/usr/lib/R/site-library/VGAM/INDEX is in r-cran-vgam 0.8-4-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 | AA.Aa.aa The AA-Aa-aa Blood Group System
AB.Ab.aB.ab The AB-Ab-aB-ab Blood Group System
AB.Ab.aB.ab2 The AB-Ab-aB-ab2 Blood Group System
ABO The ABO Blood Group System
AICvlm Akaike's Information Criterion
Amh Ali-Mikhail-Haq Distribution's Bivariate
Distribution
Benford Benford's Distribution
Benini The Benini Distribution
Betabinom The Beta-Binomial Distribution
Betageom The Beta-Geometric Distribution
Betanorm The Beta-Normal Distribution
Binom2.or Bivariate Binary Regression with an Odds Ratio
Binom2.rho Bivariate Probit Model
Bisa The Birnbaum-Saunders Distribution
Bort The Borel-Tanner Distribution
Brat Inputting Data to fit a Bradley Terry Model
Card Cardioid Distribution
Coef Computes Model Coefficients and Quantities
Coef.qrrvglm Returns Important Matrices etc. of a QO Object
Coef.qrrvglm-class Class "Coef.qrrvglm"
Coef.rrvglm Returns Important Matrices etc. of a RR-VGLM
Object
Coef.rrvglm-class Class "Coef.rrvglm"
Coef.vlm Extract Model Coefficients for VLM Objects
CommonVGAMffArguments Common VGAM family function Arguments
Dagum The Dagum Distribution
DeLury DeLury's Method for Population Size Estimation
Expectiles-Exponential
Expectiles of the Exponential Distribution
Expectiles-Koenker Expectiles/Quantiles of the Koenker
Distribution
Expectiles-Normal Expectiles of the Normal Distribution
Expectiles-Uniform Expectiles of the Uniform Distribution
Felix The Felix Distribution
Fgm Farlie-Gumbel-Morgenstern's Bivariate
Distribution
Fisk The Fisk Distribution
Fnorm The Folded-Normal Distribution
Frank Frank's Bivariate Distribution
Frechet The Frechet Distribution
G1G2G3 The G1G2G3 Blood Group System
Hzeta Haight's Zeta Function
Inv.gaussian The Inverse Gaussian Distribution
Invlomax The Inverse Lomax Distribution
Invparalogistic The Inverse Paralogistic Distribution
Kumar The Kumaraswamy Distribution
Links Link functions for VGLM/VGAM/etc. families
Lino The Generalized Beta Distribution (Libby and
Novick, 1982)
Log Logarithmic Distribution
Lomax The Lomax Distribution
MNSs The MNSs Blood Group System
Max Maxima
Maxwell The Maxwell Distribution
Nakagami Nakagami Distribution
Opt Maxima
Paralogistic The Paralogistic Distribution
Pareto The Pareto Distribution
ParetoIV The Pareto(IV/III/II) Distributions
Plackett Plackett's Bivariate Distribution
Polono The Poisson Lognormal Distribution
Posbinom Positive-Binomial Distribution
Posnegbin Positive-Negative Binomial Distribution
Posnorm The Positive-Normal Distribution
Pospois Positive-Poisson Distribution
Qvar Quasi-variances Preprocessing Function
Rayleigh The Rayleigh Distribution
Rcam Mark the Baseline of Row and Column on a Matrix
data
Rice The Rice Distribution
Sinmad The Singh-Maddala Distribution
Skellam The Skellam Distribution
Slash Slash Distribution
SurvS4 Create a Survival Object
SurvS4-class Class "SurvS4"
Tikuv A Short-tailed Symmetric Distribution
Tobit The Tobit Distribution
Tol Tolerances
Tpareto The Truncated Pareto Distribution
Triangle The Triangle Distribution
VGAM-package Vector Generalized Linear and Additive Models
Yules Yule-Simon Distribution
Zanegbin Zero-Altered Negative Binomial Distribution
Zapois Zero-Altered Poisson Distribution
Zeta The Zeta Distribution
Zibinom Zero-Inflated Binomial Distribution
Zigeom Zero-Inflated Geometric Distribution
Zinegbin Zero-Inflated Negative Binomial Distribution
Zipf The Zipf Distribution
Zipois Zero-Inflated Poisson Distribution
acat Ordinal Regression with Adjacent Categories
Probabilities
