/usr/share/dynare/matlab/parallel/masterParallel.m is in dynare-common 4.4.1-1build1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743 744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761 762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779 780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797 798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815 816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833 834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851 852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867 868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885 | function [fOutVar,nBlockPerCPU, totCPU] = masterParallel(Parallel,fBlock,nBlock,NamFileInput,fname,fInputVar,fGlobalVar,Parallel_info,initialize)
% PARALLEL CONTEXT
% This is the most important function for the management of DYNARE parallel
% computing.
% It is the top-level function called on the master computer when parallelizing a task.
% This function has two main computational strategies for managing the matlab worker (slave process).
% 0 Simple Close/Open Stategy:
% In this case the new Matlab instances (slave process) are open when
% necessary and then closed. This can happen many times during the
% simulation of a model.
% 1 Always Open Strategy:
% In this case we have a more sophisticated management of slave processes,
% which are no longer closed at the end of each job. The slave processes
% wait for a new job (if it exists). If a slave does not receive a new job after a
% fixed time it is destroyed. This solution removes the computational
% time necessary to Open/Close new Matlab instances.
% The first (point 0) is the default Strategy
% i.e.(Parallel_info.leaveSlaveOpen=0). This value can be changed by the
% user in xxx.mod file or it is changed by the programmer if it is necessary to
% reduce the overall computational time. See for example the
% prior_posterior_statistics.m.
% The number of parallelized threads will be equal to (nBlock-fBlock+1).
%
% INPUTS
% o Parallel [struct vector] copy of options_.parallel
% o fBlock [int] index number of the first thread
% (between 1 and nBlock)
% o nBlock [int] index number of the last thread
% o NamFileInput [cell array] contains the list of input files to be
% copied in the working directory of remote slaves
% 2 columns, as many lines as there are files
% - first column contains directory paths
% - second column contains filenames
% o fname [string] name of the function to be parallelized, and
% which will be run on the slaves
% o fInputVar [struct] structure containing local variables to be used
% by fName on the slaves
% o fGlobalVar [struct] structure containing global variables to be used
% by fName on the slaves
% o Parallel_info []
% o initialize []
%
% OUTPUT
% o fOutVar [struct vector] result of the parallel computation, one
% struct per thread
% o nBlockPerCPU [int vector] for each CPU used, indicates the number of
% threads run on that CPU
% o totCPU [int] total number of CPUs used (can be lower than
% the number of CPUs declared in "Parallel", if
% the number of required threads is lower)
% Copyright (C) 2009-2013 Dynare Team
%
% This file is part of Dynare.
%
% Dynare is free software: you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation, either version 3 of the License, or
% (at your option) any later version.
%
% Dynare is distributed in the hope that it will be useful,
% but WITHOUT ANY WARRANTY; without even the implied warranty of
% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
% GNU General Public License for more details.
%
% You should have received a copy of the GNU General Public License
% along with Dynare. If not, see <http://www.gnu.org/licenses/>.
% If islocal==0, create a new directory for remote computation.
% This directory is named using current data and time,
% is used only one time and then deleted.
persistent PRCDir
% PRCDir = Present Remote Computational Directory!
Strategy=Parallel_info.leaveSlaveOpen;
islocal = 1;
isHybridMatlabOctave = Parallel_info.isHybridMatlabOctave;
for j=1:length(Parallel),
islocal=islocal*Parallel(j).Local;
end
if nargin>8 && initialize==1
if islocal == 0,
PRCDir=CreateTimeString();
assignin('base','PRCDirTmp',PRCDir),
evalin('base','options_.parallel_info.RemoteTmpFolder=PRCDirTmp;')
evalin('base','clear PRCDirTmp,')
else
% Delete the traces (if existing) of last local session of computations.
mydelete(['slaveParallel_input*.mat']);
end
return
end
if isfield(Parallel_info,'local_files')
if isempty(NamFileInput),
NamFileInput=Parallel_info.local_files;
else
NamFileInput=[NamFileInput;Parallel_info.local_files];
end
end
% Deactivate some 'Parallel/Warning' messages in Octave!
% Comment the line 'warning('off');' in order to view the warning messages
% in Octave!
if isoctave
warning('off');
end
% check if there are function_handles in the input or global vars when
% octave is used
if isHybridMatlabOctave || isoctave
fInputNames = fieldnames(fInputVar);
for j=1:length(fInputNames),
TargetVar = fInputVar.(fInputNames{j});
if isa(TargetVar,'function_handle'),
TargetVar=func2str(TargetVar);
fInputVar.(fInputNames{j})=TargetVar;
end
end
if exist('fGlobalVar') && ~isempty(fGlobalVar),
fInputNames = fieldnames(fGlobalVar);
for j=1:length(fInputNames),
TargetVar = fGlobalVar.(fInputNames{j});
if isa(TargetVar,'function_handle'),
TargetVar=func2str(TargetVar);
fGlobalVar.(fInputNames{j})=TargetVar;
end
end
end
end
if Strategy==1
totCPU=0;
end
% Determine my hostname and my working directory.
