packages/cogent/align/weights/
/usr/lib/python2.7/dist-packages/cogent/align/weights/__init__.py
/usr/lib/python2.7/dist-packages/cogent/align/weights/methods.py
/usr/lib/python2.7/dist-packages/cogent/align/weights/util.py