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<li><a class="reference internal" href="#">The xsh_2dmap recipe</a><ul>
<li><a class="reference internal" href="#synopsis">Synopsis</a></li>
<li><a class="reference internal" href="#description">Description</a></li>
<li><a class="reference internal" href="#constructor">Constructor</a></li>
<li><a class="reference internal" href="#parameters">Parameters</a></li>
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<div class="section" id="the-xsh-2dmap-recipe">
<h1>The xsh_2dmap recipe<a class="headerlink" href="#the-xsh-2dmap-recipe" title="Permalink to this headline">¶</a></h1>
<dl class="data">
<dt id="xsh_2dmap">
<tt class="descname">xsh_2dmap</tt><a class="headerlink" href="#xsh_2dmap" title="Permalink to this definition">¶</a></dt>
<dd></dd></dl>
<div class="section" id="synopsis">
<h2>Synopsis<a class="headerlink" href="#synopsis" title="Permalink to this headline">¶</a></h2>
<p>Creates a wavelength and spatial resampling solution, a clean arc line list</p>
</div>
<div class="section" id="description">
<h2>Description<a class="headerlink" href="#description" title="Permalink to this headline">¶</a></h2>
<p>This recipe creates a wavelength and spatial resampling solution, a clean arc line list.</p>
<blockquote>
<div>a residual map and a wave map.</div></blockquote>
<dl class="docutils">
<dt>Input Frames:</dt>
<dd><blockquote class="first">
<div>Raw Frame (Tag = WAVE_arm)
Arc Line List (Tag = ARC_LINE_LIST_arm)
Order Table (Tag = ORDER_TAB_EDGES_arm)
Master Bias (Tag = MASTER_BIAS_arm)
[poly mode] Wave Solution (Tag = WAVE_TAB_GUESS_arm)
[poly mode] Theoretical Map (Tag = THEO_TAB_MULT_arm)
[physical model mode] model cfg table (Tag = XSH_MOD_CFG_OPT_FMT_arm)
[OPTIONAL] Master Dark (Tag = MASTER_DARK_arm)
[OPTIONAL] Non-linear Bad Pixel Map (Tag = BP_MAP_NL_arm)
[OPTIONAL] Reference Bad Pixel Map (Tag = BP_MAP_RP_arm)
[OPTIONAL] Reference list to monitor line intensity (Tag = ARC_LINE_LIST_INTMON_arm)</div></blockquote>
<p class="last">Prepare the frames.</p>
</dd>
<dt>For UVB,VIS:</dt>
<dd><p class="first">Subtract Master Bias.</p>
<p class="last">Subtract Master Dark.</p>
</dd>
<dt>For NIR:</dt>
<dd><p class="first">Subtract ON OFF
Compute Wavelength Solution, clean arc line list, residual table, wave map
Products:</p>
<blockquote class="last">
<div>Wavelength table solution, PRO.CATG = WAVE_TAB_2D_arm [poly mode]
A Residual tab, PRO.CATG=WAVE_RESID_TAB_SLIT_arm
A Wavelelength image map, PRO.CATG=WAVE_MAP_arm. [if model-wavemap-compute=TRUE]
A Slit image map, PRO.CATG=SLIT_MAP_NIR [if model-wavemap-compute=TRUE]
A Dispersion solution table, PRO.CATG=DISP_TAB_NIR
An Arc frame in pre format bias subtracted,
PRO.CATG=WAVE_ON_arm
The optimized model cfg frame, PRO.CATG=XSH_MOD_CFG_OPT_2D_arm [if physical model mode].</div></blockquote>
</dd>
</dl>
</div>
<div class="section" id="constructor">
<h2>Constructor<a class="headerlink" href="#constructor" title="Permalink to this headline">¶</a></h2>
<dl class="method">
<dt>
<tt class="descclassname">cpl.</tt><tt class="descname">Recipe</tt><big>(</big><em>"xsh_2dmap"</em><big>)</big></dt>
<dd><p>Create an object for the recipe xsh_2dmap.</p>
</dd></dl>
<div class="highlight-python"><div class="highlight"><pre><span class="kn">import</span> <span class="nn">cpl</span>
<span class="n">xsh_2dmap</span> <span class="o">=</span> <span class="n">cpl</span><span class="o">.</span><span class="n">Recipe</span><span class="p">(</span><span class="s">"xsh_2dmap"</span><span class="p">)</span>