DyMo=pwd;
% fInputVar.DyMo=DyMo;
if ispc, % ~(isunix || (~matlab_ver_less_than('7.4') && ismac)) ,
[tempo, MasterName]=system('hostname');
MasterName=deblank(MasterName);
end
% fInputVar.MasterName = MasterName;
% Save input data for use by the slaves.
switch Strategy
case 0
storeGlobalVars([fname,'_input.mat']);
save([fname,'_input.mat'],'fInputVar','Parallel','-append')
case 1
if exist('fGlobalVar'),
save(['temp_input.mat'],'fInputVar','fGlobalVar')
else
save(['temp_input.mat'],'fInputVar')
end
save(['temp_input.mat'],'Parallel','-append')
closeSlave(Parallel,PRCDir,-1);
end
% Determine the total number of available CPUs, and the number of threads
% to run on each CPU.
[nCPU, totCPU, nBlockPerCPU, totSlaves] = distributeJobs(Parallel, fBlock, nBlock);
for j=1:totSlaves,
PRCDirSnapshot{j}={};
end
offset0 = fBlock-1;
% Clean up remnants of previous runs.
mydelete(['comp_status_',fname,'*.mat']);
mydelete(['P_',fname,'*End.txt']);
mydelete([fname,'_output_*.mat']);
mydelete('slaveParallel_break.mat');
dynareParallelDelete([fname,'_output_*.mat'],PRCDir,Parallel);
dynareParallelDelete(['comp_status_',fname,'*.mat'],PRCDir,Parallel);
dynareParallelDelete('slaveParallel_break.mat',PRCDir,Parallel);
% Create a shell script containing the commands to launch the required
% tasks on the slaves.
fid = fopen('ConcurrentCommand1.bat','w+');
% Create the directory devoted to remote computation.
if isempty(PRCDir) && ~islocal,
error('PRCDir not initialized!')
else
dynareParallelMkDir(PRCDir,Parallel(1:totSlaves));
end
% Testing Zone
% 1. Display the User Strategy:
% if Strategy==0
% disp('User Strategy Now Is Open/Close (0)');
% else
% disp('User Strategy Now Is Always Open (1)');
% end
% 2. Display the output of 'NEW' distributeJobs.m:
%
% fBlock
% nBlock
%
%
% nCPU
% totCPU
% nBlockPerCPU
% totSlaves
%
% keyboard
% End
for j=1:totCPU,
if Strategy==1
command1 = ' ';
end
indPC=min(find(nCPU>=j));
% According to the information contained in configuration file, compThread can limit MATLAB
% to a single computational thread. By default, MATLAB makes use of the multithreading
% capabilities of the computer on which it is running. Nevertheless
% exsperimental results show as matlab native
% multithreading limit the performaces when the parallel computing is active.
if strcmp('true',Parallel(indPC).SingleCompThread),
compThread = '-singleCompThread';
else
compThread = '';
end
if indPC>1
nCPU0 = nCPU(indPC-1);
else
nCPU0=0;
end
offset = sum(nBlockPerCPU(1:j-1))+offset0;
% Create a file used to monitoring if a parallel block (core)
% computation is finished or not.
fid1=fopen(['P_',fname,'_',int2str(j),'End.txt'],'w+');
fclose(fid1);
if Strategy==1,
fblck = offset+1;
nblck = sum(nBlockPerCPU(1:j));
save temp_input.mat fblck nblck fname -append;
copyfile('temp_input.mat',['slaveJob',int2str(j),'.mat']);
if Parallel(indPC).Local ==0,
fid1=fopen(['stayalive',int2str(j),'.txt'],'w+');
fclose(fid1);
dynareParallelSendFiles(['stayalive',int2str(j),'.txt'],PRCDir,Parallel(indPC));
mydelete(['stayalive',int2str(j),'.txt']);
end
% Wait for possibly local alive CPU to start the new job or close by
% internal criteria.
pause(1);
newInstance = 0;
% Check if j CPU is already alive.
if isempty(dynareParallelDir(['P_slave_',int2str(j),'End.txt'],PRCDir,Parallel(indPC)));
fid1=fopen(['P_slave_',int2str(j),'End.txt'],'w+');
fclose(fid1);
if Parallel(indPC).Local==0,
dynareParallelSendFiles(['P_slave_',int2str(j),'End.txt'],PRCDir,Parallel(indPC));
delete(['P_slave_',int2str(j),'End.txt']);
end
newInstance = 1;
storeGlobalVars( ['slaveParallel_input',int2str(j),'.mat']);
save( ['slaveParallel_input',int2str(j),'.mat'],'Parallel','-append');
% Prepare global vars for Slave.
end
else
% If the computation is executed remotely all the necessary files
% are created localy, then copied in remote directory and then
% deleted (loacal)!
