/usr/lib/R/site-library/happy/INDEX is in r-other-mott-happy 2.1-7.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 | epistasis Analysis of Epistasis between Markers
gfit Fit a Gaussian Mixture Model to an object
returned by happy()
happy-internal Internal Happy Functions
happyplot Plotting functions for happy model fits
hdesign Extract design matrix or genotypes for a
specific marker interval from a happy object
hfit Fit a model to an object returned by happy()
introduction Quantitative Trait Locus analysis in
Heterogeneous Stocks
mergelist Create an object descrbing how to merge strains
together
mergematrices Construct matrices used to merge together
founder strains
mergeprepare Perform tests to determine whether individual
polymorphisms could have given rise to a QTL
save.genome Save HAPPY design matrices and genotypes to
disk for rapid reloading
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