</pre></div>
</div>
</div>
<div class="section" id="parameters">
<h2>Parameters<a class="headerlink" href="#parameters" title="Permalink to this headline">¶</a></h2>
<dl class="attribute">
<dt id="xsh_2dmap.param.keep_temp">
<tt class="descclassname">xsh_2dmap.param.</tt><tt class="descname">keep_temp</tt><a class="headerlink" href="#xsh_2dmap.param.keep_temp" title="Permalink to this definition">¶</a></dt>
<dd><p>If ‘no’, temporary files are deleted. (str; default: ‘no’) [default=”no”].</p>
</dd></dl>
<dl class="attribute">
<dt id="xsh_2dmap.param.debug_level">
<tt class="descclassname">xsh_2dmap.param.</tt><tt class="descname">debug_level</tt><a class="headerlink" href="#xsh_2dmap.param.debug_level" title="Permalink to this definition">¶</a></dt>
<dd><p>Additional xshooter debug level. One of ‘none’, ‘low’, ‘medium’, ‘high’ (str; default: ‘none’) [default=”none”].</p>
</dd></dl>
<dl class="attribute">
<dt id="xsh_2dmap.param.time_stamp">
<tt class="descclassname">xsh_2dmap.param.</tt><tt class="descname">time_stamp</tt><a class="headerlink" href="#xsh_2dmap.param.time_stamp" title="Permalink to this definition">¶</a></dt>
<dd><p>Add timestamp to product file name. (bool; default: False) [default=False].</p>
</dd></dl>
<dl class="attribute">
<dt id="xsh_2dmap.param.decode_bp">
<tt class="descclassname">xsh_2dmap.param.</tt><tt class="descname">decode_bp</tt><a class="headerlink" href="#xsh_2dmap.param.decode_bp" title="Permalink to this definition">¶</a></dt>
<dd><p>Integer representation of the bits to be considered bad when decoding the bad pixel mask pixel values. (long; default: 2144337919) [default=2144337919].</p>
</dd></dl>
<dl class="attribute">
<dt id="xsh_2dmap.param.pre_overscan_corr">
<tt class="descclassname">xsh_2dmap.param.</tt><tt class="descname">pre_overscan_corr</tt><a class="headerlink" href="#xsh_2dmap.param.pre_overscan_corr" title="Permalink to this definition">¶</a></dt>
<dd><p>pre-overscan correction.0: no correction1: mean overscan correction2: mean prescan correction3: (mean pre+mean overscan)/2 correction (long; default: 1) [default=1].</p>
</dd></dl>
<dl class="attribute">
<dt id="xsh_2dmap.param.detectarclines_fit_win_hsize">
<tt class="descclassname">xsh_2dmap.param.</tt><tt class="descname">detectarclines_fit_win_hsize</tt><a class="headerlink" href="#xsh_2dmap.param.detectarclines_fit_win_hsize" title="Permalink to this definition">¶</a></dt>
<dd><p>Half window size (HWS) in pixels for the line 2D fitting window (total window size = 2*HWS+1) (long; default: 6) [default=6].</p>
</dd></dl>
<dl class="attribute">
<dt id="xsh_2dmap.param.detectarclines_search_win_hsize">
<tt class="descclassname">xsh_2dmap.param.</tt><tt class="descname">detectarclines_search_win_hsize</tt><a class="headerlink" href="#xsh_2dmap.param.detectarclines_search_win_hsize" title="Permalink to this definition">¶</a></dt>
<dd><p>Half window size (HWS) in pixels for the line search box around the expected position (total window size = 2*HWS+1) [bin units] (long; default: 3) [default=3].</p>
</dd></dl>
<dl class="attribute">
<dt id="xsh_2dmap.param.detectarclines_running_median_hsize">
<tt class="descclassname">xsh_2dmap.param.</tt><tt class="descname">detectarclines_running_median_hsize</tt><a class="headerlink" href="#xsh_2dmap.param.detectarclines_running_median_hsize" title="Permalink to this definition">¶</a></dt>