save( ['slaveParallel_input',int2str(j),'.mat'],'j');
if Parallel(indPC).Local==0,
dynareParallelSendFiles(['P_',fname,'_',int2str(j),'End.txt'],PRCDir,Parallel(indPC));
delete(['P_',fname,'_',int2str(j),'End.txt']);
dynareParallelSendFiles(['slaveParallel_input',int2str(j),'.mat'],PRCDir,Parallel(indPC));
delete(['slaveParallel_input',int2str(j),'.mat']);
end
end
% DA SINTETIZZARE:
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% The following 'switch - case' code is the core of this function!
switch Strategy
case 0
if Parallel(indPC).Local == 1, % 0.1 Run on the local machine (localhost).
if ~ispc || strcmpi('unix',Parallel(indPC).OperatingSystem), % Hybrid computing Windows <-> Unix!
if regexpi([Parallel(indPC).MatlabOctavePath], 'octave') % Hybrid computing Matlab(Master)->Octave(Slaves) and Vice Versa!
command1=[Parallel(indPC).MatlabOctavePath,' -f --eval "default_save_options(''-v7''); addpath(''',Parallel(indPC).DynarePath,'''), dynareroot = dynare_config(); fParallel(',int2str(offset+1),',',int2str(sum(nBlockPerCPU(1:j))),',',int2str(j),',',int2str(indPC),',''',fname,''')" &'];
else
command1=[Parallel(indPC).MatlabOctavePath,' -nosplash -nodesktop -minimize ',compThread,' -r "addpath(''',Parallel(indPC).DynarePath,'''), dynareroot = dynare_config(); fParallel(',int2str(offset+1),',',int2str(sum(nBlockPerCPU(1:j))),',',int2str(j),',',int2str(indPC),',''',fname,''')" &'];
end
else % Hybrid computing Matlab(Master)->Octave(Slaves) and Vice Versa!
if regexpi([Parallel(indPC).MatlabOctavePath], 'octave')
command1=['psexec -d -W ',DyMo, ' -a ',int2str(Parallel(indPC).CPUnbr(j-nCPU0)),' -low ',Parallel(indPC).MatlabOctavePath,' -f --eval "default_save_options(''-v7''); addpath(''',Parallel(indPC).DynarePath,'''), dynareroot = dynare_config(); fParallel(',int2str(offset+1),',',int2str(sum(nBlockPerCPU(1:j))),',',int2str(j),',',int2str(indPC),',''',fname,''')"'];
else
command1=['psexec -d -W ',DyMo, ' -a ',int2str(Parallel(indPC).CPUnbr(j-nCPU0)),' -low ',Parallel(indPC).MatlabOctavePath,' -nosplash -nodesktop -minimize ',compThread,' -r "addpath(''',Parallel(indPC).DynarePath,'''), dynareroot = dynare_config(); fParallel(',int2str(offset+1),',',int2str(sum(nBlockPerCPU(1:j))),',',int2str(j),',',int2str(indPC),',''',fname,''')"'];
end
end
else % 0.2 Parallel(indPC).Local==0: Run using network on remote machine or also on local machine.
if j==nCPU0+1,
dynareParallelSendFiles([fname,'_input.mat'],PRCDir,Parallel(indPC));
dynareParallelSendFiles(NamFileInput,PRCDir,Parallel(indPC));
end
if (~ispc || strcmpi('unix',Parallel(indPC).OperatingSystem)), % Hybrid computing Windows <-> Unix!
if ispc, token='start /B ';
else token = '';
end
if ~isempty(Parallel(indPC).Port),
ssh_token = ['-p ',Parallel(indPC).Port];
else
ssh_token = '';
end
% To manage the diferences in Unix/Windows OS syntax.
remoteFile=['remoteDynare',int2str(j)];
fidRemote=fopen([remoteFile,'.m'],'w+');
if regexpi([Parallel(indPC).MatlabOctavePath], 'octave'),% Hybrid computing Matlab(Master)->Octave(Slaves) and Vice Versa!
remoteString=['default_save_options(''-v7''); addpath(''',Parallel(indPC).DynarePath,'''), dynareroot = dynare_config(); fParallel(',int2str(offset+1),',',int2str(sum(nBlockPerCPU(1:j))),',',int2str(j),',',int2str(indPC),',''',fname,''')'];
command1=[token, 'ssh ',ssh_token,' ',Parallel(indPC).UserName,'@',Parallel(indPC).ComputerName,' "cd ',Parallel(indPC).RemoteDirectory,'/',PRCDir, '; ',Parallel(indPC).MatlabOctavePath,' -f --eval ',remoteFile,' " &'];
else
remoteString=['addpath(''',Parallel(indPC).DynarePath,'''), dynareroot = dynare_config(); fParallel(',int2str(offset+1),',',int2str(sum(nBlockPerCPU(1:j))),',',int2str(j),',',int2str(indPC),',''',fname,''')'];
command1=[token, 'ssh ',ssh_token,' ',Parallel(indPC).UserName,'@',Parallel(indPC).ComputerName,' "cd ',Parallel(indPC).RemoteDirectory,'/',PRCDir, '; ',Parallel(indPC).MatlabOctavePath,' -nosplash -nodesktop -minimize ',compThread,' -r ',remoteFile,';" &'];
end
fprintf(fidRemote,'%s\n',remoteString);
fclose(fidRemote);
dynareParallelSendFiles([remoteFile,'.m'],PRCDir,Parallel(indPC));
delete([remoteFile,'.m']);
else
if ~strcmpi(Parallel(indPC).ComputerName,MasterName), % 0.3 Run on a remote machine!
