/usr/share/pyshared/asrun/execute.py is in code-aster-run 1.13.1-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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# ==============================================================================
# COPYRIGHT (C) 1991 - 2003 EDF R&D WWW.CODE-ASTER.ORG
# THIS PROGRAM IS FREE SOFTWARE; YOU CAN REDISTRIBUTE IT AND/OR MODIFY
# IT UNDER THE TERMS OF THE GNU GENERAL PUBLIC LICENSE AS PUBLISHED BY
# THE FREE SOFTWARE FOUNDATION; EITHER VERSION 2 OF THE LICENSE, OR
# (AT YOUR OPTION) ANY LATER VERSION.
#
# THIS PROGRAM IS DISTRIBUTED IN THE HOPE THAT IT WILL BE USEFUL, BUT
# WITHOUT ANY WARRANTY; WITHOUT EVEN THE IMPLIED WARRANTY OF
# MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. SEE THE GNU
# GENERAL PUBLIC LICENSE FOR MORE DETAILS.
#
# YOU SHOULD HAVE RECEIVED A COPY OF THE GNU GENERAL PUBLIC LICENSE
# ALONG WITH THIS PROGRAM; IF NOT, WRITE TO EDF R&D CODE_ASTER,
# 1 AVENUE DU GENERAL DE GAULLE, 92141 CLAMART CEDEX, FRANCE.
# ==============================================================================
"""
Give functions :
- to compile code source, to create catalogue and to build
an executable file,
- to execute Code_Aster...
Functions are called by an AsterRun object.
"""
import os
import os.path as osp
from glob import glob
from asrun.core import magic
from asrun.common.i18n import _
from asrun.mystring import print3, ufmt
from asrun.profil import AsterProfil
from asrun.build import AsterBuild
from asrun.config import build_config_from_export
from asrun.maintenance import get_aster_version, get_export
from asrun.execution import execute, copyfiles, build_export_from_files, add_all_results
from asrun.mpi import MPI_INFO
from asrun.astout import RunAstout
from asrun.parametric import Parametric
from asrun.multiple import Multiple
from asrun.common_func import get_tmpname
from asrun.common.utils import get_absolute_path, listsurcharge, get_plugin, \
NO_VALUES
from asrun.toolbox import MakeShared
def SetParser(run):
"""Configure the command-line parser, add options name to store to the list,
set actions informations.
run : AsterRun object which manages the execution
"""
acts_descr = {
'run' : {
'method' : RunAster,
'syntax' : '[options] profile',
'help' : _(u'Execute the execution described by the profile (default action)')
},
'quick' : {
'method' : StartNow,
'syntax' : '[options] file1 [file2 [...]] [--surch_pyt=...] [--surch_fort=...]',
'help' : _(u'Start quickly an interactive execution using the files given in arguments')
},
'test' : {
'method' : StartTestNow,
'syntax' : '[options] testcase',
'help' : _(u'Start an interactive execution of a testcase')
},
'make_shared' : {
'method' : MakeShared,
'syntax' : '--output=FILE [src1 [...]] srcN',
'help' : _(u'Produce a shared library named FILE by compiling the '
'source files src1... srcN. Typically used to build a UMAT library.'),
},
}
opts_descr = {
'copy_all_results' : {
'args' : ('--copy_all_results', ),
'kwargs' : {
'action' : 'store_true',
'default' : False,
'dest' : 'copy_all_results',
'help' : _(u'copy all results in the current directory (for --quick action)')
}
},
}
run.SetActions(
actions_descr = acts_descr,
actions_order = ['run', 'quick', 'test', 'make_shared'],
group_options = False,
options_descr=opts_descr
)
def RunAster(run, *args):
"""Allow to run Code_Aster with or without compiling additional source files,
check a development, run a list of test cases...
