/usr/share/pyshared/asrun/profil.py is in code-aster-run 1.13.1-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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# ==============================================================================
# COPYRIGHT (C) 1991 - 2003 EDF R&D WWW.CODE-ASTER.ORG
# THIS PROGRAM IS FREE SOFTWARE; YOU CAN REDISTRIBUTE IT AND/OR MODIFY
# IT UNDER THE TERMS OF THE GNU GENERAL PUBLIC LICENSE AS PUBLISHED BY
# THE FREE SOFTWARE FOUNDATION; EITHER VERSION 2 OF THE LICENSE, OR
# (AT YOUR OPTION) ANY LATER VERSION.
#
# THIS PROGRAM IS DISTRIBUTED IN THE HOPE THAT IT WILL BE USEFUL, BUT
# WITHOUT ANY WARRANTY; WITHOUT EVEN THE IMPLIED WARRANTY OF
# MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. SEE THE GNU
# GENERAL PUBLIC LICENSE FOR MORE DETAILS.
#
# YOU SHOULD HAVE RECEIVED A COPY OF THE GNU GENERAL PUBLIC LICENSE
# ALONG WITH THIS PROGRAM; IF NOT, WRITE TO EDF R&D CODE_ASTER,
# 1 AVENUE DU GENERAL DE GAULLE, 92141 CLAMART CEDEX, FRANCE.
# ==============================================================================
"""
Definition of AsterProfil class.
"""
import os
import os.path as osp
import re
from warnings import warn
from math import ceil
from asrun.core import magic
from asrun.common.i18n import _
from asrun.common_func import same_hosts2, is_localhost2
from asrun.common.utils import Enum, hms2s, YES, YES_VALUES
from asrun.common.sysutils import FileName, local_user, local_full_host, on_64bits, \
PASSWD_SEP, PATH_SEP, HOST_SEP
from asrun.mystring import print3, convert_list, split_endlines, ufmt
from asrun.backward_compatibility import bwc_deprecate_class
MODES = Enum("INTERACTIF", "BATCH")
def _dbg(*args, **kwargs):
"""Wrapper to run.DBG"""
if magic.run is None:
return
magic.run.DBG(*args, **kwargs)
class ExportEntry(FileName):
"""A FileName additionnal attributes."""
primary_key = ('user', 'host', 'path', 'type')
other_attrs = ('ul', 'compr', 'isrep')
def __init__(self, pathname=None, **attrs):
"""Initialization."""
super(ExportEntry, self).__init__(pathname)
self.data = attrs.get('data', False)
self.result = attrs.get('result', False)
self.type = attrs.get('type', 'libr')
self.ul = attrs.get('ul', 0)
self.compr = attrs.get('compr', False)
self.isrep = attrs.get('isrep', False)
#TODO make them properties to easily check values at assignment
def copy(self):
"""Return a new object with identical content."""
new = ExportEntry(self.repr(),
data=self.data, result=self.result,
type=self.type, ul=self.ul,
compr=self.compr, isrep=self.isrep)
return new
def check(self, checker):
"""Check the entry."""
if self.path.find('%') > -1:
checker.append(ufmt("invalid filename: %s", self.path))
return checker
def relocate(self, serv, newdir, user, convert=None):
"""Relocate the file/directory located on `serv` as if they were
locally in `newdir`. If `newdir` is None, just remove "user@host:"
before files.
`user` is used to connect to and check `serv` if provided."""
def _defconv(path):
return osp.basename(path)
if convert is None:
convert = _defconv
if serv is None or same_hosts2(serv, self.host, user, self.user):
self.host = ""
self.user = ""
if newdir is not None:
# paths of type 'nom' must not be renamed
if self.type == 'nom':
basn = _defconv(self.path)
else:
basn = convert(self.path)
_dbg(ufmt("relocate %s to %s", self._path, osp.join(newdir, basn)),
stack_id=2)
self.set_pathname(osp.join(newdir, basn))
def repr(self):
"""Return the entry as string."""