% Hybrid computing Matlab(Master)-> Octave(Slaves) and Vice Versa!
if regexpi([Parallel(indPC).MatlabOctavePath], 'octave')
command1=['psexec \\',Parallel(indPC).ComputerName,' -d -e -u ',Parallel(indPC).UserName,' -p ',Parallel(indPC).Password,' -W ',Parallel(indPC).RemoteDrive,':\',Parallel(indPC).RemoteDirectory,'\',PRCDir,'\ -a ',int2str(Parallel(indPC).CPUnbr(j-nCPU0)), ...
' -low ',Parallel(indPC).MatlabOctavePath,' -f --eval "default_save_options(''-v7''); addpath(''',Parallel(indPC).DynarePath,'''), dynareroot = dynare_config(); fParallel(',int2str(offset+1),',',int2str(sum(nBlockPerCPU(1:j))),',',int2str(j),',',int2str(indPC),',''',fname,''')"'];
else
command1=['psexec \\',Parallel(indPC).ComputerName,' -d -e -u ',Parallel(indPC).UserName,' -p ',Parallel(indPC).Password,' -W ',Parallel(indPC).RemoteDrive,':\',Parallel(indPC).RemoteDirectory,'\',PRCDir,'\ -a ',int2str(Parallel(indPC).CPUnbr(j-nCPU0)), ...
' -low ',Parallel(indPC).MatlabOctavePath,' -nosplash -nodesktop -minimize ',compThread,' -r "addpath(''',Parallel(indPC).DynarePath,'''), dynareroot = dynare_config(); fParallel(',int2str(offset+1),',',int2str(sum(nBlockPerCPU(1:j))),',',int2str(j),',',int2str(indPC),',''',fname,''')"'];
end
else % 0.4 Run on the local machine via the network
% Hybrid computing Matlab(Master)->Octave(Slaves) and Vice Versa!
if regexpi([Parallel(indPC).MatlabOctavePath], 'octave')
command1=['psexec \\',Parallel(indPC).ComputerName,' -d -e -W ',Parallel(indPC).RemoteDrive,':\',Parallel(indPC).RemoteDirectory,'\',PRCDir,'\ -a ',int2str(Parallel(indPC).CPUnbr(j-nCPU0)), ...
' -low ',Parallel(indPC).MatlabOctavePath,' -f --eval "default_save_options(''-v7''); addpath(''',Parallel(indPC).DynarePath,'''), dynareroot = dynare_config(); fParallel(',int2str(offset+1),',',int2str(sum(nBlockPerCPU(1:j))),',',int2str(j),',',int2str(indPC),',''',fname,''')"'];
else
command1=['psexec \\',Parallel(indPC).ComputerName,' -d -e -W ',Parallel(indPC).RemoteDrive,':\',Parallel(indPC).RemoteDirectory,'\',PRCDir,'\ -a ',int2str(Parallel(indPC).CPUnbr(j-nCPU0)), ...
' -low ',Parallel(indPC).MatlabOctavePath,' -nosplash -nodesktop -minimize ',compThread,' -r "addpath(''',Parallel(indPC).DynarePath,'''), dynareroot = dynare_config(); fParallel(',int2str(offset+1),',',int2str(sum(nBlockPerCPU(1:j))),',',int2str(j),',',int2str(indPC),',''',fname,''')"'];
end
end
end
end
case 1
if Parallel(indPC).Local == 1 && newInstance, % 1.1 Run on the local machine.
if (~ispc || strcmpi('unix',Parallel(indPC).OperatingSystem)), % Hybrid computing Windows <-> Unix!
if regexpi([Parallel(indPC).MatlabOctavePath], 'octave') % Hybrid computing Matlab(Master)-> Octave(Slaves) and Vice Versa!
command1=[Parallel(indPC).MatlabOctavePath,' -f --eval "default_save_options(''-v7''); addpath(''',Parallel(indPC).DynarePath,'''), dynareroot = dynare_config(); slaveParallel(',int2str(j),',',int2str(indPC),')" &'];
else
command1=[Parallel(indPC).MatlabOctavePath,' -nosplash -nodesktop -minimize ',compThread,' -r "addpath(''',Parallel(indPC).DynarePath,'''), dynareroot = dynare_config(); slaveParallel(',int2str(j),',',int2str(indPC),')" &'];
end
else % Hybrid computing Matlab(Master)->Octave(Slaves) and Vice Versa!