<dd><p>Half window size in pixels (HWS) for the running median box (long; default: 0) [default=0].</p>
</dd></dl>
<dl class="attribute">
<dt id="xsh_2dmap.param.detectarclines_wavesol_deg_lambda">
<tt class="descclassname">xsh_2dmap.param.</tt><tt class="descname">detectarclines_wavesol_deg_lambda</tt><a class="headerlink" href="#xsh_2dmap.param.detectarclines_wavesol_deg_lambda" title="Permalink to this definition">¶</a></dt>
<dd><p>Degree in lambda in the polynomial solution X=f(lambda,order,slit) and Y=f(lambda,order,slit) (POLY mode) (long; default: 5) [default=5].</p>
</dd></dl>
<dl class="attribute">
<dt id="xsh_2dmap.param.detectarclines_wavesol_deg_order">
<tt class="descclassname">xsh_2dmap.param.</tt><tt class="descname">detectarclines_wavesol_deg_order</tt><a class="headerlink" href="#xsh_2dmap.param.detectarclines_wavesol_deg_order" title="Permalink to this definition">¶</a></dt>
<dd><p>Degree in order in the polynomial solution X=f(lambda,order,slit) and Y=f(lambda,order,slit) (POLY mode) (long; default: 4) [default=4].</p>
</dd></dl>
<dl class="attribute">
<dt id="xsh_2dmap.param.detectarclines_wavesol_deg_slit">
<tt class="descclassname">xsh_2dmap.param.</tt><tt class="descname">detectarclines_wavesol_deg_slit</tt><a class="headerlink" href="#xsh_2dmap.param.detectarclines_wavesol_deg_slit" title="Permalink to this definition">¶</a></dt>
<dd><p>Degree in slit in the polynomial solution X=f(lambda,order,slit) and Y=f(lambda,order,slit) (POLY mode) (long; default: 1) [default=1].</p>
</dd></dl>
<dl class="attribute">
<dt id="xsh_2dmap.param.detectarclines_min_sn">
<tt class="descclassname">xsh_2dmap.param.</tt><tt class="descname">detectarclines_min_sn</tt><a class="headerlink" href="#xsh_2dmap.param.detectarclines_min_sn" title="Permalink to this definition">¶</a></dt>
<dd><p>Minimum signal-to-noise ratio to filter lines [xsh_predict: UVB,VIS=5,NIR=4; xsh_2dmap: UVB=3, VIS=6, NIR=10] (float; default: 5.0) [default=5.0].</p>
</dd></dl>
<dl class="attribute">
<dt id="xsh_2dmap.param.detectarclines_find_lines_center">
<tt class="descclassname">xsh_2dmap.param.</tt><tt class="descname">detectarclines_find_lines_center</tt><a class="headerlink" href="#xsh_2dmap.param.detectarclines_find_lines_center" title="Permalink to this definition">¶</a></dt>
<dd><p>Method used to find the center of the lines: gaussian, barycenter. Gaussian method applies a Gaussian fit to the line. Barycenter method computes the line centroid. (str; default: ‘gaussian’) [default=”gaussian”].</p>
</dd></dl>
<dl class="attribute">
<dt id="xsh_2dmap.param.detectarclines_clip_sigma">
<tt class="descclassname">xsh_2dmap.param.</tt><tt class="descname">detectarclines_clip_sigma</tt><a class="headerlink" href="#xsh_2dmap.param.detectarclines_clip_sigma" title="Permalink to this definition">¶</a></dt>
<dd><p>Kappa value in sigma clipping during the polynomial solution fit (POLY mode) (float; default: 2.0) [default=2.0].</p>
</dd></dl>
<dl class="attribute">
<dt id="xsh_2dmap.param.detectarclines_clip_niter">
<tt class="descclassname">xsh_2dmap.param.</tt><tt class="descname">detectarclines_clip_niter</tt><a class="headerlink" href="#xsh_2dmap.param.detectarclines_clip_niter" title="Permalink to this definition">¶</a></dt>
<dd><p>Number of iterations in sigma clipping during the polynomial solution fit (POLY mode) (long; default: 0) [default=0].</p>
</dd></dl>