"""
run.print_timer = True
prev = os.getcwdu()
# ----- check argument
if len(args) != 1:
run.parser.error(_(u"'--%s' requires one argument") % run.current_action)
# 1. ----- initializations
jn = run['num_job']
fprof = get_tmpname(run, run['tmp_user'], basename='profil_astk')
run.ToDelete(fprof)
# 1.1. ----- check argument type
# 1.1.1. ----- use profile from args
if isinstance(args[0], AsterProfil):
prof = args[0].copy()
prof.WriteExportTo(fprof)
forig = fprof
else:
# 1.1.2. ----- read profile from args
forig = args[0]
kret = run.Copy(fprof, forig, niverr='<F>_PROFILE_COPY')
prof = AsterProfil(fprof, run)
if not run.IsRemote(forig):
export_fname = run.PathOnly(get_absolute_path(forig))
prof.absolutize_filename(export_fname)
if not prof['mode'][0] in ('batch', 'interactif'):
run.Mess(_(u"Unknown mode (%s), use 'interactif' instead") % \
repr(prof['mode'][0]), 'UNEXPECTED_VALUE')
prof['mode'] = ['interactif']
run.DBG("Input export : %s" % fprof, prof)
# 1.2. get AsterConfig and AsterBuild objects
REPREF = prof.get_version_path()
conf = build_config_from_export(run, prof)
build = AsterBuild(run, conf)
DbgPara = {
'debug' : { 'exe' : conf['BIN_DBG'][0],
'suff' : conf['BINOBJ_DBG'][0],
'libast' : conf['BINLIB_DBG'][0],
'libfer' : conf['BINLIBF_DBG'][0]},
'nodebug' : { 'exe' : conf['BIN_NODBG'][0],
'suff' : conf['BINOBJ_NODBG'][0],
'libast' : conf['BINLIB_NODBG'][0],
'libfer' : conf['BINLIBF_NODBG'][0]},
}
# 1.3. set environment depending on version
for f in conf.get_with_absolute_path('ENV_SH'):
run.AddToEnv(f)
# 1.4. set mpi parameters
klass = MPI_INFO
# allow to customize of the execution objects
if run.get('schema_execute'):
schem = get_plugin(run['schema_execute'])
run.DBG("calling plugin : %s" % run['schema_execute'])
klass = schem(prof)
mpi = klass(conf.get_defines())
iret = mpi.set_cpuinfo(prof['mpi_nbnoeud'][0], prof['mpi_nbcpu'][0])
if iret == 1:
run.Mess(ufmt(_(u"%s is not a MPI version of Code_Aster. "
"The number of nodes/processors must be equal to 1."), REPREF),
"<F>_INVALID_PARAMETER")
elif iret != 0:
run.Mess(_(u"incorrect value for mpi_nbnoeud (%s) or mpi_nbcpu (%s)") \
% (prof['mpi_nbnoeud'][0], prof['mpi_nbcpu'][0]), '<F>_INVALID_PARAMETER')
# 1.5. rep_trav from profile or from run[...]
reptrav = mpi.set_rep_trav(prof['rep_trav'][0], prof['mode'][0])
# write reptrav in the export
prof['rep_trav'] = reptrav
prof.WriteExportTo(prof.get_filename())
#XXX overrides the original export
if forig != prof.get_filename():
run.Copy(forig, prof.get_filename(), niverr='<A>_ALARM')
# add reptrav to LD_LIBRARY_PATH (to find dynamic libs provided by user)
old = os.environ.get("LD_LIBRARY_PATH", "")
os.environ["LD_LIBRARY_PATH"] = (reptrav + os.pathsep + old).strip(os.pathsep)
# do not reinitialize rep_trav if
if prof['prep_env'][0] not in NO_VALUES:
run.MkDir(reptrav, chmod=0700)
if prof['detr_rep_trav'][0] not in NO_VALUES:
run.ToDelete(reptrav)
# 1.6. copy profile in rep_trav
kret = run.Copy(osp.join(reptrav, jn+'.export'), fprof)
# ... and config file as ./config.txt
conf.WriteConfigTo(osp.join(reptrav, 'config.txt'))
# 1.7. debug/nodebug
dbg = prof['debug'][0]
if dbg == '':
dbg = 'nodebug'
# 1.8. default values
exetmp = osp.join(REPREF, DbgPara[dbg]['exe'])
cmdetmp = osp.join(REPREF, conf['BINCMDE'][0])
eletmp = osp.join(REPREF, conf['BINELE'][0])
# 2. ----- read profile values
# it's valid because exec, cmde and ele must appear only once
# these values will be overidden if they are available in reptrav
# after an occurence of 'make_...'
if prof.Get('DR', 'exec'):
exetmp = prof.Get('DR', 'exec')[0]['path']
if prof.Get('DR', 'cmde'):
cmdetmp = prof.Get('DR', 'cmde')[0]['path']
if prof.Get('DR', 'ele'):
eletmp = prof.Get('DR', 'ele')[0]['path']
# order of actions :
list_actions = ['make_exec', 'make_cmde', 'make_ele',
'make_etude', 'make_dbg', 'make_env', 'astout',
'distribution', 'multiple',
'exec_crs', 'exec_crp']
