/etc/voxbo/defaults is in voxbo 1.8.5~svn1246-1ubuntu1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 | # If you're not running VoxBo in cluster mode, you can ignore this
# file. The defaults file sets variables and parameters that are used
# by the scheduler, by the servers, and by voxq.
# server -- nickname and fqdn for each server
server server1 server1.myinstitution.edu
# sendmail -- full path to sendmail or similar
sendmail /usr/sbin/sendmail
# email address of sysadmin, in case of serious problem
sysadmin nobody@nowhere.com
# login names of those who should have big privileges within voxbo
superusers root voxbo
# how long should the scheduler sleep, in seconds, between checking the queue
queuedelay 3
# the server port is the port your server listens to (defaults to
# 6004), as specified in your services file
# serverport 6004
# Each checkdir directive specifies a directory that *must* contain
# something on each server for the machine to receive jobs. This
# helps insulate the scheduler from NFS problems and things like that.
# checkdir /critical/dir1
# checkdir /critical/dir2
# Each jobtypes line specifies the name of a jobtype definition
# directory from VOXBODIR/etc. If you need machine-specific jobtypes
# files (e.g., some executables have different paths on different
# machines), you can do that here. Just make sure each machine
# handles all the jobtypes it might be sent.
jobtypes jobtypes
# username for the voxbo user, defaults to "voxbo"
#voxbouser voxbo
# benchmarks (undocumented, but pretty cool)
benchmark realign 3600 cp /jet/admin/run.tes /tmp;realign /tmp/run.tes
#benchmark lstmp 60 ls -lR /tmp
# environment variables under which all jobs run
setenv IDL_PATH=+/usr/local/rsi/idl/lib:/usr/local/VoxBo/pros:
setenv IDL_UTILS=/usr/local/rsi/idl_utils
#setenv LM_LICENSE_FILE=/usr/local/rsi/license/license.dat
setenv PATH=/usr/local/VoxBo/bin:/bin:/usr/bin:/usr/local/bin
setenv MATLABPATH=/usr/local/spm2
# SPM2
setenv SPM2_PATH=/usr/local/spm2
setenv SPM2_MATLAB_CMD=/usr/local/bin/matlab12 -nodisplay -nojvm -c 27000@aleida.uphs.upenn.edu
# SPM5
setenv SPM5_PATH=/usr/local/spm5
setenv SPM5_MATLAB_CMD=/usr/local/bin/matlab14sp3 -nodisplay -nojvm
# FSL-related
setenv FSLDIR=/usr/local/fsl
setenv FSLOUTPUTTYPE=NIFTI_GZ
setenv FSLMULTIFILEQUIT=TRUE
setenv FSLTCLSH=/usr/local/fsl/bin/tclsh
setenv FSLWISH=/usr/local/fsl/bin/wish
setenv FSLGNUPLOT=/usr/local/fsl/bin/gnuplot
setenv FSLDISPLAY=/usr/local/fsl/bin/display
setenv FSLCONVERT=/usr/local/fsl/bin/convert
setenv FSLBROWSER=$FSLDIR/tcl/fslwebbrowser
# ITK-related
setenv ITKBIN=/home/jasmuth/ITK/bin/
# PERL-related
setenv PERLLIB=/usr/local/lib/perl5/site_perl/5.8.8
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