alaplace1 Asymmetric Laplace Distribution Family
Functions
amh Ali-Mikhail-Haq Distribution Distribution
Family Function
amlbinomial Binomial Logistic Regression by Asymmetric
Maximum Likelihood Estimation
amlexponential Exponential Regression by Asymmetric Maximum
Likelihood Estimation
amlnormal Asymmetric Least Squares Quantile Regression
amlpoisson Poisson Regression by Asymmetric Maximum
Likelihood Estimation
auuc Auckland University Undergraduate Counts Data
backPain Data on Back Pain Prognosis, from Anderson
(1984)
benini Benini Distribution Family Function
beta.ab The Two-parameter Beta Distribution Family
Function
betaII Beta Distribution of the Second Kind
betabinomial Beta-binomial Distribution Family Function
betabinomial.ab Beta-binomial Distribution Family Function
betaff The Two-parameter Beta Distribution Family
Function
betageometric Beta-geometric Distribution Family Function
betaprime The Beta-Prime Distribution
bilogis4 Bivariate Logistic Distribution
bilogistic4 Bivariate Logistic Distribution Family Function
binom2.or Bivariate Binary Regression with an Odds Ratio
(Family Function)
binom2.rho Bivariate Probit Model (Family Function)
binomialff Binomial Family Function
binormal Bivariate normal distribution
biplot,rrvglm-method Biplot of Constrained Regression Models
bisa Birnbaum-Saunders Distribution Family Function
bivgamma.mckay Bivariate Gamma: McKay's Distribution
bminz Body Mass Index of New Zealand Adults Data
borel.tanner Borel-Tanner Distribution Family Function
brat Bradley Terry Model
bratt Bradley Terry Model With Ties
calibrate Model Calibrations
calibrate,rrvglm-method
Calibration for Constrained Regression Models
calibrate.qrrvglm Calibration for CQO, UQO and CAO models
calibrate.qrrvglm.control
Control function for CQO/UQO/CAO calibration
cao Fitting Constrained Additive Ordination (CAO)
cao.control Control Function for RR-VGAMs (CAO)
cardioid Cardioid Distribution Family Function
cauchit Cauchit Link Function
cauchy Cauchy Distribution Family Function
ccoef Extract Model Constrained/Canonical
Coefficients
ccoef-method Constrained (Canonical) Coefficients
cdf.lmscreg Cumulative Distribution Function for LMS
Quantile Regression
cennormal1 Censored Normal Distribution
cenpoisson Censored Poisson Family Function
cgo Redirects the user to cqo
cgumbel Censored Gumbel Distribution
chestnz Chest Pain in NZ Adults Data
chisq Chi-squared Distribution
clo Redirects the user to rrvglm
cloglog Complementary Log-log Link Function
coalminers Breathlessness and Wheeze Amongst Coalminers
Data
constraints Constraint Matrices
cqo Fitting Constrained Quadratic Ordination (CQO)
crashi Crashes on New Zealand Roads in 2009
cratio Ordinal Regression with Continuation Ratios
cumulative Ordinal Regression with Cumulative
Probabilities
dagum Dagum Distribution Family Function
dalap The Laplace Distribution
dcennormal1 Univariate Normal Distribution with Double
Censoring
deplot.lmscreg Density Plot for LMS Quantile Regression
depvar Response variable extracted
dexpbinomial Double Exponential Binomial Distribution Family
Function
dgumbel The Gumbel Distribution
dhuber Huber's least favourable distribution
dirichlet Fitting a Dirichlet Distribution
dirmul.old Fitting a Dirichlet-Multinomial Distribution
dirmultinomial Fitting a Dirichlet-Multinomial Distribution
dlaplace The Laplace Distribution
dloglap The Log-Laplace Distribution
dsimplex Simplex Distribution
enzyme Enzyme Data
erf Error Function
erlang Erlang Distribution
expexp Exponentiated Exponential Distribution
expexp1 Exponentiated Exponential Distribution