if regexpi([Parallel(indPC).MatlabOctavePath], 'octave')
command1=['psexec -d -W ',DyMo, ' -a ',int2str(Parallel(indPC).CPUnbr(j-nCPU0)),' -low ',Parallel(indPC).MatlabOctavePath,' -f --eval "default_save_options(''-v7'');addpath(''',Parallel(indPC).DynarePath,'''), dynareroot = dynare_config(); slaveParallel(',int2str(j),',',int2str(indPC),')"'];
else
command1=['psexec -d -W ',DyMo, ' -a ',int2str(Parallel(indPC).CPUnbr(j-nCPU0)),' -low ',Parallel(indPC).MatlabOctavePath,' -nosplash -nodesktop -minimize ',compThread,' -r "addpath(''',Parallel(indPC).DynarePath,'''), dynareroot = dynare_config(); slaveParallel(',int2str(j),',',int2str(indPC),')"'];
end
end
elseif Parallel(indPC).Local==0, % 1.2 Run using network on remote machine or also on local machine.
if j==nCPU0+1,
dynareParallelSendFiles(NamFileInput,PRCDir,Parallel(indPC));
end
dynareParallelSendFiles(['P_',fname,'_',int2str(j),'End.txt'],PRCDir,Parallel(indPC));
delete(['P_',fname,'_',int2str(j),'End.txt']);
if newInstance,
dynareParallelSendFiles(['slaveJob',int2str(j),'.mat'],PRCDir,Parallel(indPC));
delete(['slaveJob',int2str(j),'.mat']);
dynareParallelSendFiles(['slaveParallel_input',int2str(j),'.mat'],PRCDir,Parallel(indPC))
if (~ispc || strcmpi('unix',Parallel(indPC).OperatingSystem)), % Hybrid computing Windows <-> Unix!
if ispc, token='start /B ';
else token = '';
end
if ~isempty(Parallel(indPC).Port),
ssh_token = ['-p ',Parallel(indPC).Port];
else
ssh_token = '';
end
% To manage the diferences in Unix/Windows OS syntax.
remoteFile=['remoteDynare',int2str(j)];
fidRemote=fopen([remoteFile,'.m'],'w+');
if regexpi([Parallel(indPC).MatlabOctavePath], 'octave') % Hybrid computing Matlab(Master)-> Octave(Slaves) and Vice Versa!
remoteString=['default_save_options(''-v7''); addpath(''',Parallel(indPC).DynarePath,'''), dynareroot = dynare_config(); slaveParallel(',int2str(j),',',int2str(indPC),');'];
command1=[token, 'ssh ',ssh_token,' ',Parallel(indPC).UserName,'@',Parallel(indPC).ComputerName,' "cd ',Parallel(indPC).RemoteDirectory,'/',PRCDir '; ',Parallel(indPC).MatlabOctavePath,' -f --eval ',remoteFile,' " &'];
else
remoteString=['addpath(''',Parallel(indPC).DynarePath,'''), dynareroot = dynare_config(); slaveParallel(',int2str(j),',',int2str(indPC),');'];
command1=[token, 'ssh ',ssh_token,' ',Parallel(indPC).UserName,'@',Parallel(indPC).ComputerName,' "cd ',Parallel(indPC).RemoteDirectory,'/',PRCDir '; ',Parallel(indPC).MatlabOctavePath,' -nosplash -nodesktop -minimize ',compThread,' -r ',remoteFile,';" &'];
end
fprintf(fidRemote,'%s\n',remoteString);
fclose(fidRemote);
dynareParallelSendFiles([remoteFile,'.m'],PRCDir,Parallel(indPC));
delete([remoteFile,'.m']);
else
if ~strcmpi(Parallel(indPC).ComputerName,MasterName), % 1.3 Run on a remote machine.
% Hybrid computing Matlab(Master)->Octave(Slaves) and Vice Versa!
if regexpi([Parallel(indPC).MatlabOctavePath], 'octave')
command1=['psexec \\',Parallel(indPC).ComputerName,' -d -e -u ',Parallel(indPC).UserName,' -p ',Parallel(indPC).Password,' -W ',Parallel(indPC).RemoteDrive,':\',Parallel(indPC).RemoteDirectory,'\',PRCDir,'\ -a ',int2str(Parallel(indPC).CPUnbr(j-nCPU0)), ...
' -low ',Parallel(indPC).MatlabOctavePath,' -f --eval "default_save_options(''-v7'');addpath(''',Parallel(indPC).DynarePath,'''), dynareroot = dynare_config(); slaveParallel(',int2str(j),',',int2str(indPC),')"'];
else
command1=['psexec \\',Parallel(indPC).ComputerName,' -d -e -u ',Parallel(indPC).UserName,' -p ',Parallel(indPC).Password,' -W ',Parallel(indPC).RemoteDrive,':\',Parallel(indPC).RemoteDirectory,'\',PRCDir,'\ -a ',int2str(Parallel(indPC).CPUnbr(j-nCPU0)), ...
' -low ',Parallel(indPC).MatlabOctavePath,' -nosplash -nodesktop -minimize ',compThread,' -r "addpath(''',Parallel(indPC).DynarePath,'''), dynareroot = dynare_config(); slaveParallel(',int2str(j),',',int2str(indPC),')"'];
end
else % 1.4 Run on the local machine via the network.