<dl class="attribute">
<dt id="xsh_2dmap.param.detectarclines_clip_frac">
<tt class="descclassname">xsh_2dmap.param.</tt><tt class="descname">detectarclines_clip_frac</tt><a class="headerlink" href="#xsh_2dmap.param.detectarclines_clip_frac" title="Permalink to this definition">¶</a></dt>
<dd><p>Minimal fractions of bad pixel allowed in sigma clipping duringthe polynomial solution fit (POLY mode) (float; default: 0.7) [default=0.7].</p>
</dd></dl>
<dl class="attribute">
<dt id="xsh_2dmap.param.dispersol_deg_x">
<tt class="descclassname">xsh_2dmap.param.</tt><tt class="descname">dispersol_deg_x</tt><a class="headerlink" href="#xsh_2dmap.param.dispersol_deg_x" title="Permalink to this definition">¶</a></dt>
<dd><p>Degree in X in the polynomial dispersion solution lambda=f(X,Y) and slit=f(X,Y) (long; default: 4) [default=4].</p>
</dd></dl>
<dl class="attribute">
<dt id="xsh_2dmap.param.dispersol_deg_y">
<tt class="descclassname">xsh_2dmap.param.</tt><tt class="descname">dispersol_deg_y</tt><a class="headerlink" href="#xsh_2dmap.param.dispersol_deg_y" title="Permalink to this definition">¶</a></dt>
<dd><p>Degree in Y in the polynomial dispersion solution lambda=f(X,Y) and slit=f(X,Y) (long; default: 5) [default=5].</p>
</dd></dl>
<dl class="attribute">
<dt id="xsh_2dmap.param.model_maxit">
<tt class="descclassname">xsh_2dmap.param.</tt><tt class="descname">model_maxit</tt><a class="headerlink" href="#xsh_2dmap.param.model_maxit" title="Permalink to this definition">¶</a></dt>
<dd><p>Number/10 of annealing iterations (physical model mode). (long; default: 500) [default=500].</p>
</dd></dl>
<dl class="attribute">
<dt id="xsh_2dmap.param.model_anneal_factor">
<tt class="descclassname">xsh_2dmap.param.</tt><tt class="descname">model_anneal_factor</tt><a class="headerlink" href="#xsh_2dmap.param.model_anneal_factor" title="Permalink to this definition">¶</a></dt>
<dd><p>Multiplier applied to the automatic parameter ranges (i.e. when scenario!=0). For routine operations should be 1.0. (physical model mode). (float; default: 1.0) [default=1.0].</p>
</dd></dl>
<dl class="attribute">
<dt id="xsh_2dmap.param.model_scenario">
<tt class="descclassname">xsh_2dmap.param.</tt><tt class="descname">model_scenario</tt><a class="headerlink" href="#xsh_2dmap.param.model_scenario" title="Permalink to this definition">¶</a></dt>
<dd><p>selects preset flag and range combinations appropriate to common scenarios: 0 - No scenario, input cfg flags and limitsused. 1 - scenario appropriate for the startuprecipe (large ranges for parameters affecting single ph exposures, dist coeff fixed) 2 - Like 1, but includes parameters affecting all ph positions 3 - Scenario for use in fine tuning cfg to match routine single pinhole exposures. All parameters affecting 1ph exposures except dist coeffs are included and parameter ranges are small. (For use by predict in 1ph case). 4 - Like 3 but includes parameters affecting all ph positions (Standard for use by predict in 9ph case and 2dmap). (long; default: 4) [default=4].</p>
</dd></dl>
<p>The following code snippet shows the default settings for the available
parameters.</p>
<div class="highlight-python"><div class="highlight"><pre><span class="kn">import</span> <span class="nn">cpl</span>
<span class="n">xsh_2dmap</span> <span class="o">=</span> <span class="n">cpl</span><span class="o">.</span><span class="n">Recipe</span><span class="p">(</span><span class="s">"xsh_2dmap"</span><span class="p">)</span>