txt = ""
if self.passwd:
txt = PASSWD_SEP + self.passwd
if self.user:
txt = self.user + txt + HOST_SEP
if self.host:
txt += self.host + PATH_SEP
txt += self.get_path_text()
return txt
def __repr__(self):
"""Simple representation"""
txt = ""
if self.isrep:
txt += 'R '
else:
txt += 'F '
txt += self.type + ' ' + self.repr() + ' '
if self.data:
txt += 'D'
if self.result:
txt += 'R'
if self.compr:
txt += 'C'
txt += ' ' + str(self.ul)
return txt
def get_path_text(self):
"""Return the path as it is saved."""
return self._path or ''
def __get_path(self):
"""private get method"""
if is_localhost2(self.host):
return osp.expandvars(self._path)
else:
return self._path
def __set_path(self, value):
"""private set method"""
self._path = value
path = property(__get_path, __set_path)
class EntryCollection(object):
"""A collection of ExportEntry (list of files in an export)."""
_build_after_types = ('exec', 'cmde', 'ele', 'btc')
def __init__(self):
"""Initialization."""
# entries are stored in an ordered list.
self._entries = []
def index(self, entry):
"""Return the index of an entry in the collection (-1 if not
found)."""
ind = -1
for i, elt in enumerate(self._entries):
same = True
for k in ExportEntry.primary_key:
same = same and getattr(elt, k) == getattr(entry, k)
if same:
ind = i
break
return ind
def add(self, entry, stacklevel=2):
"""Add an entry into the collection."""
index = self.index(entry)
if index < 0:
self._entries.append(entry)
else:
existing = self._entries[index]
existing.data = existing.data or entry.data
existing.result = existing.result or entry.result
# these attributes should not change
for attr in ExportEntry.other_attrs:
if getattr(existing, attr) != getattr(entry, attr):
warn(ufmt(u"entry '%s' already exists and " \
"attribute '%s' differs from existing (previous '%s', new '%s').",
entry.path, attr, getattr(existing, attr), getattr(entry, attr)),
RuntimeWarning, stacklevel=stacklevel)
def remove(self, entry):
"""Remove an entry from the collection."""
index = self.index(entry)
if index < 0:
warn(ufmt(u"entry '%s' (type '%s') not found in collection", entry.path, entry.type),
RuntimeWarning, stacklevel=2)
else:
self._entries.pop(index)
def update(self, enum):
"""Extend the collection by adding each item of enum."""
for elt in enum:
self.add(elt)
def get_data(self):
"""Return a new collection restricted to datas."""
datas = EntryCollection()
datas.update([entry for entry in self if entry.data and \
not (entry.type in self._build_after_types \
and entry.result)])
return datas
def get_result(self):
"""Return a new collection restricted to results."""
results = EntryCollection()
results.update([entry for entry in self if entry.result])
return results
def get_type(self, type, with_completion=False):
"""Return two collections : the collection of entries of given type
and its completion if 'with_completion' is True."""
cres = EntryCollection()
cother = EntryCollection()
for entry in self:
if entry.type == type:
cres.add(entry)
else:
cother.add(entry)
if with_completion:
cres = (cres, cother)
return cres
def get_on_serv(self, serv, user=''):
"""Return a new collection of entries located on `serv`."""
new = EntryCollection()
new.update([entry for entry in self \
if same_hosts2(serv, entry.host, user, entry.user)])
return new
def topath(self):
"""Return all pathnames."""
return [entry.path for entry in self]
def check(self, checker):
"""Check each entry."""
for entry in self:
entry.check(checker)
return checker
def __iter__(self):
"""Iterator on entries."""
return iter(self._entries)
def __len__(self):
"""Return the number of entries."""
return len(self._entries)
def __getitem__(self, key):
"""Get an entry"""
return self._entries[key]
def __repr__(self):
"""Simple representation"""
txt = ["EntryCollection <%s>, list of entries path :" % hex(id(self)), ]
txt += [repr(entry) for entry in self]
return os.linesep.join(txt)
#TODO on pourrait mettre dans ce module des validateurs de profil selon
# l'utilisation : check_pour_get_results( il faut studyid + ...)
class AsterProfil:
"""Class to read and parse an exported ASTK profile.