% Hybrid computing Matlab(Master)->Octave(Slaves) and Vice Versa!
if regexpi([Parallel(indPC).MatlabOctavePath], 'octave')
command1=['psexec \\',Parallel(indPC).ComputerName,' -d -e -W ',Parallel(indPC).RemoteDrive,':\',Parallel(indPC).RemoteDirectory,'\',PRCDir,'\ -a ',int2str(Parallel(indPC).CPUnbr(j-nCPU0)), ...
' -low ',Parallel(indPC).MatlabOctavePath,' -f --eval "default_save_options(''-v7''); addpath(''',Parallel(indPC).DynarePath,'''), dynareroot = dynare_config(); slaveParallel(',int2str(j),',',int2str(indPC),')"'];
else
command1=['psexec \\',Parallel(indPC).ComputerName,' -d -e -W ',Parallel(indPC).RemoteDrive,':\',Parallel(indPC).RemoteDirectory,'\',PRCDir,'\ -a ',int2str(Parallel(indPC).CPUnbr(j-nCPU0)), ...
' -low ',Parallel(indPC).MatlabOctavePath,' -nosplash -nodesktop -minimize ',compThread,' -r "addpath(''',Parallel(indPC).DynarePath,'''), dynareroot = dynare_config(); slaveParallel(',int2str(j),',',int2str(indPC),')"'];
end
end
end
else
% When the user user strategy is equal to 1, you must
% do PRCDirSnapshot here to to avoid problems of
% synchronization.
if isempty(PRCDirSnapshot{indPC}),
PRCDirSnapshot(indPC)=dynareParallelSnapshot(PRCDir,Parallel(indPC));
PRCDirSnapshotInit(indPC) = PRCDirSnapshot(indPC);
else
PRCDirSnapshot(indPC)=dynareParallelGetNewFiles(PRCDir,Parallel(indPC),PRCDirSnapshot(indPC));
end
dynareParallelSendFiles(['slaveJob',int2str(j),'.mat'],PRCDir,Parallel(indPC));
delete(['slaveJob',int2str(j),'.mat']);
end
end
end
fprintf(fid,'%s\n',command1);
end
% In This way we are sure that the file 'ConcurrentCommand1.bat' is
% closed and then it can be deleted!
while (1)
StatusOfCC1_bat = fclose(fid);
if StatusOfCC1_bat==0
break
end
end
% Snapshot of the contents of all the directories involved in parallel
% computing. This is necessary when I want to copy continuously the files produced by
% the slaves ...
% If the compuation is 'Local' it is not necessary to do it ...
if Strategy==0 || newInstance, % See above.
PRCDirSnapshot=dynareParallelSnapshot(PRCDir,Parallel(1:totSlaves));
PRCDirSnapshotInit = PRCDirSnapshot;
% Run the slaves.
if ~ispc, %isunix || (~matlab_ver_less_than('7.4') && ismac),
system('sh ConcurrentCommand1.bat &');
pause(1)
else
if isoctave
% Redirect the standard output to the file 'OctaveStandardOutputMessage.txt'!
% This file is saved in the Model directory.
system('ConcurrentCommand1.bat > OctaveStandardOutputMessage.txt');
else
system('ConcurrentCommand1.bat');
end
end
end
% For matlab enviroment with options_.console_mode = 0:
% create a parallel (local/remote) specialized computational status bars!
global options_
% Create a parallel (local/remote) specialized computational status bars!
if isoctave || options_.console_mode
diary off;
if isoctave
printf('\n');
else
fprintf('\n');
end
else
hfigstatus = figure('name',['Parallel ',fname],...
'DockControls','off', ...
'IntegerHandle','off', ...
'Interruptible','off', ...
'MenuBar', 'none', ...
'NumberTitle','off', ...
'Renderer','Painters', ...
'Resize','off');
vspace = 0.1;
ncol = ceil(totCPU/10);
hspace = 0.9/ncol;
hstatus(1) = axes('position',[0.05/ncol 0.92 0.9/ncol 0.03], ...
'box','on','xtick',[],'ytick',[],'xlim',[0 1],'ylim',[0 1]);
set(hstatus(1),'Units','pixels')
hpixel = get(hstatus(1),'Position');
hfigure = get(hfigstatus,'Position');
hfigure(4)=hpixel(4)*10/3*min(10,totCPU);
set(hfigstatus,'Position',hfigure)
set(hstatus(1),'Units','normalized'),
vspace = max(0.1,1/totCPU);
vstart = 1-vspace+0.2*vspace;
for j=1:totCPU,
jrow = mod(j-1,10)+1;
jcol = ceil(j/10);
hstatus(j) = axes('position',[0.05/ncol+(jcol-1)/ncol vstart-vspace*(jrow-1) 0.9/ncol 0.3*vspace], ...
