This file is indexed.

/usr/share/pyshared/rdkit/TestRunner.py is in python-rdkit 201106+dfsg-1build1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
#  $Id: TestRunner.py 1528 2010-09-26 17:04:37Z glandrum $
#
#  Copyright (c) 2003-2010 Greg Landrum and Rational Discovery LLC
#
#   @@ All Rights Reserved @@
#  This file is part of the RDKit.
#  The contents are covered by the terms of the BSD license
#  which is included in the file license.txt, found at the root
#  of the RDKit source tree.
#
from rdkit import RDConfig
import os,sys,time
if sys.version_info[0]>2 or sys.version_info[1]>4:
  import subprocess
else:
  subprocess=None

TEST_FAILED=-1
TEST_PASSED=0

def RunTest(exeName,args,extras):
  if exeName=="python":
    exeName=RDConfig.pythonExe
  args = args.split(' ')  

  startDir = os.getcwd()
  if extras.has_key('dir'):
    os.chdir(extras['dir'])
  expectedReturn = extras.get('returns',0)
  if not subprocess:
    raise NotImplementedError,'cannot run tests if the subprocess module is not available.'
  else:
    try:
      retVal = subprocess.call([exeName]+list(args))
    except OSError:
      print >>sys.stderr,"Could not find executable: %s."%exeName
      return TEST_FAILED
  if extras.has_key('dir'):
    os.chdir(startDir)
  if retVal!=expectedReturn:
    return TEST_FAILED
  else:
    return TEST_PASSED

def RunScript(script,doLongTests,verbose):
  if len(sys.argv)==3 and sys.argv[1]=='--testDir':
    os.chdir(sys.argv[2])
  # -------------------------------------------------------
  # this is pretty funny.  Whatever directory we started python in
  # will be in the search path, and if we've changed to another
  # directory, that'll be there too.  HOWEVER... the starting
  # directory will be searched first (at least in python2.2), so we
  # need to make sure that '.' is at the front of the search path
  if sys.path[0] != '.':
    sys.path = ['.']+sys.path
  script = script.split('.py')[0]
  mod = __import__(script)
  try:
    tests = mod.tests
  except AttributeError:
    return [],0
    
  longTests = []
  if doLongTests:
    try:
      longTests = mod.longTests
    except AttributeError:
      pass

  failed = []
  for entry in tests:
    try:
      exeName,args,extras  = entry
    except ValueError:
      print 'bad entry:',entry
      sys.exit(-1)
    try:
      res = RunTest(exeName,args,extras)
    except:
      import traceback
      traceback.print_exc()
      res = TEST_FAILED
    if res != TEST_PASSED:
      failed.append((exeName,args,extras))
  for exeName,args,extras in longTests:
    res = RunTest(exeName,args,extras)
    if res != TEST_PASSED:
      failed.append((exeName,args,extras))
  
  nTests = len(tests)+len(longTests)
  del sys.modules[script]
  return failed,nTests
  
def ReportResults(script,failedTests,nTests,runTime,verbose,dest):
  if not nTests:
    dest.write('!-!-!-!-!-!-!-!-!-!-!\n')
    dest.write('\tScript: %s.  No tests run!\n'%(script))
  elif not len(failedTests):
    dest.write('-----------------\n')
    dest.write('\tScript: %s.  Passed %d tests in %.2f seconds\n'%(script,nTests,runTime))
  else:
    dest.write('!-!-!-!-!-!-!-!-!-!-!\n')
    dest.write('\tScript: %s.  Failed %d (of %d) tests in %.2f seconds\n'%(script,len(failedTests),nTests,runTime))
    if verbose:
      for exeName,args,extras in failedTests:
        dirName = extras.get('dir','.')
        dirName = os.path.abspath(dirName)
        dest.write('\t\t(%s): %s %s\n'%(dirName,exeName,args))

  
if __name__=='__main__':
  import getopt
  args,extras = getopt.getopt(sys.argv[1:],'lv')
  doLongTests = 0
  verbose = 1
  for arg,val in args:
    if arg == '-l':
      doLongTests=1
    elif arg == '-v':
      verbose=0
  
  pwd = os.getcwd()
  totNumFailed=0
  totNumRun=0
  failures = []
  timeAccum = 0.0
  for script in extras:
    try:
      open(script,'r')
    except IOError:
      sys.stderr.write('ERROR: Test script %s could not be opened.\n'%(script))
    else:
      dirName = os.path.dirname(script)
      scriptBase = os.path.basename(script)
      if dirName:
        os.chdir(dirName)
      try:
        t1 = time.time()
        failed,nTests=RunScript(scriptBase,doLongTests,verbose)
        t2 = time.time()
      except ImportError:
        import traceback
        traceback.print_exc()
        sys.stderr.write('ERROR: Could not import test script %s\n'%(script))
      else:
        runTime = t2-t1
        ReportResults(script,failed,nTests,runTime,verbose,sys.stderr)
        timeAccum += runTime
      if dirName:
        os.chdir(pwd)
      if len(extras)>1:
        totNumFailed += len(failed)
        totNumRun += nTests
        if len(failed):
          failures.append(script)

  if len(extras)>1:
    sys.stderr.write('\n\n-*-*-*-*-*-*- Test Results Summary -*-*-*-*-*-*-\n')
    sys.stderr.write('\t\tTotal run time: %.2f seconds\n'%(timeAccum))
    if totNumFailed:
      sys.stderr.write('!!!!!---  %d Failures in %d tests  ---!!!!!\n'%(totNumFailed,totNumRun))
      sys.stderr.write('\tModules with failures:\n')
      for failure in failures:
        sys.stderr.write('\t\t%s\n'%failure)
    else:
      sys.stderr.write('  All %d tests (in %d modules) passed\n'%(totNumRun,len(extras)))