expgeom The Exponential Geometric Distribution
expgeometric Exponential Geometric Distribution Family
Function
explink Exponential Link Function
explog The Exponential Logarithmic Distribution
explogarithmic Exponential Logarithmic Distribution Family
Function
exponential Exponential Distribution
exppois The Exponential Poisson Distribution
exppoisson Exponential Poisson Distribution Family
Function
felix Felix Distribution Family Function
fff F Distribution Family Function
fgm Farlie-Gumbel-Morgenstern's Bivariate
Distribution Family Function
fill Creates a Matrix of Appropriate Dimension
finney44 Toxicity trial for insects
fisherz Fisher's Z Link Function
fisk Fisk Distribution family function
fittedvlm Fitted Values of a VLM object
fnormal1 Folded Normal Distribution Family Function
frank Frank's Bivariate Distribution Family Function
frechet2 Frechet Distribution Family Function
freund61 Freund's (1961) Bivariate Extension of the
Exponential Distribution
fsqrt Folded Square Root Link Function
gamma1 1-parameter Gamma Distribution
gamma2 2-parameter Gamma Distribution
gamma2.ab 2-parameter Gamma Distribution
gammahyp Gamma Hyperbola Bivariate Distribution
garma GARMA (Generalized Autoregressive
Moving-Average) Models
gaussianff Gaussian (normal) Family Function
genbetaII Generalized Beta Distribution of the Second
Kind
gengamma Generalized Gamma distribution family function
gengammaUC The Generalized Gamma Distribution
genpoisson Generalized Poisson distribution
genray The Generalized Rayleigh Distribution
genrayleigh Generalized Rayleigh Distribution Family
Function
geometric Geometric Distribution
get.smart Retrieve One Component of ".smart.prediction"
get.smart.prediction Retrieves ".smart.prediction"
gev Generalized Extreme Value Distribution Family
Function
gevUC The Generalized Extreme Value Distribution
gew General Electric and Westinghouse Data
golf Gamma-Ordinal Link Function
gpd Generalized Pareto Distribution Family Function
gpdUC The Generalized Pareto Distribution
grc Row-Column Association Models including
Goodman's RC Association Model
gumbel Gumbel Distribution Family Function
gumbelIbiv Gumbel's Type I Bivariate Distribution Family
Function
guplot Gumbel Plot
hspider Hunting Spider Data
huber Huber's least favourable distribution family
function
hued Harvard University Degrees Conferred by Student
Ethnicity
huggins91 Huggins (1991) Capture-recapture Model Family
Function (approximation only)
huggins91UC Huggins (1991) Capture-recapture Model
huie Harvard University International Enrollments
hunua Hunua Ranges Data
huse Harvard University Numbers of Ladder Faculty by
School and Ethnicity
hyperg Hypergeometric Family Function
hypersecant Hyperbolic Secant Distribution Family Function
hzeta Haight's Zeta Family Function
iam Index from Array to Matrix
identity Identity Link Function
inv.gaussianff Inverse Gaussian Distribution Family Function
invbinomial Inverse Binomial Distribution Family Function
invlomax Inverse Lomax Distribution Family Function
invparalogistic Inverse Paralogistic Distribution Family
Function
is.smart Test For a Smart Object
koenker Koenker's Distribution Family Function
kumar Kumaraswamy Distribution Family Function
lambertW The Lambert W function
laplace Laplace Distribution
leipnik Leipnik Distribution Family Function
lerch Lerch Phi Function
leukemia Acute Myelogenous Leukemia Survival Data
levy Levy Distribution Family Function
lgammaUC The Log-Gamma Distribution
lgammaff Log-gamma Distribution Family Function
lino Generalized Beta Distribution Family Function
lirat Low-iron Rat Teratology Data
