This file is indexed.

/usr/share/pyshared/asrun/common/utils.py is in code-aster-run 1.13.1-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
# -*- coding: utf-8 -*-
#pylint: disable-msg=E0611

# ==============================================================================
# COPYRIGHT (C) 1991 - 2003  EDF R&D                  WWW.CODE-ASTER.ORG
# THIS PROGRAM IS FREE SOFTWARE; YOU CAN REDISTRIBUTE IT AND/OR MODIFY
# IT UNDER THE TERMS OF THE GNU GENERAL PUBLIC LICENSE AS PUBLISHED BY
# THE FREE SOFTWARE FOUNDATION; EITHER VERSION 2 OF THE LICENSE, OR
# (AT YOUR OPTION) ANY LATER VERSION.
#
# THIS PROGRAM IS DISTRIBUTED IN THE HOPE THAT IT WILL BE USEFUL, BUT
# WITHOUT ANY WARRANTY; WITHOUT EVEN THE IMPLIED WARRANTY OF
# MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. SEE THE GNU
# GENERAL PUBLIC LICENSE FOR MORE DETAILS.
#
# YOU SHOULD HAVE RECEIVED A COPY OF THE GNU GENERAL PUBLIC LICENSE
# ALONG WITH THIS PROGRAM; IF NOT, WRITE TO EDF R&D CODE_ASTER,
#    1 AVENUE DU GENERAL DE GAULLE, 92141 CLAMART CEDEX, FRANCE.
# ==============================================================================

"""
Some utilities for asrun using only standard Python modules.
"""

import sys
import os
import os.path as osp
import re
import locale
import time


YES_VALUES = ['yes', 'oui', 'y', 'o']
YES_VALUES.extend([v.upper() for v in YES_VALUES])
NO_VALUES  = ['no', 'non', 'n']
NO_VALUES.extend([v.upper() for v in NO_VALUES])
YES = YES_VALUES[0]
NO  = NO_VALUES[0]


class Singleton(object):
    """Singleton implementation in python."""
    # add _singleton_id attribute to the class to be independant of import path used
    __inst = {}
    def __new__(cls, *args, **kargs):
        cls_id = getattr(cls, '_singleton_id', cls)
        if Singleton.__inst.get(cls_id) is None:
            Singleton.__inst[cls_id] = object.__new__(cls)
        return Singleton.__inst[cls_id]


class Enum(object):
    """
    This class emulates a C-like enum for python. It is initialized with a list
    of strings to be used as the enum symbolic keys. The enum values are automatically
    generated as sequencing integer starting at 0.
    """
    def __init__(self, *keys):
        """Constructor"""
        self._dict_keys = {}
        for inum, key in enumerate(keys):
            setattr(self, key, 2**inum)
            self._dict_keys[2**inum] = key

    def exists(self, value):
        """Tell if value is in the enumeration"""
        return self.get_id(value) is not None

    def get_id(self, value):
        """Return the key associated to the given value"""
        return self._dict_keys.get(value, None)


def _datefmt():
    """Localized date format"""
    if get_language() == "fr":
        return "%d/%m/%Y"
    else:
        return "%m/%d/%Y"

def _timefmt():
    """Localized time format"""
    if get_language() == "fr":
        return "%H:%M:%S"
    else:
        return "%I:%M:%S"

def now(datefmt=None, timefmt=None, sep=" "):
    if datefmt is None:
        datefmt = _datefmt()
    if timefmt is None:
        timefmt = _timefmt()
    fmt = ""
    if datefmt:
        fmt = datefmt
    if timefmt:
        if datefmt:
            fmt += sep
        fmt += timefmt
    return time.strftime(fmt)

def hms2s(vtime):
    """Convert a time given in the format 'H:M:S' in seconds.
    Raise ValueError if fails."""
    secs = 0
    stps = vtime.split(':')
    m = 1
    while len(stps) > 0:
        secs += int(stps.pop()) * m
        m = m * 60
    if len(stps) > 3:
        raise ValueError(u"invalid time value : '%s'" % vtime)
    return secs

def dhms2s(vtime, sep='-'):
    """Convert a time given in the format 'D-H:M:S' in seconds."""
    if type(vtime) in (list, tuple):
        return sum([dhms2s(vt) for vt in vtime])
    secs = 0
    stps = vtime.split(sep)
    secs = hms2s(stps.pop())
    if len(stps) > 0:
        secs += int(stps[0]) * 86400
    return secs