Attributes :
_filename : absolute filename of the '.export' file
_content : content of the corresponding '.export' file
param : value of each parameters (type dict) (each param is a list)
args : arguments (type dict)
data : list of the files/directories which are datas
resu : list of the files/directories which are results
(each of data/resu is a dict of : path, ul, compr, type, isrep)
"""
def __init__(self, filename=None, run=None):
"""filename : filename of the '.export' file to read
run : AsterRun object (optional)
"""
# initialisations
self.collection = EntryCollection() #XXX should replace data and resu attributes
self.param = {}
self.args = {}
self.data = []
self.resu = []
self.agla = []
self._filename = None
self.set_filename(filename)
self.verbose = False
self.debug = False
self._content = None
# ----- reference to AsterRun object which manages the execution
self.run = run
if run != None:
self.verbose = run['verbose']
self.debug = run['debug']
if filename != None:
# check if file exists
if not osp.isfile(filename):
self._mess(ufmt(_(u'file not found : %s'), filename), '<A>_ALARM')
else:
# read the file
f = open(filename, 'r')
content = f.read()
f.close()
self.parse(content)
if self.debug:
print3('<DBG> <init> AsterProfil :')
print3(self)
def __repr__(self):
"""Pretty print content of the profile
"""
fmt = '%-20s = %s'
txt = []
txt.append(fmt % ('AsterProfil object', hex(id(self)) ))
txt.append(fmt % ('.filename', self._filename))
txt.append(self.get_content())
return os.linesep.join(convert_list(txt))
def __getitem__(self, key):
"""Return the value of parameter 'key', or '' if not exists
(so never raise KeyError exception).
"""
if self.param.has_key(key):
return self.param[key]
else:
return [""]
def has_param(self, key):
"""Tell if `key` is a known parameter"""
return self.param.has_key(key)
def get_version_path(self):
"""Return the path of the version used.
"""
label = self['version'][0]
if label == "":
path = ""
elif not self.run:
path = label
else:
path = self.run.get_version_path(label)
return path
def Get(self, DR, typ):
"""Return the list of datas (DR='D') or results (DR='R') or both (DR='DR')
of the type 'typ'
"""
lr = []
if DR == 'D':
what = self.data
elif DR == 'R':
what = self.resu
else:
what = self.data + self.resu
for entry in what:
if entry['type'] == typ:
lr.append(entry)
return lr
def get_base(self, DR):
"""If there is a base or bhdf in profile in datas/results, return
the type and if it's compressed or not.
"""
type_base, compress = None, None
base = self.Get(DR, typ='base')
if base:
type_base = 'base'
compress = base[0]['compr']
else:
base = self.Get(DR, typ='bhdf')
if base:
type_base = 'bhdf'
compress = base[0]['compr']
return type_base, compress
def get_jobname(self):
"""Return job name."""
return self["nomjob"][0]
def get_platform(self):
"""Return the platform (LINUX, LINUX64, TRU64, WIN32...)."""
return self['platform'][0] or self['plate-forme'][0]
def Set(self, DR, dico):
"""Add an entry defined in `dico` in .data/.resu.
"""
if DR == 'D':
l_what = [self.data]
elif DR == 'R':
l_what = [self.resu]
else:
l_what = [self.data, self.resu]
l_k = ('type', 'isrep', 'path', 'ul', 'compr')
for k in l_k:
if not dico.has_key(k):
self._mess(_(u"key '%s' missing") % k, '<F>_PROGRAM_ERROR')
dico['ul'] = int(dico['ul'])
for what in l_what:
what.append(dico)
# update content
self.update_content()
self._for_new_files()
def Del(self, DR, typ):
"""Delete entries of type 'typ' in .data/.resu.