'box','on','xtick',[],'ytick',[],'xlim',[0 1],'ylim',[0 1]);
hpat(j) = patch([0 0 0 0],[0 1 1 0],'r','EdgeColor','r');
htit(j) = title(['Initialize ...']);
end
cumBlockPerCPU = cumsum(nBlockPerCPU);
end
pcerdone = NaN(1,totCPU);
idCPU = NaN(1,totCPU);
% Wait for the slaves to finish their job, and display some progress
% information meanwhile.
% Caption for console mode computing ...
if options_.console_mode || isoctave
if ~isoctave
if strcmpi([Parallel(indPC).MatlabOctavePath], 'octave')
RjInformation='Hybrid Computing Is Active: Remote jobs are computed by Octave!';
fprintf([RjInformation,'\n\n']);
end
end
fnameTemp=fname;
L=length(fnameTemp);
PoCo=strfind(fnameTemp,'_core');
for i=PoCo:L
if i==PoCo
fnameTemp(i)=' ';
else
fnameTemp(i)='.';
end
end
for i=1:L
if fnameTemp(i)=='_';
fnameTemp(i)=' ';
end
end
fnameTemp(L)='';
Information=['Parallel ' fnameTemp ' Computing ...'];
if isoctave
if (~ispc || strcmpi('unix',Parallel(indPC).OperatingSystem)) && (Strategy==0)
printf('\n');
pause(2);
end
printf([Information,'\n\n']);
else
fprintf([Information,'\n\n']);
end
end
% Testing Zone
% Check the new copy file strategy ...
global NuoviFilecopiati
NuoviFilecopiati=zeros(1,totSlaves);
% End
ForEver=1;
statusString = '';
flag_CloseAllSlaves=0;
while (ForEver)
waitbarString = '';
statusString0 = repmat('\b',1,length(sprintf(statusString, 100 .* pcerdone)));
statusString = '';
pause(1)
try
if islocal ==0,
dynareParallelGetFiles(['comp_status_',fname,'*.mat'],PRCDir,Parallel(1:totSlaves));
end
catch
end
for j=1:totCPU,
try
if ~isempty(['comp_status_',fname,int2str(j),'.mat'])
load(['comp_status_',fname,int2str(j),'.mat']);
% whoCloseAllSlaves = who(['comp_status_',fname,int2str(j),'.mat','CloseAllSlaves']);
if exist('CloseAllSlaves') && flag_CloseAllSlaves==0,
flag_CloseAllSlaves=1;
whoiamCloseAllSlaves=j;
closeSlave(Parallel(1:totSlaves),PRCDir,1);
end
end
pcerdone(j) = prtfrc;
idCPU(j) = njob;
if isoctave || options_.console_mode
if (~ispc || strcmpi('unix',Parallel(indPC).OperatingSystem))
statusString = [statusString, int2str(j), ' %3.f%% done! '];
else
statusString = [statusString, int2str(j), ' %3.f%% done! '];
end
else
status_String{j} = waitbarString;
status_Title{j} = waitbarTitle;
end
catch % ME
% To define!
if isoctave || options_.console_mode
if (~ispc || strcmpi('unix',Parallel(indPC).OperatingSystem))
statusString = [statusString, int2str(j), ' %3.f%% done! '];
else
statusString = [statusString, int2str(j), ' %3.f%% done! '];
end
end
end
end
if isoctave || options_.console_mode
if isoctave
printf([statusString,'\r'], 100 .* pcerdone);
else
if ~isempty(statusString)
fprintf([statusString0,statusString], 100 .* pcerdone);
end
end
else
for j=1:totCPU,
try
set(hpat(j),'XData',[0 0 pcerdone(j) pcerdone(j)]);
set(htit(j),'String',[status_Title{j},' - ',status_String{j}]);
catch
end
end
end
% Check if the slave(s) has generated some new files remotely.
% 1. The files .log and .txt are not copied.
% 2. The comp_status_*.mat files are managed separately.
if isoctave % to avoid synchronism problems
try
PRCDirSnapshot=dynareParallelGetNewFiles(PRCDir,Parallel(1:totSlaves),PRCDirSnapshot);
catch
end
else
PRCDirSnapshot=dynareParallelGetNewFiles(PRCDir,Parallel(1:totSlaves),PRCDirSnapshot);
end
if isempty(dynareParallelDir(['P_',fname,'_*End.txt'],PRCDir,Parallel(1:totSlaves)));
HoTuttiGliOutput=0;
for j=1:totCPU,
% Checking if the remote computation is finished and if we copied all the output here.
if ~isempty(dir([fname,'_output_',int2str(j),'.mat']))
HoTuttiGliOutput=HoTuttiGliOutput+1;
else
indPC=min(find(nCPU>=j));
dynareParallelGetFiles([fname,'_output_',int2str(j),'.mat'],PRCDir,Parallel(indPC));
end
end
if HoTuttiGliOutput==totCPU,
mydelete(['comp_status_',fname,'*.mat']);
if isoctave || options_.console_mode
if isoctave
printf('\n');
printf(['End Parallel Session ....','\n\n']);
else
fprintf('\n');
fprintf(['End Parallel Session ....','\n\n']);
end
diary on;
else
close(hfigstatus),
end
break
else
disp('Waiting for output files from slaves ...')
end
end
end
% Load and format remote output.
iscrash = 0;
PRCDirSnapshot=dynareParallelGetNewFiles(PRCDir,Parallel(1:totSlaves),PRCDirSnapshot);
for j=1:totCPU,
indPC=min(find(nCPU>=j));
load([fname,'_output_',int2str(j),'.mat'],'fOutputVar');
delete([fname,'_output_',int2str(j),'.mat']);
if isfield(fOutputVar,'OutputFileName') && Parallel(indPC).Local==0,
% Check if input files have been updated!