_encoding = None
def get_encoding():
    """Return local encoding
    """
    global _encoding
    if _encoding is None:
        try:
            _encoding = locale.getpreferredencoding() or 'ascii'
        except locale.Error:
            _encoding = 'ascii'
    return _encoding


def get_language():
    """Return default language (2 letters)"""
    lang = locale.getdefaultlocale()[0]
    if type(lang) is str:
        lang = lang.split('_')[0]
    else:
        lang = "en"
    return lang


_val_pid = 0
def get_unique_id(jobid, num=None):
    """Return an identifier (as a pid) based on `jobid`.
    Counter is incremented at each call.
    """
    global _val_pid
    if num is None:
        _val_pid += 1
        num = _val_pid
    assert type(num) in (int, long), u'get_unique_pid: integer argument required!'
    return '%04d-%s' % (num, jobid)


def _listsurcharge_u2mess(fsurch, lf):
    """Write the fortran subroutine "surchg.f".
        fsurch : subroutine filename
        lf     : list of modified files
    """
    header = """
      SUBROUTINE SURCHG(IFM)
      INTEGER IFM
      CHARACTER*80  VALK(%(nbfile)s)
      IFM = 1"""
    fmt_line = "      VALK(%(indice)d) = '%(subroutine)s%(separ)s'"
    fmt_call = "      CALL U2MESK('A','SUPERVIS_40',%(nbfile)s,VALK)"
    footer = "      END"
    cont = []
    l_file = [os.path.basename(f) for f in lf]
    l_file.sort()
    nbfile = len(l_file)
    cont.append(header % { 'nbfile' : max(1, nbfile) })
    npl = 6
    for i, filename in enumerate(l_file):
        sep = ', '
        if i + 1 == len(l_file):
            sep = ''
        cont.append(fmt_line % { 'indice' : i + 1, 'subroutine' : filename, 'separ' : sep })

    cont.append(fmt_call % { 'nbfile' : nbfile })
    cont.append(footer)

    open(fsurch, 'w').write(os.linesep.join(cont))
    #print os.linesep.join(cont)


def _listsurcharge_utmess(fsurch, lf):
    """Write the fortran subroutine "surchg.f".
        fsurch : subroutine filename
        lf     : list of modified files
    """
    cont = ["""      SUBROUTINE SURCHG(IFM)
      INTEGER IFM
      CALL UTMESS('A', 'SURCHG', 'VERSION SURCHARGEE PAR :')"""]
    templ = "      WRITE(IFM,'(3X,A)') '"
    sep = ', '
    lmax = 72
    len0 = len(templ)
    files = [os.path.basename(f) for f in lf]
    files.sort()
    while len(files)>0:
        lig = []
        clen = len0-len(sep)
        while len(files)>0 and clen+len(files[0])+len(sep) <= lmax-1:
            clen = clen+len(files[0])+len(sep)
            lig.append("%s" % files.pop(0))
        cont.append(templ + sep.join(lig) + "'")
        # si on n'a rien pu ajouter, il faut tronquer
        if clen == len0-len(sep):
            files[0] = files[0][:lmax-1-clen-len(sep)]
    cont.extend(['      END', ''])
    f = open(fsurch, 'w')
    f.write(os.linesep.join(cont))
    f.close()


def listsurcharge(version, fsurch, lf):
    """Aiguillage pour les versions avant U2MESS ( < 8.3.14)
    Exemple : listsurcharge((9,0,5), '/tmp/surchg.f', ['rout01.f', 'rout02.f'])
    """
    version = version2tuple(version)
    if version < (8, 3, 14):
        func = _listsurcharge_utmess
    else:
        func = _listsurcharge_u2mess
    func(fsurch, lf)