"""
lobj = []
if DR.find('D') > -1:
for entry in self.data:
if entry['type'] != typ:
lobj.append(entry)
self.data = lobj
lobj = []
if DR.find('R') > -1:
for entry in self.resu:
if entry['type'] != typ:
lobj.append(entry)
self.resu = lobj
self._for_new_files()
def __setitem__(self, p, v):
"""Add the parameter 'p' with the value 'v'
"""
if self.debug and self.param.has_key(p):
print3('<DBG> (AS_PROFIL.setitem) force param['+p+'] = ', v)
if type(v) not in (list, tuple):
v = [v,]
self.param[p] = v
def __delitem__(self, p):
"""Delete the parameter 'p'
"""
if self.param.has_key(p):
del self.param[p]
def _mess(self, msg, cod='', store=False):
"""Just print a message
"""
if hasattr(self.run, 'Mess'):
self.run.Mess(msg, cod, store)
else:
print3('%-18s %s' % (cod, msg))
def parse(self, content):
"""Extract fields of config from 'content'
"""
for l in split_endlines(content):
if not re.search('^[ ]*#', l):
spl = l.split()
typ = ''
if len(spl) > 0:
typ = spl[0]
if typ not in ('A', 'P', 'F', 'R', 'N'):
self._mess(_(u'unexpected type : %s (filename: %s)') \
% (typ, self._filename), '<A>_ALARM')
else:
continue
if len(spl) >= 3:
if typ == 'P':
if self._check_deprecated_params(*spl[1:]) != 0:
continue
value = ' '.join(spl[2:])
if self.param.has_key(spl[1]):
self.param[spl[1]].append(value)
else:
self.param[spl[1]] = [value,]
elif typ == 'A':
value = ' '.join(spl[2:])
self.args[spl[1]] = value
elif typ == 'F' or typ == 'R':
if len(spl) >= 5:
dico = {
'type' : spl[1],
'path' : spl[2],
'isrep' : typ == 'R',
'ul' : int(spl[4]),
'compr' : spl[3].find('C') > -1,
}
if spl[3].find('D')>-1:
self.data.append(dico)
if spl[3].find('R')>-1:
self.resu.append(dico)
else:
self._mess(_(u'fields missing on line : %s') % l, '<A>_ALARM')
elif typ == 'N':
# just store agla fields
self.agla.append(spl)
elif len(spl) >= 2:
typ = spl[0]
if typ == 'A':
self.args[spl[1]] = ''
self._for_new_files()
self.update_content()
def copy(self):
"""Return a copy of the profile
"""
newp = self.__class__(None, self.run)
for attr in ('_filename', '_content'):
setattr(newp, attr, getattr(self, attr))
for attr in ('args', 'param'):
setattr(newp, attr, getattr(self, attr).copy())
for attr in ('data', 'resu'):
for dico in getattr(self, attr):
getattr(newp, attr).append(dico.copy())
for val in self.agla:
newp.agla.append(val[:])
newp._for_new_files()
return newp
def update(self, other):
"""Update the profile using values from 'other' :
- replace params and args
- add datas and results
"""
new_param = other.param.copy()
for key in new_param:
if new_param[key][0] in (None, ''):
del new_param[key]
self.param.update(new_param)
self.args.update(other.args)
self.data.extend(other.data)
self.resu.extend(other.resu)
self.agla.extend(other.agla)
self._for_new_files()
def update_content(self):
"""Fill 'content' attribute.
"""
txt = []
for p, dico in ('P', self.param), ('A', self.args):
sorted_keys = dico.keys()
sorted_keys.sort()
for key in sorted_keys:
l_val = dico[key]
if type(l_val) not in (list, tuple):
l_val = [l_val,]
for v in l_val:
txt.append(' '.join([p, key, str(v)]))
for dr, l_val in ('D', self.data), ('R', self.resu):
for d in l_val:
c = ' '
if d['compr']:
c = 'C'
fr = 'F'
if d['isrep']:
fr = 'R'
txt.append(' '.join([fr, d['type'], d['path'], dr+c, str(d['ul'])]))
for val in self.agla:
txt.append(' '.join(val))
txt.append('')
self._content = os.linesep.join(convert_list(txt))
def get_filename(self):
"""Return filename of profile.