<span class="n">xsh_2dmap</span><span class="o">.</span><span class="n">param</span><span class="o">.</span><span class="n">keep_temp</span> <span class="o">=</span> <span class="s">"no"</span>
<span class="n">xsh_2dmap</span><span class="o">.</span><span class="n">param</span><span class="o">.</span><span class="n">debug_level</span> <span class="o">=</span> <span class="s">"none"</span>
<span class="n">xsh_2dmap</span><span class="o">.</span><span class="n">param</span><span class="o">.</span><span class="n">time_stamp</span> <span class="o">=</span> <span class="bp">False</span>
<span class="n">xsh_2dmap</span><span class="o">.</span><span class="n">param</span><span class="o">.</span><span class="n">decode_bp</span> <span class="o">=</span> <span class="mi">2144337919</span>
<span class="n">xsh_2dmap</span><span class="o">.</span><span class="n">param</span><span class="o">.</span><span class="n">pre_overscan_corr</span> <span class="o">=</span> <span class="mi">1</span>
<span class="n">xsh_2dmap</span><span class="o">.</span><span class="n">param</span><span class="o">.</span><span class="n">detectarclines_fit_win_hsize</span> <span class="o">=</span> <span class="mi">6</span>
<span class="n">xsh_2dmap</span><span class="o">.</span><span class="n">param</span><span class="o">.</span><span class="n">detectarclines_search_win_hsize</span> <span class="o">=</span> <span class="mi">3</span>
<span class="n">xsh_2dmap</span><span class="o">.</span><span class="n">param</span><span class="o">.</span><span class="n">detectarclines_running_median_hsize</span> <span class="o">=</span> <span class="mi">0</span>
<span class="n">xsh_2dmap</span><span class="o">.</span><span class="n">param</span><span class="o">.</span><span class="n">detectarclines_wavesol_deg_lambda</span> <span class="o">=</span> <span class="mi">5</span>
<span class="n">xsh_2dmap</span><span class="o">.</span><span class="n">param</span><span class="o">.</span><span class="n">detectarclines_wavesol_deg_order</span> <span class="o">=</span> <span class="mi">4</span>
<span class="n">xsh_2dmap</span><span class="o">.</span><span class="n">param</span><span class="o">.</span><span class="n">detectarclines_wavesol_deg_slit</span> <span class="o">=</span> <span class="mi">1</span>
<span class="n">xsh_2dmap</span><span class="o">.</span><span class="n">param</span><span class="o">.</span><span class="n">detectarclines_min_sn</span> <span class="o">=</span> <span class="mf">5.0</span>
<span class="n">xsh_2dmap</span><span class="o">.</span><span class="n">param</span><span class="o">.</span><span class="n">detectarclines_find_lines_center</span> <span class="o">=</span> <span class="s">"gaussian"</span>
<span class="n">xsh_2dmap</span><span class="o">.</span><span class="n">param</span><span class="o">.</span><span class="n">detectarclines_clip_sigma</span> <span class="o">=</span> <span class="mf">2.0</span>
<span class="n">xsh_2dmap</span><span class="o">.</span><span class="n">param</span><span class="o">.</span><span class="n">detectarclines_clip_niter</span> <span class="o">=</span> <span class="mi">0</span>
<span class="n">xsh_2dmap</span><span class="o">.</span><span class="n">param</span><span class="o">.</span><span class="n">detectarclines_clip_frac</span> <span class="o">=</span> <span class="mf">0.7</span>
