/usr/share/biomaj/conf/process/dbigcg.sh is in biomaj 1.2.3-3.
This file is owned by root:root, with mode 0o755.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 | #!/bin/bash
# Args:
# idformat: embl
# subdirectory origin: fasta
# subdirectory destination: XXX -> emboss_XXX
mkdir $datadir/$dirversion/future_release/emboss_$3
curdate=$(date +"%d/%m/%y")
echo "dbigcg -dbname $dbname -idformat $1 -filenames '*.*' -release current -date $curdate -directory $datadir/$dirversion/future_release/$2 -indexoutdir $datadir/$dirversion/future_release/emboss_$3 -outfile outfile.dbigcg"
dbigcg -dbname $dbname -idformat $1 -filenames '*.*' -release current -date $curdate -directory $datadir/$dirversion/future_release/$2 -indexoutdir $datadir/$dirversion/future_release/emboss_$3 -outfile outfile.dbigcg
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