# 3. ==> Let's go !
# 3.0. check if we know what to do
for act in prof['actions']:
if act == '':
run.Mess(_(u'nothing to do'), 'OK')
elif not act in list_actions:
run.Mess(_(u'unknown action : %s') % act, '<A>_ALARM')
# add arguments to find the process (for as_actu/as_del)
if prof.args.get('args') is None:
prof.args['args'] = ''
if not 'astout' in prof['actions'] and not 'distribution' in prof['actions']:
args_supp = ' -num_job '+jn+' -mode '+prof['mode'][0]
prof.args['args'] += args_supp
# check if the version allows developments
if conf['DEVEL'][0] in NO_VALUES and \
( 'make_exec' in prof['actions'] or \
'make_cmde' in prof['actions'] or \
'make_ele' in prof['actions'] ):
run.Mess(_(u'The configuration of this version does not allow '
'user developments.'), '<F>_ERROR')
#
# 3.1. ----- make_exec
#
iret = 0
if 'make_exec' in prof['actions']:
run.DBG(u'Start make_exec action')
exetmp = osp.join(reptrav, 'aster.exe')
tit = _(u'Compilation of source files')
run.Mess(tit, 'TITLE')
run.timer.Start(tit)
repact = osp.join(reptrav, 'make_exec')
repobj = osp.join(repact, 'repobj')
run.MkDir(repact)
lf = []
for typ in ('c', 'f', 'f90'):
for rep in [l['path'] for l in prof.Get('D', typ=typ)]:
jret, lbi = build.Compil(typ.upper(), rep, repobj, dbg,
rep_trav=repact, error_if_empty=True,
numthread='auto')
iret = max(iret, jret)
lf.extend(lbi)
# liste des fichiers surchargés
vers = get_aster_version(REPREF)
vers = '.'.join(vers[:3])
fsurch = osp.join(repact, 'surchg.f')
listsurcharge(vers, fsurch, lf)
jret, lbi = build.Compil('F', fsurch, repobj, dbg, repact)
run.timer.Stop(tit)
run.CheckOK()
tit = _(u'Build executable')
run.Mess(tit, 'TITLE')
run.timer.Start(tit)
libaster = osp.join(REPREF, DbgPara[dbg]['libast'])
libferm = osp.join(REPREF, DbgPara[dbg]['libfer'])
# for backward compatibility
if run.IsDir(libaster):
libaster = osp.join(libaster, 'lib_aster.lib')
if run.IsDir(libferm):
libferm = osp.join(libferm, 'ferm.lib')
lobj = glob(osp.join(repobj, '*.o'))
# build an archive if there are more than NNN object files
if len(lobj) > 500:
run.timer.Stop(tit)
tit2 = _(u'Add object files to library')
run.timer.Start(tit2)
libtmp = osp.join(repobj, 'libsurch.a')
run.Copy(libtmp, libaster)
kret = build.Archive(repobj, libtmp, force=True)
lobj = []
libaster = libtmp
run.timer.Stop(tit2)
run.timer.Start(tit)
kret = build.Link(exetmp, lobj, libaster, libferm, repact)
run.timer.Stop(tit)
run.CheckOK()
tit = _(u'Copying results')
run.timer.Start(tit, num=999)
if prof.Get('R', typ='exec'):
exe = prof.Get('R', typ='exec')[0]
run.Delete(exe['path'], remove_dirs=False)
iret = run.MkDir(osp.dirname(exe['path']))
iret = run.Copy(exe['path'], exetmp)
exedata = prof.Get('D', typ='exec')
if exedata and exedata[0]['path'] != exe['path']:
exetmp = exedata[0]['path']
run.timer.Stop(tit)
run.Mess(_(u'Code_Aster executable successfully created'), 'OK')
#
# 3.2. ----- make_cmde
#
if 'make_cmde' in prof['actions']:
run.DBG(u'Start make_cmde action')
tit = _(u"Compilation of commands catalogue")
cmdetmp = osp.join(reptrav, 'cata_commande')
run.timer.Start(tit)