lms.bcg LMS Quantile Regression with a Box-Cox
transformation to a Gamma Distribution
lms.bcn LMS Quantile/Expectile Regression with a
Box-Cox Transformation to Normality
lms.yjn LMS Quantile Regression with a Yeo-Johnson
Transformation to Normality
logc Complementary-log Link Function
loge Log link function
logff Logarithmic Distribution
logistic Logistic Distribution Family Function
logit Logit Link Function
loglaplace1 Log-Laplace and Logit-Laplace Distribution
Family Functions
loglinb2 Loglinear Model for Two Binary Responses
loglinb3 Loglinear Model for Three Binary Responses
loglog Log-log Link Function
lognormal Lognormal Distribution
logoff Log link function with an offset
lomax Lomax Distribution Family Function
lqnorm Minimizing the L-q norm Family Function
lv Latent Variables
lvplot Latent Variable Plot
lvplot.qrrvglm Latent Variable Plot for QO models
lvplot.rrvglm Latent Variable Plot for RR-VGLMs
margeff Marginal effects for the multinomial logit and
cumulative models
maxwell Maxwell Distribution Family Function
mbinomial The Matched Binomial Distribution Family
Function
mccullagh89 McCullagh (1989) Distribution Family Function
meplot Mean Excess Plot
micmen Michaelis-Menten Model
mix2exp Mixture of Two Exponential Distributions
mix2normal1 Mixture of Two Univariate Normal Distributions
mix2poisson Mixture of Two Poisson Distributions
model.framevlm Construct the Model Frame of a VLM Object
model.matrixvlm Construct the Design Matrix of a VLM Object
moffset Matrix Offset
morgenstern Morgenstern's Bivariate Distribution Family
Function
multinomial Multinomial Logit Model
nakagami Nakagami Distribution Family Function
nbolf Negative Binomial-Ordinal Link Function
negbinomial Negative Binomial Distribution Family Function
normal1 Univariate Normal Distribution
nzc Chinese Population in New Zealand 1867-2001
Data
nzmarital New Zealand Marital Data.
olympic 2008 Summer Olympic Final Medal Count Data
ordpoisson Ordinal Poisson Family Function
oxtemp Oxford Temperature Data
paralogistic Paralogistic Distribution Family Function
pareto1 Pareto and Truncated Pareto Distribution Family
Functions
paretoIV Pareto(IV/III/II) Distribution Family Functions
perspqrrvglm Perspective plot for QRR-VGLMs
plackett Plackett's Bivariate Distribution Family
Function
plotdeplot.lmscreg Density Plot for LMS Quantile Regression
plotqrrvglm Model Diagnostic Plots for QRR-VGLMs
plotqtplot.lmscreg Quantile Plot for LMS Quantile Regression
plotrcam0 Main effects plot for a Row-Column Association
Model (RCAM)
plotvgam Default VGAM Plotting
plotvgam.control Control Function for plotvgam()
pneumo Pneumoconiosis in Coalminers Data
poissonff Poisson Family Function
poissonp Poisson-points-on-a-plane/volume Distances
Distribution
polf Poisson-Ordinal Link Function
posbinomial Positive Binomial Distribution Family Function
posnegbinomial Positive Negative Binomial Distribution Family
Function
posnormal1 Positive Normal Distribution Family Function
pospoisson Positive Poisson Distribution Family Function
powl Power Link Function
predictqrrvglm Predict Method for a CQO fit
predictvglm Predict Method for a VGLM fit
prentice74 Prentice (1974) Log-gamma Distribution
probit Probit Link Function
propodds Proportional Odds Model for Ordinal Regression
prplot Probability Plots for Categorical Data Analysis
put.smart Adds a List to the End of the List
".smart.prediction"
qrrvglm.control Control function for QRR-VGLMs (CQO)
qtplot.gumbel Quantile Plot for Gumbel Regression
qtplot.lmscreg Quantile Plot for LMS Quantile Regression
quasibinomialff Quasi-Binomial Family Function
