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/usr/share/EMBOSS/test/data/dna.m-clustal is in emboss-test 6.6.0-1.

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CLUSTAL W(1.4) multiple sequence alignment


ALNM1           ACGTACGTAC GTACGTACGT ACGTACGTAC GTACGTACGT ACGTACGTAC
ALNM2           ACGTACGTAC GTACGTACGT ----ACGTAC GTACGTACGT ACGTACGTAC
ALNM3           ACGTACGTAC GTACGTACGT ACGTACGTAC GTACGTACGT CGTACGTACG
                                                                      

ALNM1           GTACGTACGT ACGTACGTAC GTACGTACGT ACGTACGTAC GTACGTACGT
ALNM2           GTACGTACGT ACGTACGTAC GTACGTACGT ACGTACGTAC GTACGTACGT
ALNM3           TACGTACGTA CGTACGTACG TACGTACGTA ACGTACGTAC GTACGTACGT
                                                                      

ALNM1           ACGTACGTAC GTACGTACGT
ALNM2           ACGTACGTTG CAACGTACGT
ALNM3           ACGTACGTAC GTACGTACGT