repact = osp.join(reptrav, 'make_cmde')
run.MkDir(repact)
kargs = { 'exe' : exetmp, 'cmde' : cmdetmp, }
kargs['capy'] = [l['path'] for l in prof.Get('D', typ='capy')]
lfun = prof.Get('D', typ='unig')
if lfun:
kargs['unigest'] = build.GetUnigest(lfun[0]['path'])
if prof.Get('D', typ='py'):
kargs['py'] = [l['path'] for l in prof.Get('D', typ='py')]
jret = build.CompilCapy(REPREF, repact, **kargs) #i18n=True,
run.timer.Stop(tit)
run.CheckOK()
tit = _(u'Copying results')
run.timer.Start(tit)
if prof.Get('R', typ='cmde'):
cmde = prof.Get('R', typ='cmde')[0]
iret = run.MkDir(cmde['path'])
iret = run.Copy(cmde['path'], osp.join(cmdetmp, 'cata*.py*'))
run.timer.Stop(tit)
#
# 3.3. ----- make_ele
#
if 'make_ele' in prof['actions']:
run.DBG(u'Start make_ele action')
tit = _(u"Compilation of elements")
eletmp = osp.join(reptrav, 'elem.1')
run.timer.Start(tit)
repact = osp.join(reptrav, 'make_ele')
run.MkDir(repact)
kargs = { 'exe' : exetmp, 'cmde' : cmdetmp, 'ele' : eletmp, }
kargs['cata'] = [l['path'] for l in prof.Get('D', typ='cata')]
lfun = prof.Get('D', typ='unig')
if lfun:
kargs['unigest'] = build.GetUnigest(lfun[0]['path'])
if prof.Get('D', typ='py'):
kargs['py'] = [l['path'] for l in prof.Get('D', typ='py')]
jret = build.CompilEle(REPREF, repact, **kargs)
run.timer.Stop(tit)
run.CheckOK()
tit = _(u'Copying results')
run.timer.Start(tit)
if prof.Get('R', typ='ele'):
ele = prof.Get('R', typ='ele')[0]
iret = run.MkDir(osp.dirname(ele['path']))
iret = run.Copy(ele['path'], eletmp)
run.timer.Stop(tit)
#
# 3.4. ----- make_env / make_etude / make_dbg
#
if 'make_env' in prof['actions'] or 'make_etude' in prof['actions'] or \
'make_dbg' in prof['actions']:
run.DBG(u'Start make_etude/make_env/make_dbg action')
os.chdir(reptrav)
run.Mess(_(u'Code_Aster execution'), 'TITLE')
# 3.4.1. prepare reptrav to run Code_Aster (proc# = 0)
only_env = 'make_env' in prof['actions']
kargs = {
'exe' : exetmp,
'cmde' : cmdetmp,
'ele' : eletmp,
'lang' : prof['lang'][0],
'only_env' : only_env,
}
lfun = prof.Get('D', typ='unig')
if lfun:
kargs['unigest'] = build.GetUnigest(lfun[0]['path'])
if prof.Get('D', typ='py'):
kargs['py'] = [l['path'] for l in prof.Get('D', typ='py')]
tit = _(u'Preparation of environment')
run.timer.Start(tit)
run.Mess(ufmt(_(u'prepare environment in %s'), reptrav))
if prof['prep_env'][0] != 'no':
build.PrepEnv(REPREF, reptrav, dbg=dbg, **kargs)
else:
run.Mess(_(u'... skipped (%s = no) !') % 'prep_env', 'SILENT')
run.timer.Stop(tit)
# 3.4.2. copy datas (raise <E> errors if failed)
tit = _(u'Copying datas')
run.Mess(tit, 'TITLE')
run.timer.Start(tit)
if prof['copy_data'][0] not in NO_VALUES:
copyfiles(run, 'DATA', prof)
else:
run.Mess(_(u'... skipped (%s = no) !') % 'copy_data', 'SILENT')
print3(os.getcwdu())
run.timer.Stop(tit)
# 3.4.3. execution
diag, tcpu, tsys, ttot, copybase = execute(
reptrav,
multiple = False,
with_dbg = 'make_dbg' in prof['actions'],
only_env = only_env,
mpi_info = mpi,
run=run, conf=conf, prof=prof, build=build, exe=exetmp)
if not 'make_env' in prof['actions']:
# 3.4.4. copy results
tit = _(u'Copying results')
run.Mess(tit, 'TITLE')