<span class="n">xsh_2dmap</span><span class="o">.</span><span class="n">param</span><span class="o">.</span><span class="n">dispersol_deg_x</span> <span class="o">=</span> <span class="mi">4</span>
<span class="n">xsh_2dmap</span><span class="o">.</span><span class="n">param</span><span class="o">.</span><span class="n">dispersol_deg_y</span> <span class="o">=</span> <span class="mi">5</span>
<span class="n">xsh_2dmap</span><span class="o">.</span><span class="n">param</span><span class="o">.</span><span class="n">model_maxit</span> <span class="o">=</span> <span class="mi">500</span>
<span class="n">xsh_2dmap</span><span class="o">.</span><span class="n">param</span><span class="o">.</span><span class="n">model_anneal_factor</span> <span class="o">=</span> <span class="mf">1.0</span>
<span class="n">xsh_2dmap</span><span class="o">.</span><span class="n">param</span><span class="o">.</span><span class="n">model_scenario</span> <span class="o">=</span> <span class="mi">4</span>
</pre></div>
</div>
<p>You may also set or overwrite some or all parameters by the recipe
parameter <cite>param</cite>, as shown in the following example:</p>
<div class="highlight-python"><div class="highlight"><pre><span class="kn">import</span> <span class="nn">cpl</span>
<span class="n">xsh_2dmap</span> <span class="o">=</span> <span class="n">cpl</span><span class="o">.</span><span class="n">Recipe</span><span class="p">(</span><span class="s">"xsh_2dmap"</span><span class="p">)</span>
<span class="p">[</span><span class="o">...</span><span class="p">]</span>
<span class="n">res</span> <span class="o">=</span> <span class="n">xsh_2dmap</span><span class="p">(</span> <span class="o">...</span><span class="p">,</span> <span class="n">param</span> <span class="o">=</span> <span class="p">{</span><span class="s">"keep_temp"</span><span class="p">:</span><span class="s">"no"</span><span class="p">,</span> <span class="s">"debug_level"</span><span class="p">:</span><span class="s">"none"</span><span class="p">})</span>
</pre></div>
</div>
<div class="admonition seealso">
<p class="first admonition-title">See also</p>
<p class="last"><a class="reference external" href="http://packages.python.org/python-cpl/recipe.html">cpl.Recipe</a>
for more information about the recipe object.</p>
</div>
</div>
<div class="section" id="bug-reports">
<h2>Bug reports<a class="headerlink" href="#bug-reports" title="Permalink to this headline">¶</a></h2>
<p>Please report any problems to <a class="reference external" href="mailto:amodigli%40eso.org">R<span>.</span> Haigron, P<span>.</span> Bristow, D<span>.</span> Bramich, A<span>.</span> Modigliani</a>. Alternatively, you may
send a report to the <a class="reference external" href="mailto:usd-help%40eso.org">ESO User Support Department</a>.</p>
</div>
<div class="section" id="copyright">
<h2>Copyright<a class="headerlink" href="#copyright" title="Permalink to this headline">¶</a></h2>
<p>This file is part of the X-shooter Instrument Pipeline
Copyright (C) 2006 European Southern Observatory</p>
<p>This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.</p>
<p>This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.</p>
<p>You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston,
MA 02111-1307 USA</p>
<p><em>Code author: R. Haigron, P. Bristow, D. Bramich, A. Modigliani <<a class="reference external" href="mailto:amodigli%40eso.org">amodigli<span>@</span>eso<span>.</span>org</a>></em></p>
</div>
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