def less_than_version(vers1, vers2):
    return version2tuple(vers1) < version2tuple(vers2)


def version2tuple(vers_string, beta=True):
    """1.7.9alpha --> (1, 7, 9, 'alpha')
    'beta' should be set to True, if beta versions exist.
    If beta is True, 1.8 --> (1, 8, 0, 'final'),
    and (1, 8, 0) if beta is False.
    """
    tupl0 = vers_string.split('.')
    val = []
    for v in tupl0:
        m = re.search('(^[ 0-9]+)(.*)', v)
        if m:
            val.append(int(m.group(1)))
            if m.group(2):
                val.append(m.group(2).replace('-', '').replace('_', '').strip())
        else:
            val.append(v)
    val.extend([0]*(3-len(val)))
    if beta and type(val[-1]) in (int, long):
        val.append('final')
    return tuple(val)


def tuple2version(tup):
    """(1, 8, 0, 'final') => '1.8.0.final'
    """
    return '.'.join([str(i) for i in tup])


def get_list(ftest, unique=True):
    """Build list of the tests, ignore all after # or %  (characters comment).
    """
    iret = 0
    ltest = []
    try:
        line = open(ftest, 'r').read().splitlines()
    except (OSError, IOError):
        iret = 4
        return iret, ltest

    lfich = [t for t in [re.sub(' *[#%]+.*', '', l).strip() for l in line] if t != '']
    if unique:
        # delete twins (by keeping ordering)
        ltest = []
        for t in lfich:
            if not t in ltest:
                ltest.append(t)
    else:
        ltest = lfich

    return iret, ltest


list_para_test = ['mem_job', 'tps_job', 'mem_aster', 'memjeveux', 'memjeveux_stat',
                  'ncpus', 'mpi_nbnoeud', 'mpi_nbcpu', 'liste_test', 'testlist',
                  'memory_limit', 'time_limit']

def getpara(fpara, platform=None, others=[]):
    """Return a dict object by parsing the file 'fpara' written as :
    param_name1 value1 param_name2 value2...
    (parameters name should be in list_param).
    Be careful : tps_job is in seconds in fpara and in minutes in .export (LSF) !
    memjeveux in Mw, memjeveux_stat in MB...
    """
    from asrun.common.i18n import _
    list_param = list_para_test + others
    dtrans = {
        'nnoeud_mpi' : 'mpi_nbnoeud',
        'nproc_mpi' : 'mpi_nbcpu',
    }
    supported_param = list_param + dtrans.keys()
    iret, err = 0, ''
    dico = {}
    for k in list_param:
        dico[k] = '0'

    # ----- check that file exists
    if not os.path.exists(fpara):
        iret = 1
        err = _(u'file not found : %s') % fpara
        return iret, {}, err

    # ----- parsing
    f = open(fpara, 'r')
    for str0 in f:
        line = str0.split()
        while len(line) > 0:
            w = line.pop(0)
            if w in supported_param:
                dico[dtrans.get(w, w)] = line.pop(0)
    f.close()

    # ----- ncpus keep as string...
    # ----- convert time to int
    try:
        dico['tps_job'] = int(float(dico['tps_job']))
    except ValueError:
        iret = 1
        err = _(u'incorrect value for tps_job (%s) in %s') % (dico['tps_job'], fpara)
        return iret, {}, err

    # ----- delete 'Mo' in mem_job value
    try:
        dico['mem_job'] = int(float(dico['mem_job'].replace('Mo', '').replace('MB', '')))
    except ValueError:
        iret = 1
        err = _(u'incorrect value for mem_job (%s) in %s') % (dico['mem_job'], fpara)
        return iret, {}, err

    # ----- delete 'Mo' in mem_job value
    try:
        dico['memjeveux_stat'] = int(float(dico['memjeveux_stat']))
    except ValueError:
        iret = 1
        err = _(u'incorrect value for memjeveux_stat (%s) in %s') % (dico['memjeveux_stat'], fpara)
        return iret, {}, err