run.timer.Start(tit)
if prof['copy_result'][0] not in NO_VALUES:
emit_alarm = prof['copy_result_alarm'][0] not in NO_VALUES
copyfiles(run, 'RESU', prof, copybase, emit_alarm)
else:
run.Mess(_(u'... skipped (%s = no) !') % 'copy_result', 'SILENT')
run.timer.Stop(tit)
run.Mess(_(u'Code_Aster run ended'), diag)
# 3.4.5. add .resu/.erre to output for testcases
if osp.exists('fort.15') and os.stat('fort.15').st_size > 0:
run.Mess(_(u'Content of RESU file'), 'TITLE')
run.FileCat('fort.8', magic.get_stdout())
run.Mess(_(u'Content of ERROR file'), 'TITLE')
run.FileCat('fort.9', magic.get_stdout())
run.CheckOK()
os.chdir(prev)
#
# 3.5. ----- astout
#
if 'astout' in prof['actions']:
run.DBG(u'Start astout action')
kargs = { 'exe' : exetmp,
'cmde' : cmdetmp,
'ele' : eletmp,
'numthread' : prof['numthread'][0],
}
os.chdir(reptrav)
RunAstout(run, conf, prof, mpi_info=mpi, **kargs)
os.chdir(prev)
#
# 3.6. ----- distribution
#
if 'distribution' in prof['actions']:
run.DBG(u'Start distribution action')
kargs = { 'exe' : exetmp,
'cmde' : cmdetmp,
'ele' : eletmp,
'numthread' : prof['numthread'][0],
}
Parametric(run, prof, mpi_info=mpi, **kargs)
#
# 3.7. ----- multiple
#
if 'multiple' in prof['actions']:
run.DBG(u'Start multiple action')
Multiple(run, prof, mpi_info=mpi, numthread=prof['numthread'][0])
#
# 3.8. ----- exec_crs
#
if 'exec_crs' in prof['actions']:
run.DBG(u'Start exec_crs action')
repsrc = osp.join(reptrav, 'sources')
reptmp = osp.join(reptrav, 'tmp')
fmsg = osp.join(reptrav, 'messages')
run.MkDir(repsrc)
tit = _(u'Copy of source files')
run.Mess(tit, 'TITLE')
run.timer.Start(tit)
lf = prof.Get('D', typ='f')
for rep in [l['path'] for l in lf]:
if run.IsDir(rep):
src = osp.join(rep, '*.f')
else:
src = rep
iret = run.Copy(repsrc, src)
run.timer.Stop(tit)
# command line
tit = _(u'Execution of CRS')
run.Mess(tit+_(u' (Syntax Rules Control)'), 'TITLE')
cmd = []
cmd.extend(conf['CRS'])
cmd.append(repsrc)
cmd.append(fmsg)
cmd.append(reptmp)
run.timer.Start(tit)
iret, output = run.Shell(' '.join(cmd), follow_output=True)
if osp.exists(fmsg):
run.Mess(_(u'content of messages files :'))
f = open(fmsg, 'r')
print3(f.read())
f.close()
else:
run.Mess(_(u'messages file not found !'), '<A>_ALARM')
if iret == 0:
diag = 'OK'
else:
diag = '<E>_AGLA'
run.Mess(tit, diag)
run.timer.Stop(tit)
if 'exec_crp' in prof['actions']:
run.DBG(u'Start exec_crp action')
repsrc = osp.join(reptrav, 'sources')
reptmp = osp.join(reptrav, 'tmp')
fmsg = osp.join(reptrav, 'messages')
run.MkDir(repsrc)
tit = _(u'Copy of source files')
run.Mess(tit, 'TITLE')
run.timer.Start(tit)
lf = prof.Get('D', typ='f')
for rep in [l['path'] for l in lf]:
if run.IsDir(rep):
src = osp.join(rep, '*.f')
else:
src = rep
iret = run.Copy(repsrc, src)
lfun = prof.Get('D', typ='unig')
if lfun:
funig = lfun[0]
else:
funig = 'bidon'
run.timer.Stop(tit)
# command line
tit = _(u'Execution of CRP')
run.Mess(tit+_(u' (Programmation Rules Control)'), 'TITLE')
cmd = []
cmd.extend(conf['CRP'])
cmd.append(repsrc)
cmd.append(funig)
cmd.append(fmsg)
cmd.append(reptmp)
run.timer.Start(tit)
iret, output = run.Shell(' '.join(cmd), follow_output=True)
