/usr/share/app-install/desktop/gdpc:gdpc.desktop is in app-install-data 14.04.0.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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X-AppInstall-Package=gdpc
X-AppInstall-Popcon=8
X-AppInstall-Section=universe
Version=1.0
Name=GDPC Molecular Dynamic Simulator
GenericName=Molecular Dynamic Simulator
Comment=Visualize molecular dynamic simulations
Type=Application
Exec=gdpc
Categories=Science;Chemistry;Education;
X-Ubuntu-Gettext-Domain=app-install-data
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