    # ----- convert mem_aster to int
    try:
        dico['mem_aster'] = int(float(dico['mem_aster']))
    except ValueError:
        iret = 1
        err = _(u'incorrect value for mem_aster (%s) in %s') % (dico['mem_aster'], fpara)
        return iret, {}, err
    if dico['mem_aster'] == 0:
        dico['mem_aster'] = 100

    if platform is not None:
        if re.search('64$', platform):
            facW = 8
        else:
            facW = 4
        dico['memjeveux'] = dico['mem_job'] / facW * dico['mem_aster'] / 100.

    # number of cpus, nodes must be >= 1
    for key in ('ncpus', 'mpi_nbnoeud', 'mpi_nbcpu'):
        val = dico[key]
        if val.isdigit() and int(val) > 1:
            pass
        else:
            dico[key] = '1'
    return iret, dico, err


def get_absolute_path(path):
    """Retourne le chemin absolu en suivant les liens éventuels.
    """
    if os.path.islink(path):
        path = os.path.realpath(path)
    res = os.path.normpath(os.path.abspath(path))
    return res


def get_absolute_dirname(path):
    """Retourne le chemin absolu en suivant les liens éventuels.
    """
    res = os.path.normpath(os.path.join(get_absolute_path(path), os.pardir))
    return res


def get_subdirs(list_in):
    """Retourne les éléments de `list_in` qui ne sont pas des sous-répertoires
    des autres.
    Exemple : ['/a', '/b/c/d', '/a/b/c', '/b/c'] ==> ['/a', '/b/c']
    """
    l_out = []
    l_in = list_in[:]
    l_in.sort()
    for din in l_in:
        keep = True
        for dou in l_out:
            if din.startswith(os.path.normpath(dou) + os.sep):
                keep = False
                break
        if keep:
            l_out.append(din)
    return l_out


def remove_empty_dirs(fromdir):
    """Removes all empty dirs.
    """
    for base, dirs, files in os.walk(fromdir, topdown=False):
        try:
            os.rmdir(base)
        except:
            pass

def renametree(src, dst):
    """Rename a entire tree 'src' to or into 'dst'."""
    if not osp.exists(dst):
        os.rename(src, dst)
    elif osp.isfile(dst) != osp.isfile(src):
        raise OSError("source and destination must be both files or directories")
    elif osp.isfile(src):
        # both are files
        os.rename(src, dst)
    else:
        # src and dst are directories
        names = os.listdir(src)
        for name in names:
            srcname = osp.join(src, name)
            dstname = osp.join(dst, name)
            renametree(srcname, dstname)
        os.rmdir(src)

def get_tmpname_base(dirname=None, basename=None, user=None, node=None, pid=None):
    """Return a name for a temporary directory (*not created*)
    of the form : 'dirname'/user@machine-'basename'.'pid'
    *Only* basename is not compulsory in this variant.
    """
    basename = basename or 'tmpname-%.6f' % time.time()
    if pid == "auto":
        pid = "pid-%.6f" % time.time()
    root, ext = osp.splitext(basename)
    name = '%s-%s-' % (user, node) + root + '.' + str(pid) + ext
    return osp.join(dirname, name)


def check_joker(filename, joker):
    """Returns if 'filename' verifies 'joker' : ("toto.comm", "com?") returns True
    """
    reg = re.compile(joker.replace(".", "\.").replace("?", ".").replace("*", ".*"))
    res = reg.search(osp.basename(filename)) is not None
    return res


def default_install_value(expression, default):
    """Evaluate 'expression' (similar to "value = xxxxx")
    and return 'value' or 'default'
    """
    value = default
    try:
        d = {}
        exec expression in d
        if type(d['value']) in (str, unicode) and \
           re.search('\?{1}([^\'\"|]+?)\?{1}', d['value']) is None:
            value = d['value']
    except:
        pass
    return value


