/usr/lib/R/site-library/happy/help/AnIndex is in r-other-mott-happy 2.1-7.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 | comparelist happy-internal
condfit happy-internal
condmergefit mergeprepare
epistasis epistasis
epistasispair epistasis
fastmergefit mergeprepare
gaussian.fn gauss
gaussian.gr gauss
gaussian.init gauss
gaussian.iterate gauss
gaussian.loop gauss
gaussian.null gauss
gfit gauss
glmfit happy-internal
h.sum.prob2 happy-internal
happy AAA-happy
happy-internal happy-internal
happy.matrices AAA-happy
happy.save AAA-happy
happyplot happyplot
hdesign hdesign
hfit hfit
hfit.sequential hfit
hgenotype hdesign
hnonrecomb happy-internal
hprob hdesign
hprob2 happy-internal
introduction AAA-happy
load.genome hcache
load.markers hcache
matrixSquared happy-internal
mergedpositionmatrix mergematrices
mergefit mergeprepare
mergelist mergelist
mergematrices mergematrices
mergeplot happyplot
mergeprepare mergeprepare
mfit happy-internal
normalise hfit
pfit hfit
save.genome hcache
save.happy hcache
sdp happy-internal
strain.effects happy-internal
the.chromosomes hcache
twofit happy-internal
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