"""
return self._filename
def set_filename(self, filename):
"""Change filename of profile.
"""
self._filename = filename
def get_content(self):
"""Return the content of the profile.
"""
self.update_content()
return self._content
def known_entries(self, fromlist):
"""Only keep from 'fromlist' entries present in this profile."""
newc = EntryCollection()
if fromlist is None:
fromlist = self.collection
for entry in fromlist:
# ignore entries not in current collection
if self.collection.index(entry) >= 0:
newc.add(entry)
return newc
def get_collection(self):
"""Return the EntryCollection."""
return self.collection
def get_on_serv(self, serv, user=''):
"""Return the collection of files located on `serv`."""
return self.collection.get_on_serv(serv, user)
def get_data(self):
"""Return the collection of datas."""
return self.collection.get_data()
def get_result(self):
"""Return the collection of results."""
return self.collection.get_result()
def get_type(self, type, with_completion=False):
"""Return the collection of entries of type `type`."""
return self.collection.get_type(type, with_completion)
def add(self, entry):
"""Add an entry to the collection."""
self.collection.add(entry)
self._compatibility()
def remove(self, entry):
"""Remove an entry from the collection."""
self.collection.remove(entry)
self._compatibility()
def check(self, error=True):
"""Check the profile"""
#TODO check parameters, checker object...
checker = []
self.collection.check(checker)
if error:
for msg in checker:
self._mess(msg, '<E>_ERROR')
if checker:
self._mess(_(u"Invalid profile content."), '<F>_ERROR')
return checker
def WriteExportTo(self, fich, dbg=False):
"""Write the export file represents this profile.
"""
self.set_filename(self._filename or fich)
self.update_content()
if self.debug or dbg:
print3('<DBG> <-- content of "%s"' % fich)
print3(self._content)
print3('<DBG> end of file -->')
try:
open(fich, 'w').write(self._content)
except IOError:
self._mess(ufmt(_(u'No write access to %s'), fich), '<F>_ERROR')
except Exception:
self._mess(ufmt(_(u'Can not write export file : %s'), fich), '<F>_ERROR')
def add_param_from_dict(self, dpara):
"""Add parameters and arguments to a profile.
"""
self.args['tpmax'] = dpara['tps_job']
self.args['memjeveux'] = dpara['memjeveux']
if dpara['memjeveux_stat'] != 0:
self.args['memjeveux_stat'] = dpara['memjeveux_stat']
new_para = {}
for key, val in dpara.items():
if self.args.has_key(key):
continue
if key == 'tps_job':
key = 'tpsjob'
val = ceil(val / 60.)
elif key == 'mem_job':
key = 'memjob'
val = val * 1024
if val != 0:
new_para[key] = [val,]
self.param.update(new_para)
def add_default_parameters(self):
"""Add default values in parameters to make the profile immediately runnable.
"""
if self.run:
self['version'] = self.run['aster_vers']
self['origine'] = 'ASTK %s' % self.run.__version__
self.set_param_time(hms2s(self.run['interactif_tpsmax']))
self.set_param_memory(self.run['interactif_memmax'])
else:
self.set_param_time(3600*24)
self.set_param_memory(2000) # < 2 GB for 32 bits platforms
# add default values
self['actions'] = "make_etude"
self['consbtc'] = YES
self['soumbtc'] = YES
self['mem_aster'] = 100
self['ncpus'] = 1
self['mpi_nbcpu'] = 1
self['mpi_nbnoeud'] = 1
self.set_running_mode(MODES.INTERACTIF)
def set_param_time(self, tsec):
"""Set time parameter in seconds."""
tsec = float(tsec)
self['time_limit'] = tsec
self['tpsjob'] = max(int(1.0 * tsec / 60), 1)
self.args['tpmax'] = tsec
_dbg('P time_limit: %s P tpsjob: %s A tpmax: %s' \
% (self['time_limit'][0], self['tpsjob'][0],
self.args['tpmax']))
def set_param_memory(self, memory):
"""Set memory parameter in MB."""