# hashlib only exists in python>=2.5
_sha1 = None
def sha1(s):
    global _sha1
    if _sha1 is None:
        try:
            import hashlib
            _sha1 = hashlib.sha1
        except ImportError:
            import sha
            _sha1 = sha.sha
    return _sha1(s)


# MIMEText has been moved after python2.4
# this raises pylint E0611 error
try:
    if sys.hexversion < 0x020500F0:
        from email.MIMEText import MIMEText
    else:
        from email.mime.text import MIMEText
except ImportError:
    MIMEText = None

MIMETextClass = MIMEText

def find_command(content, command):
    """Return the lowest index in content where command is found and
    the index of the end of the command.
    """
    pos, endpos = -1, -1
    re_start = re.compile('^ *%s *\(' % re.escape(command), re.M)
    mat_start = re_start.search(content)
    if mat_start is not None:
        pos = mat_start.start()
        endpos = search_enclosed(content, pos)
    return pos, endpos


def search_enclosed(string, start=0):
    """Search the closing parenthesis of the first opening one in string.
    """
    endpos = -1
    first_found = False
    closed = False
    count = 0
    for index, char in enumerate(string[start:]):
        if char == '(':
            count += 1
        if not first_found and count > 0:
            first_found = True
        if char == ')':
            count -= 1
        if first_found and count == 0:
            closed = True
            break
    if closed:
        endpos = start + index
    return endpos


def re_search(content, **kargs):
    """Search the regular expression `pattern` in content.
    If `string` is provided, it is escaped and `pattern` must contain "%s".
    """
    flag = re.MULTILINE | kargs.get('flag', re.MULTILINE)
    what = kargs.get('result', 'bool')
    pattern = kargs.get('pattern', '%s')

    if kargs.get('string'):
        pattern = pattern % re.escape(kargs['string'])

    expr = re.compile(pattern, flag)

    if what == 'bool':
        res = expr.search(content) != None
    elif what == 'number':
        res = len(expr.findall(content))
    elif what == 'value':
        res = expr.findall(content)
    else:
        res = None
    return res


def get_plugin(uri):
    """Load and return a python object (class, function...).
    Its `uri` looks like "mainpkg.subpkg.module.object", this means
    that "mainpkg.subpkg.module" is imported and "object" is
    the plugin object to return.
    """
    path = uri.split('.')
    modname = '.'.join(path[:-1])
    if len(modname) == 0:
        raise ImportError(u"invalid plugin name: %s" % uri)
    try:
        __import__(modname)
        mod = sys.modules[modname]
        plugin_object = getattr(mod, path[-1])
    except (ImportError, AttributeError), err:
        raise ImportError(u"plugin not found: %s\n"
            "Check the plugin name in 'etc/codeaster/asrun' configuration file\n"
            "and it would be search in PYTHONPATH : %s" % (uri, sys.path))
    return plugin_object


def unique_basename(pathname):
    """Return a basename which takes all the pathname in account
    (so it should be unique)."""
    bname = sha1(pathname).hexdigest() + '.' + osp.basename(pathname)
    return bname

__reg_prefix__ = re.compile('^[a-f0-9]{%d}\.' % (sha1('a').digest_size * 2), re.I)

def unique_basename_remove(bname):
    """Remove the prefix added by unique_basename."""
    return __reg_prefix__.sub('', bname)

def force_list(obj):
    """Return 'obj' as a list object."""
    if type(obj) not in (list, tuple):     # pas une liste
        obj = [obj,]
    return obj

def force_couple(obj):
    """Return 'obj' as a list of couples."""
    if type(obj) not in (list, tuple):     # pas une liste
        obj = [[obj, None],]
    elif type(obj[0]) in (list, tuple):    # liste de listes
        pass
    else:
        assert len(obj) == 2, 'not a couple : %s' % obj
        obj = [obj,]
    # verif
    for i, val in enumerate(obj):
        assert len(val) == 2, 'item %d is not a couple : %s' % (i, val)
    return obj