if osp.exists(fmsg):
run.Mess(_(u'content of messages files :'))
f = open(fmsg, 'r')
print3(f.read())
f.close()
else:
run.Mess(_(u'messages file not found !'), '<A>_ALARM')
if iret == 0:
diag = 'OK'
else:
diag = '<E>_CRP_ERROR'
run.Mess(tit, diag)
run.timer.Stop(tit)
# 4. ----- clean up
if 'make_env' in prof['actions'] and prof['detr_rep_trav'][0] not in NO_VALUES:
run.DoNotDelete(reptrav)
def StartNow(run, *args):
"""Start quickly a simple execution using files in arguments.
"""
if not run["silent"]:
run.Mess(_(u"This functionnality is still in a beta state of development "
u"and may be removed a future release, or may never be improved. "
u"Please use --silent option to ignore this message the next time."))
# ----- check argument
if not run.get('aster_vers'):
run.parser.error(_(u"You must define 'default_vers' in 'aster' configuration file or use '--vers' option."))
if len(args) < 1:
run.parser.error(_(u"'--%s' requires at least one argument") % run.current_action)
# build export
lf = [osp.abspath(f) for f in args]
prof = build_export_from_files(run, lf, with_results=True)
# debug mode is enabled using -g/--debug option
if run['debug']:
prof['debug'] = 'debug'
# development files
surch_pyt = run.get('surch_pyt', [])
if surch_pyt:
for obj in surch_pyt.split(','):
prof.Set('D', {
'path' : osp.abspath(obj), 'type' : 'py',
'ul' : 0, 'isrep' : osp.isdir(osp.abspath(obj)),
'compr' : False,
})
exetmp = None
surch_fort = run.get('surch_fort', [])
if surch_fort:
for obj in surch_fort.split(','):
prof.Set('D', {
'path' : osp.abspath(obj), 'type' : 'f',
'ul' : 0, 'isrep' : osp.isdir(osp.abspath(obj)),
'compr' : False,
})
exetmp = get_tmpname(run, run['tmp_user'], basename='executable')
prof.Set('DR', {
'path' : exetmp, 'type' : 'exec',
'ul' : 0, 'isrep' : False, 'compr' : False,
})
if exetmp is not None:
prof['actions'] = prof['actions'] + ['make_exec']
# try to grab all results files
if run["copy_all_results"]:
resudir = os.getcwdu()
lcomm = prof.get_type('comm')
if len(lcomm) > 0:
jobname = osp.splitext(osp.basename(lcomm[0].path))[0]
else:
jobname = 'unamed'
add_all_results(prof, resudir, jobname)
run.Mess(_(u"Profile used :"), 'TITLE')
run.Mess(os.linesep + prof.get_content(), 'SILENT')
# execution
RunAster(run, prof)
def StartTestNow(run, *args):
"""Start a testcase in interactive mode"""
# ----- check argument
if not run.get('aster_vers'):
run.parser.error(_(u"You must define 'default_vers' in 'aster' configuration file or use '--vers' option."))
if len(args) != 1:
run.parser.error(_(u"'--%s' requires exactly one argument") % run.current_action)
testcase = args[0]
prof = get_export(run, testcase)
# debug mode is enabled using -g/--debug option
if run['debug']:
prof['debug'] = 'debug'
conf = build_config_from_export(run, prof)
try:
addmem = float(conf['ADDMEM'][0])
except ValueError:
addmem = 0.
if not addmem:
return
memory = float(prof['memjob'][0] or 0.) / 1024. + addmem
prof.set_param_memory(memory)
run.Mess(_("starting %s") % testcase)
RunAster(run, prof)
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