quasipoissonff Quasi-Poisson Family Function
rayleigh Rayleigh Distribution Family Function
rcqo Constrained Quadratic Ordination
rdiric The Dirichlet distribution
recexp1 Upper Record Values from a 1-parameter
Exponential Distribution
reciprocal Reciprocal link function
recnormal1 Upper Record Values from a Univariate Normal
Distribution
rhobit Rhobit Link Function
riceff Rice Distribution Family Function
rig Reciprocal Inverse Gaussian distribution
rlplot.egev Return Level Plot for GEV Fits
rrar Nested reduced-rank autoregressive models for
multiple time series
rrvglm Fitting Reduced-Rank Vector Generalized Linear
Models (RR-VGLMs)
rrvglm-class Class "rrvglm"
rrvglm.control Control function for rrvglm
rrvglm.optim.control Control function for rrvglm() calling optim()
ruge Rutherford-Geiger Polonium Data
s Defining smooths in VGAM formulae
seq2binomial The Two-stage Sequential Binomial Distribution
Family Function
setup.smart Smart Prediction Setup
simplex Simplex Distribution Family Function
sinmad Singh-Maddala Distribution Family Function
skellam Skellam Distribution Family Function
skewnormal1 Univariate Skew-Normal Distribution Family
Function
slash Slash Distribution Family Function
smart.expression S Expression for Smart Functions
smart.mode.is Determine What Mode the Smart Prediction is In
smartpred Smart Prediction
snorm Skew-Normal Distribution
sratio Ordinal Regression with Stopping Ratios
studentt Student t Distribution
tikuv Short-tailed Symmetric Distribution Family
Function
tobit Tobit Model
toxop Toxoplasmosis Data
triangle Triangle Distribution Family Function
trplot Trajectory Plot
trplot.qrrvglm Trajectory plot for QRR-VGLMs
ugss Undergraduate Statistics Students Lifestyle
Questionnaire
uqo Fitting Unconstrained Quadratic Ordination
(UQO)
uqo.control Control Function for UQO models
uscrime Estimated Crime in 2009 in USA
usgrain Grain Prices Data in USA
venice Venice Maximum Sea Levels Data
vgam Fitting Vector Generalized Additive Models
vgam-class Class "vgam"
vgam.control Control function for vgam
vglm Fitting Vector Generalized Linear Models
vglm-class Class "vglm"
vglm.control Control function for vglm
vglmff-class Class "vglmff"
vonmises von Mises Distribution Family Function
vsmooth.spline Vector cubic smoothing spline
waitakere Waitakere Ranges Data
wald Wald Distribution Family Function
weibull Weibull Distribution Family Function
weightsvglm Prior and Working Weights of a VGLM fit
wffc 2008 World Fly Fishing Championships Data
wffc.P1 Point System for the 2008 World Fly Fishing
Championships
wffc.indiv 2008 World Fly Fishing Championships
(Individual results) Data
wffc.nc 2008 World Fly Fishing Championships (Number of
captures) Data
wffc.teams 2008 World Fly Fishing Championships (Team
results) Data
wrapup.smart Cleans Up After Smart Prediction
yeo.johnson Yeo-Johnson Transformation
yip88 Zero-Inflated Poisson Distribution (Yip (1988)
algorithm)
yulesimon Yule-Simon Family Function
zanegbinomial Zero-Altered Negative Binomial Distribution
zapoisson Zero-Altered Poisson Distribution
zero The zero Argument in VGAM Family Functions
zeta Riemann's Zeta Function
zetaff Zeta Distribution Family Function
zibinomial Zero-Inflated Binomial Distribution Family
Function
zigeometric Zero-Inflated Geometric Distribution Family
Function
zinegbinomial Zero-Inflated Negative Binomial Distribution
Family Function
zipebcom Exchangeable bivariate cloglog odds-ratio model
from a zero-inflated Poisson distribution
zipf Zipf Distribution Family Function
zipoisson Zero-Inflated Poisson Distribution Family
Function
|