if on_64bits():
facW = 8
else:
facW = 4
memory = float(memory)
self['memory_limit'] = memory
self['memjob'] = int(memory * 1024)
ratio = (float(self['mem_aster'][0] or 100.)) / 100.
self.args['memjeveux'] = 1.0 * memory / facW * ratio
_dbg('P memory_limit: %s P memjob: %s A memjeveux: %s' \
% (self['memory_limit'][0], self['memjob'][0],
self.args['memjeveux']))
def set_param_limits(self):
"""Set memory and time limits"""
if self.has_param('memory_limit'):
self.set_param_memory(self['memory_limit'][0])
if self.has_param('time_limit'):
self.set_param_time(self['time_limit'][0])
def from_remote_server(self, ignore_types=None):
"""Change local pathnames to be visible from a remote server.
Do not change files/dirs of ignore_types."""
for entry in self.collection:
if entry.is_local():
entry.user = local_user
entry.host = local_full_host
self._compatibility()
def relocate(self, serv, newdir=None, user='', convert=None, fromlist=None):
"""Relocate the entries from 'fromlist' or all entries
if 'fromlist' is None."""
fromlist = self.known_entries(fromlist)
for entry in fromlist:
entry.relocate(serv, newdir, user, convert)
self._compatibility()
def absolutize_filename(self, export):
"""Change relative filenames to their absolute name relative to
the dirname of `export`."""
dirname = osp.dirname(export)
for entry in self.collection:
entry.path = osp.join(dirname, entry.path)
self._compatibility()
def set_running_mode(self, mode):
"""Set the running mode"""
# string assignment is used by the Aster & OM Salomé modules
if type(mode) is str:
mode = getattr(MODES, mode.upper(), -1)
if not MODES.exists(mode):
raise ValueError("not a valid mode : %s" % mode)
mode = MODES.get_id(mode).lower()
if self.run and self.run.get(mode) not in YES_VALUES:
mode = "interactif"
self["mode"] = mode
def get_timeout(self):
"""Return timeout value from profile.
"""
val = self['tpsjob'][0]
try:
timeout = int(float(val) * 60)
except Exception, msg:
raise Exception("%s\nException : %s" % (val, msg))
return timeout
def _check_deprecated_params(self, key, *values):
"""Check and warn about deprecated entries."""
if key == 'xterm':
warn("'xterm' parameter is deprecated in .export. "
"'terminal' value is taken from the configuration and used instead.",
DeprecationWarning, stacklevel=3)
return 1
if key == 'flashdir':
warn("'flashdir' parameter is deprecated in .export. "
"It should be now given as a directory entry of type 'flash'.",
DeprecationWarning, stacklevel=3)
dico = {
'type' : 'flash',
'path' : values[0],
'isrep' : True,
'ul' : 0,
'compr' : False,
}
self.resu.append(dico)
return 1
return 0
# transitionnal functions during refactoring : data/resu will be removed
def _for_new_files(self):
"""Fill .collection from .data/.resu.
Must be called by any function modifying .data/.resu attrs."""
self.collection = EntryCollection()
for dico in self.data:
self.collection.add(ExportEntry(dico['path'], data=True, **dico),
stacklevel=3)
for dico in self.resu:
self.collection.add(ExportEntry(dico['path'], result=True, **dico),
stacklevel=3)
def _compatibility(self):
"""Fill .data/.resu from .collection.
Must be called by any function modifying the new _files attribute."""
self.data = []
self.resu = []
for entry in self.collection:
dico = {
'path' : entry.repr(),
'type' : entry.type,
'ul' : entry.ul,
'isrep' : entry.isrep,
'compr' : entry.compr,
}
if entry.data:
self.data.append(dico)
if entry.result:
self.resu.append(dico)
ASTER_PROFIL = bwc_deprecate_class('ASTER_PROFIL', AsterProfil)
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