OutputFileName=fOutputVar.OutputFileName;
tmp0='';
for i=1:size(NamFileInput,1),
FileList = regexp(strrep(PRCDirSnapshot{indPC},'\','/'),strrep(strrep([NamFileInput{i,:}],'\','/'),'*','(\w*)'),'match');
for k=1:length(FileList),
if ~isempty(FileList{k}),
if isempty(tmp0),
tmp0=FileList{k}{1};
else
tmp0=char(tmp0,FileList{k}{1});
end
end
end
end
for i=1:size(OutputFileName,1),
tmp1='';
FileList = regexp(cellstr(tmp0),strrep(strrep([OutputFileName{i,:}],'\','/'),'*','(\w*)'),'match');
FileList0 = regexp(cellstr(tmp0),strrep([OutputFileName{i,2}],'*','(\w*)'),'match');
for k=1:length(FileList),
if ~isempty(FileList{k}),
if isempty(tmp1),
tmp1=FileList0{k}{1};
else
tmp1=char(tmp1,FileList0{k}{1});
end
end
end
for k=1:size(tmp1,1),
dynareParallelGetFiles([OutputFileName(i,1) {tmp1(k,:)}],PRCDir,Parallel(indPC));
end
end
% check if some output file is missing!
for i=1:size(OutputFileName,1),
tmp1=dynareParallelDir([OutputFileName{i,:}],PRCDir,Parallel(indPC));
tmp1 = regexp(cellstr(tmp1),strrep([OutputFileName{i,2}],'*','(\w*)'),'match');
tmp1 = char(tmp1{:});
tmp2=ls([OutputFileName{i,:}]);
for ij=1:size(tmp1,1),
icheck = regexp(cellstr(tmp2),tmp1(ij,:),'once');
isOutputFileMissing=1;
for ik=1:size(tmp2,1),
if ~isempty(icheck{ik}),
isOutputFileMissing=0;
end
end
if isOutputFileMissing,
dynareParallelGetFiles([OutputFileName(i,1) {tmp1(ij,:)}],PRCDir,Parallel(indPC));
end
end
end
end
if isfield(fOutputVar,'error'),
disp(['Job number ',int2str(j),' crashed with error:']);
iscrash=1;
disp([fOutputVar.error.message]);
for jstack=1:length(fOutputVar.error.stack)
fOutputVar.error.stack(jstack),
end
elseif flag_CloseAllSlaves==0,
fOutVar(j)=fOutputVar;
elseif j==whoiamCloseAllSlaves,
fOutVar=fOutputVar;
end
end
if flag_CloseAllSlaves==1,
closeSlave(Parallel(1:totSlaves),PRCDir,-1);
end
if iscrash,
error('Remote jobs crashed');
end
pause(1), % Wait for all remote diary off completed
% Cleanup.
dynareParallelGetFiles('*.log',PRCDir,Parallel(1:totSlaves));
switch Strategy
case 0
for indPC=1:min(find(nCPU>=totCPU)),
if Parallel(indPC).Local == 0
dynareParallelRmDir(PRCDir,Parallel(indPC));
end
if isempty(dir('dynareParallelLogFiles'))
[A B C]=rmdir('dynareParallelLogFiles');
mkdir('dynareParallelLogFiles');
end
try
copyfile('*.log','dynareParallelLogFiles');
mydelete([fname,'*.log']);
catch
end
mydelete(['*_core*_input*.mat']);
end
delete ConcurrentCommand1.bat
case 1
delete(['temp_input.mat'])
if newInstance,
if isempty(dir('dynareParallelLogFiles'))
[A B C]=rmdir('dynareParallelLogFiles');
mkdir('dynareParallelLogFiles');
end
end
copyfile('*.log','dynareParallelLogFiles');
if newInstance,
delete ConcurrentCommand1.bat
end
dynareParallelDelete(['comp_status_',fname,'*.mat'],PRCDir,Parallel);
for indPC=1:min(find(nCPU>=totCPU)),
if Parallel(indPC).Local == 0,
dynareParallelDeleteNewFiles(PRCDir,Parallel(indPC),PRCDirSnapshotInit(indPC),'.log');
for ifil=1:size(NamFileInput,1),
dynareParallelDelete([NamFileInput{ifil,:}],PRCDir,Parallel(indPC));
end
end
end
end
|